gene23316-v1.0-hybrid (Fragaria vesca)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 gene23316-v1.0-hybrid T008426_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TOE2
M00851_2.00 		Arabidopsis thaliana
NNNNTACGAGGWN
NWCCTCGTANNNN		 PBM
Franco-Zorrilla et al.(2014)
TOE2 		0.826 0.938
SMZ
M08402_2.00 		Arabidopsis thaliana
YCTCGTAC
GTACGAGR		 ChIP-chip
Mathelier et al.(2014)
MA0553.1 		0.817 0.938
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna23316.1-v1.0-hybrid AP2 152 201

Links

Other AP2 family TFs
Other Fragaria vesca TFs

43 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PRUPE_ppa018704mg Prunus persica PRUPE_ppa018704mg I 0.863
Pm018608 Prunus mume Pm018608 I 0.863
MDP0000281079 Malus domestica MDP0000281079 I 0.853
MDP0000285955 Malus domestica MDP0000285955 I 0.853
GRMZM2G416701 Zea mays GRMZM2G416701 I 0.829
PGSC0003DMG400011046 Solanum tuberosum PGSC0003DMG400011046 I 0.829
PGSC0003DMG400012038 Solanum tuberosum PGSC0003DMG400012038 I 0.829
Sb10g001490 Sorghum bicolor Sb10g001490 I 0.829
Cla020387 Citrullus lanatus Cla020387 I 0.829
Cucsa.165940 Cucumis sativus Cucsa.165940 I 0.829
Gorai.003G139800 Gossypium raimondii Gorai.003G139800 I 0.829
Gorai.011G241700 Gossypium raimondii Gorai.011G241700 I 0.829
Lus10040365.g Linum usitatissimum Lus10040365.g I 0.829
PK16652.1 Cannabis sativa PK16652.1 I 0.829
TOE2 Arabidopsis thaliana AT5G60120 D 0.826
Bo9g141100 Brassica oleracea Bo9g141100 I 0.826
Bra002510 Brassica rapa Bra002510 I 0.826
Bra020262 Brassica rapa Bra020262 I 0.826
Bostr.26833s0222 Boechera stricta Bostr.26833s0222 I 0.826
Cagra.1317s0005 Capsella grandiflora Cagra.1317s0005 I 0.826
Carubv10026292m.g Capsella rubella Carubv10026292m.g I 0.826
Thhalv10013367m.g Eutrema salsugineum Thhalv10013367m.g I 0.826
SMZ Arabidopsis thaliana AT3G54990 D 0.817
Bo8g087280 Brassica oleracea Bo8g087280 I 0.817
Bra007123 Brassica rapa Bra007123 I 0.817
SMZ Arabidopsis lyrata fgenesh2_kg.5__1910__AT3G54990.1 I 0.817
Bostr.0697s0115 Boechera stricta Bostr.0697s0115 I 0.817
Cagra.1742s0021 Capsella grandiflora Cagra.1742s0021 I 0.817
Carubv10018526m.g Capsella rubella Carubv10018526m.g I 0.817
Eucgr.G02793 Eucalyptus grandis Eucgr.G02793 I 0.817
Thhalv10010513m.g Eutrema salsugineum Thhalv10010513m.g I 0.817
GLYMA02G09600 Glycine max GLYMA02G09600 I 0.813
GLYMA10G22390 Glycine max GLYMA10G22390 I 0.813
MTR_1g049140 Medicago truncatula MTR_1g049140 I 0.811
Bo6g068410 Brassica oleracea Bo6g068410 I 0.802
Cagra.0716s0040 Capsella grandiflora Cagra.0716s0040 I 0.802
Carubv10023614m.g Capsella rubella Carubv10023614m.g I 0.802
SNZ Arabidopsis thaliana AT2G39250 I 0.794
SNZ Arabidopsis lyrata fgenesh1_pm.C_scaffold_4001673 I 0.794
Bostr.23794s0149 Boechera stricta Bostr.23794s0149 I 0.794
Ca_26761 Cicer arietinum Ca_26761 I 0.779
Al_scaffold_0003_2798 Arabidopsis lyrata Al_scaffold_0003_2798 I 0.695
MDP0000130802 Malus domestica MDP0000130802 I 0.680