gene15953-v1.0-hybrid (Fragaria vesca)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 gene15953-v1.0-hybrid T008402_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK19363.1
M01100_2.00 		Cannabis sativa
NMGCCGHMNN
NNKDCGGCKN		 PBM
Lambert et al.(2019)
pTH10138 		0.693 0.745
PK19363.1
M01643_2.00 		Cannabis sativa
CGCCGYCD
HGRCGGCG		 PBM
Weirauch et al.(2014)
pTH9609 		0.693 0.745
ERF9
M06670_2.00 		Arabidopsis thaliana
YCDCCGCCGYCDHHDYHDYHN
NDRHDRHDDHGRCGGCGGHGR		 Dap-seq
OMalley et al.(2016)
ERF9_col_a 		0.687 0.706
ERF9
M06671_2.00 		Arabidopsis thaliana
NNHDSCGCCGYCRHWDN
NHWDYGRCGGCGSHDNN		 Dap-seq
OMalley et al.(2016)
ERF9_colamp_a 		0.687 0.706
ERF4
M01616_2.00 		Arabidopsis thaliana
VCGCCGCC
GGCGGCGB		 PBM
Weirauch et al.(2014)
pTH8156 		0.681 0.745
ERF4
M06616_2.00 		Arabidopsis thaliana
YCDCCGCCGCCRHHD
HDDYGGCGGCGGHGR		 Dap-seq
OMalley et al.(2016)
ERF4_col_a 		0.681 0.745
ERF4
M06617_2.00 		Arabidopsis thaliana
NHNNHNSCGCCGYCRHHDNN
NNHDDYGRCGGCGSNDNNDN		 Dap-seq
OMalley et al.(2016)
ERF4_colamp_a 		0.681 0.745
ERF4_TOBAC
M09728_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF3_02 		0.681 0.706
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna15953.1-v1.0-hybrid AP2 152 203

Links

Other AP2 family TFs
Other Fragaria vesca TFs

221 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PRUPE_ppa020928mg Prunus persica PRUPE_ppa020928mg I 0.875
Pm013734 Prunus mume Pm013734 I 0.869
MDP0000264187 Malus domestica MDP0000264187 I 0.869
MTR_4g009260 Medicago truncatula MTR_4g009260 I 0.866
Ciclev10027171m.g Citrus clementina Ciclev10027171m.g I 0.866
orange1.1g047950m.g Citrus sinensis orange1.1g047950m.g I 0.866
POPTR_0017s08090 Populus trichocarpa POPTR_0017s08090 I 0.857
TCM_027348 Theobroma cacao TCM_027348 I 0.857
GLYMA08G23074 Glycine max GLYMA08G23074 I 0.853
AMTR_s00026p00180130 Amborella trichopoda AMTR_s00026p00180130 I 0.852
VIT_09s0002g08830 Vitis vinifera VIT_09s0002g08830 I 0.850
mgf023662m Mimulus guttatus mgf023662m I 0.850
evm.TU.supercontig_10.125 Carica papaya evm.TU.supercontig_10.125 I 0.850
Gorai.006G107500 Gossypium raimondii Gorai.006G107500 I 0.850
SapurV1A.1000s0130 Salix purpurea SapurV1A.1000s0130 I 0.850
POPTR_0001s32050 Populus trichocarpa POPTR_0001s32050 I 0.849
Cla015583 Citrullus lanatus Cla015583 I 0.849
27446.m000475 Ricinus communis 27446.m000475 I 0.849
cassava38416.m1 Manihot esculenta cassava38416.m1 I 0.849
Cucsa.105790 Cucumis sativus Cucsa.105790 I 0.849
SapurV1A.0058s0710 Salix purpurea SapurV1A.0058s0710 I 0.849
GLYMA07G03041 Glycine max GLYMA07G03041 I 0.847
Ca_20041 Cicer arietinum Ca_20041 I 0.841
Eucgr.F03941 Eucalyptus grandis Eucgr.F03941 N 0.832
Solyc03g117230.1 Solanum lycopersicum Solyc03g117230.1 N 0.830
Gorai.009G125700 Gossypium raimondii Gorai.009G125700 N 0.830
ERF084 Arabidopsis thaliana AT1G80580 N 0.828
fgenesh1_pm.C_scaffold_2001935 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2001935 N 0.828
Bostr.20129s0456 Boechera stricta Bostr.20129s0456 N 0.828
Cagra.1725s0082 Capsella grandiflora Cagra.1725s0082 N 0.828
Carubv10022119m.g Capsella rubella Carubv10022119m.g N 0.828
Thhalv10000556m.g Eutrema salsugineum Thhalv10000556m.g N 0.824
Thhalv10019474m.g Eutrema salsugineum Thhalv10019474m.g N 0.824
Lus10014345.g Linum usitatissimum Lus10014345.g N 0.823
Bra008460 Brassica rapa Bra008460 N 0.817
Lus10026053.g Linum usitatissimum Lus10026053.g N 0.816
gw1.204.54.1 Physcomitrella patens gw1.204.54.1 N 0.803
SELMODRAFT_412693 Selaginella moellendorffii SELMODRAFT_412693 N 0.802
SELMODRAFT_417258 Selaginella moellendorffii SELMODRAFT_417258 N 0.802
SELMODRAFT_428344 Selaginella moellendorffii SELMODRAFT_428344 N 0.799
SELMODRAFT_428599 Selaginella moellendorffii SELMODRAFT_428599 N 0.799
PGSC0003DMG400010135 Solanum tuberosum PGSC0003DMG400010135 N 0.794
fgenesh1_pg.scaffold_23000002 Physcomitrella patens fgenesh1_pg.scaffold_23000002 I 0.791
Bo2g095830 Brassica oleracea Bo2g095830 N 0.776
e_gw1.15.234.1 Physcomitrella patens e_gw1.15.234.1 N 0.774
e_gw1.14.213.1 Physcomitrella patens e_gw1.14.213.1 N 0.771
e_gw1.145.79.1 Physcomitrella patens e_gw1.145.79.1 N 0.768
e_gw1.276.69.1 Physcomitrella patens e_gw1.276.69.1 N 0.757
gw1.340.39.1 Physcomitrella patens gw1.340.39.1 N 0.743
POPTR_0013s15440 Populus trichocarpa POPTR_0013s15440 I 0.727
GSMUA_Achr1G25890_001 Musa acuminata GSMUA_Achr1G25890_001 I 0.718
BGIOSGA019608 Oryza indica BGIOSGA019608 N 0.716
OMERI05G10040 Oryza meridionalis OMERI05G10040 N 0.716
ONIVA05G11840 Oryza nivara ONIVA05G11840 N 0.716
ORUFI05G12300 Oryza rufipogon ORUFI05G12300 N 0.716
OS05G0316800 Oryza sativa OS05G0316800 N 0.716
BRADI3G18070 Brachypodium distachyon BRADI3G18070 I 0.713
Solyc01g095500.2 Solanum lycopersicum Solyc01g095500.2 I 0.710
PGSC0003DMG400000091 Solanum tuberosum PGSC0003DMG400000091 I 0.704
PGSC0003DMG400012828 Solanum tuberosum PGSC0003DMG400012828 I 0.704
SapurV1A.2062s0030 Salix purpurea SapurV1A.2062s0030 I 0.702
Pavir.Fa01730 Panicum virgatum Pavir.Fa01730 I 0.699
Ca_20544 Cicer arietinum Ca_20544 I 0.697
Pavir.Fb00952 Panicum virgatum Pavir.Fb00952 I 0.697
Pavir.Fb01486 Panicum virgatum Pavir.Fb01486 I 0.697
GLYMA08G43300 Glycine max GLYMA08G43300 I 0.696
GLYMA18G10290 Glycine max GLYMA18G10290 I 0.695
Cucsa.126880 Cucumis sativus Cucsa.126880 I 0.695
MTR_2g014340 Medicago truncatula MTR_2g014340 I 0.694
Bra015266 Brassica rapa Bra015266 I 0.693
PK19363.1 Cannabis sativa PK19363.1 D 0.693
VIT_10s0003g00140 Vitis vinifera VIT_10s0003g00140 I 0.692
Cla002268 Citrullus lanatus Cla002268 I 0.692
Cla020000 Citrullus lanatus Cla020000 I 0.692
Cucsa.195660 Cucumis sativus Cucsa.195660 I 0.692
GRMZM2G310368 Zea mays GRMZM2G310368 I 0.691
GSMUA_Achr7G03640_001 Musa acuminata GSMUA_Achr7G03640_001 I 0.691
GSMUA_AchrUn_randomG16100_001 Musa acuminata GSMUA_AchrUn_randomG16100_001 I 0.691
Q84LQ6_SOLLC Solanum lycopersicum Q84LQ6_SOLLC I 0.690
Q84XB1_SOLLC Solanum lycopersicum Q84XB1_SOLLC I 0.690
Solyc10g009110.1 Solanum lycopersicum Solyc10g009110.1 I 0.690
TCM_029820 Theobroma cacao TCM_029820 I 0.690
30190.m011321 Ricinus communis 30190.m011321 I 0.690
cassava1589.valid.m1 Manihot esculenta cassava1589.valid.m1 I 0.690
cassava20937.m1 Manihot esculenta cassava20937.m1 I 0.690
Aquca_036_00070 Aquilegia coerulea Aquca_036_00070 I 0.690
Ciclev10016463m.g Citrus clementina Ciclev10016463m.g I 0.690
evm.TU.supercontig_27.16 Carica papaya evm.TU.supercontig_27.16 I 0.690
gene29738-v1.0-hybrid Fragaria vesca gene29738-v1.0-hybrid I 0.690
Gorai.006G088000 Gossypium raimondii Gorai.006G088000 I 0.690
Gorai.010G155900 Gossypium raimondii Gorai.010G155900 I 0.690
Lus10015415.g Linum usitatissimum Lus10015415.g I 0.690
orange1.1g026240m.g Citrus sinensis orange1.1g026240m.g I 0.690
PK02602.1 Cannabis sativa PK02602.1 I 0.690
GSMUA_Achr4G33270_001 Musa acuminata GSMUA_Achr4G33270_001 I 0.689
GSMUA_Achr6G00250_001 Musa acuminata GSMUA_Achr6G00250_001 I 0.689
MLOC_24530 Hordeum vulgare MLOC_24530 I 0.689
OB01G42720 Oryza brachyantha OB01G42720 I 0.689
BGIOSGA004611 Oryza indica BGIOSGA004611 I 0.688
BGIOSGA017796 Oryza indica BGIOSGA017796 I 0.688
BRADI2G52370 Brachypodium distachyon BRADI2G52370 I 0.688
GSMUA_Achr4G23620_001 Musa acuminata GSMUA_Achr4G23620_001 I 0.688
LPERR01G29260 Leersia perrieri LPERR01G29260 I 0.688
LPERR05G17480 Leersia perrieri LPERR05G17480 I 0.688
OBART01G33870 Oryza barthii OBART01G33870 I 0.688
OBART05G21580 Oryza barthii OBART05G21580 I 0.688
OGLUM01G38110 Oryza glumaepatula OGLUM01G38110 I 0.688
OGLUM05G22790 Oryza glumaepatula OGLUM05G22790 I 0.688
OLONG_021733 Oryza longistaminata OLONG_021733 I 0.688
OMERI01G30710 Oryza meridionalis OMERI01G30710 I 0.688
OMERI05G19490 Oryza meridionalis OMERI05G19490 I 0.688
ONIVA01G38670 Oryza nivara ONIVA01G38670 I 0.688
ONIVA05G22270 Oryza nivara ONIVA05G22270 I 0.688
OPUNC01G32930 Oryza punctata OPUNC01G32930 I 0.688
OPUNC05G19230 Oryza punctata OPUNC05G19230 I 0.688
ORGLA01G0278100 Oryza glaberrima ORGLA01G0278100 I 0.688
ORGLA05G0187600 Oryza glaberrima ORGLA05G0187600 I 0.688
ORUFI01G37120 Oryza rufipogon ORUFI01G37120 I 0.688
ORUFI05G22850 Oryza rufipogon ORUFI05G22850 I 0.688
OS01G0797600 Oryza sativa OS01G0797600 I 0.688
OS05G0497300 Oryza sativa OS05G0497300 I 0.688
Si002729m.g Setaria italica Si002729m.g I 0.688
TRAES3BF075600050CFD_g Triticum aestivum TRAES3BF075600050CFD_g I 0.688
29983.m003147 Ricinus communis 29983.m003147 I 0.688
Carubv10014552m.g Capsella rubella Carubv10014552m.g I 0.688
Gorai.002G067600 Gossypium raimondii Gorai.002G067600 I 0.688
Pavir.Ea03147 Panicum virgatum Pavir.Ea03147 I 0.688
Pavir.Eb03458 Panicum virgatum Pavir.Eb03458 I 0.688
Thhalv10021456m.g Eutrema salsugineum Thhalv10021456m.g I 0.688
ERF9 Arabidopsis thaliana AT5G44210 D 0.687
ERF9 Arabidopsis lyrata fgenesh2_kg.8__388__AT5G44210.1 I 0.687
GSMUA_Achr7G00350_001 Musa acuminata GSMUA_Achr7G00350_001 I 0.687
MTR_4g078710 Medicago truncatula MTR_4g078710 I 0.687
PGSC0003DMG401013892 Solanum tuberosum PGSC0003DMG401013892 I 0.687
PGSC0003DMG402013892 Solanum tuberosum PGSC0003DMG402013892 I 0.687
POPTR_0001s40770 Populus trichocarpa POPTR_0001s40770 I 0.687
POPTR_0004s04720 Populus trichocarpa POPTR_0004s04720 I 0.687
POPTR_0011s05580 Populus trichocarpa POPTR_0011s05580 I 0.687
POPTR_0011s11620 Populus trichocarpa POPTR_0011s11620 I 0.687
Si023088m.g Setaria italica Si023088m.g I 0.687
Solyc12g005960.1 Solanum lycopersicum Solyc12g005960.1 I 0.687
Ca_11261 Cicer arietinum Ca_11261 I 0.687
Cucsa.046390 Cucumis sativus Cucsa.046390 I 0.687
Bostr.3148s0037 Boechera stricta Bostr.3148s0037 I 0.687
Ciclev10016276m.g Citrus clementina Ciclev10016276m.g I 0.687
Eucgr.F01164 Eucalyptus grandis Eucgr.F01164 I 0.687
Pavir.J14354 Panicum virgatum Pavir.J14354 I 0.687
SapurV1A.0012s0580 Salix purpurea SapurV1A.0012s0580 I 0.687
SapurV1A.1244s0010 Salix purpurea SapurV1A.1244s0010 I 0.687
SapurV1A.1325s0040 Salix purpurea SapurV1A.1325s0040 I 0.687
GLYMA12G26836 Glycine max GLYMA12G26836 I 0.686
GLYMA12G35550 Glycine max GLYMA12G35550 I 0.686
GLYMA13G34920 Glycine max GLYMA13G34920 I 0.686
GSMUA_Achr8G03550_001 Musa acuminata GSMUA_Achr8G03550_001 I 0.686
GSMUA_Achr8G33590_001 Musa acuminata GSMUA_Achr8G33590_001 I 0.686
PGSC0003DMG400022823 Solanum tuberosum PGSC0003DMG400022823 I 0.686
TCM_031608 Theobroma cacao TCM_031608 I 0.686
VIT_19s0014g02240 Vitis vinifera VIT_19s0014g02240 I 0.686
27904.m000217 Ricinus communis 27904.m000217 I 0.686
Cagra.0897s0005 Capsella grandiflora Cagra.0897s0005 I 0.686
Carubv10011371m.g Capsella rubella Carubv10011371m.g I 0.686
Ciclev10009484m.g Citrus clementina Ciclev10009484m.g I 0.686
evm.TU.supercontig_131.83 Carica papaya evm.TU.supercontig_131.83 I 0.686
Gorai.009G375700 Gossypium raimondii Gorai.009G375700 I 0.686
Gorai.011G029800 Gossypium raimondii Gorai.011G029800 I 0.686
orange1.1g028454m.g Citrus sinensis orange1.1g028454m.g I 0.686
GLYMA15G08370 Glycine max GLYMA15G08370 I 0.685
Sb03g037080 Sorghum bicolor Sb03g037080 I 0.685
cassava2923.m1 Manihot esculenta cassava2923.m1 N 0.685
cassava46560.m1 Manihot esculenta cassava46560.m1 I 0.685
Pavir.Ca01358 Panicum virgatum Pavir.Ca01358 I 0.685
GLYMA13G30990 Glycine max GLYMA13G30990 I 0.684
PRUPE_ppa010982mg Prunus persica PRUPE_ppa010982mg I 0.684
Ca_22534 Cicer arietinum Ca_22534 I 0.684
Pm011391 Prunus mume Pm011391 I 0.684
mgf019214m Mimulus guttatus mgf019214m I 0.684
Cagra.0381s0006 Capsella grandiflora Cagra.0381s0006 I 0.684
Carubv10027246m.g Capsella rubella Carubv10027246m.g I 0.684
evm.TU.supercontig_83.80 Carica papaya evm.TU.supercontig_83.80 I 0.684
Gorai.005G200200 Gossypium raimondii Gorai.005G200200 I 0.684
chr6.CM0114.120.nc Lotus japonicus chr6.CM0114.120.nc I 0.684
Bo2g122260 Brassica oleracea Bo2g122260 I 0.683
Bra006325 Brassica rapa Bra006325 I 0.683
Bra036016 Brassica rapa Bra036016 I 0.683
cassava37846.valid.m1 Manihot esculenta cassava37846.valid.m1 I 0.683
Thhalv10003431m.g Eutrema salsugineum Thhalv10003431m.g I 0.683
GLYMA06G35710 Glycine max GLYMA06G35710 I 0.682
GSMUA_Achr8G15830_001 Musa acuminata GSMUA_Achr8G15830_001 I 0.682
Si008428m.g Setaria italica Si008428m.g I 0.682
VIT_12s0028g03270 Vitis vinifera VIT_12s0028g03270 I 0.682
Ca_00327 Cicer arietinum Ca_00327 I 0.682
ERF4 Arabidopsis thaliana AT3G15210 D 0.681
Bo3g066710 Brassica oleracea Bo3g066710 I 0.681
Bo3g074840 Brassica oleracea Bo3g074840 I 0.681
Bra001588 Brassica rapa Bra001588 I 0.681
Bra001784 Brassica rapa Bra001784 I 0.681
GSMUA_Achr9G11480_001 Musa acuminata GSMUA_Achr9G11480_001 I 0.681
MTR_2g078680 Medicago truncatula MTR_2g078680 I 0.681
PGSC0003DMG400013744 Solanum tuberosum PGSC0003DMG400013744 I 0.681
PGSC0003DMG400026821 Solanum tuberosum PGSC0003DMG400026821 I 0.681
ATERF-4 Arabidopsis lyrata scaffold_301765.1 I 0.681
Solyc03g006320.1 Solanum lycopersicum Solyc03g006320.1 I 0.681
Solyc07g053740.1 Solanum lycopersicum Solyc07g053740.1 I 0.681
TCM_008162 Theobroma cacao TCM_008162 I 0.681
ERF4_TOBAC Nicotiana tabacum ERF4_TOBAC D 0.681
Bostr.19424s0625 Boechera stricta Bostr.19424s0625 I 0.681
Bostr.28625s0184 Boechera stricta Bostr.28625s0184 I 0.681
Cagra.0316s0033 Capsella grandiflora Cagra.0316s0033 I 0.681
Carubv10014475m.g Capsella rubella Carubv10014475m.g I 0.681
Gorai.010G256600 Gossypium raimondii Gorai.010G256600 I 0.681
POPTR_0017s04540 Populus trichocarpa POPTR_0017s04540 I 0.680
MDP0000324718 Malus domestica MDP0000324718 I 0.680
Bo5g127380 Brassica oleracea Bo5g127380 I 0.679
Bra027270 Brassica rapa Bra027270 I 0.679
BRADI2G21060 Brachypodium distachyon BRADI2G21060 I 0.679
MLOC_73358 Hordeum vulgare MLOC_73358 I 0.679
Cla009795 Citrullus lanatus Cla009795 I 0.679
GRMZM2G132185 Zea mays GRMZM2G132185 I 0.678
Lus10039857.g Linum usitatissimum Lus10039857.g I 0.677
SapurV1A.0032s0470 Salix purpurea SapurV1A.0032s0470 I 0.677
SapurV1A.3143s0020 Salix purpurea SapurV1A.3143s0020 I 0.677