Gorai.006G107500 (Gossypium raimondii)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Gorai.006G107500 T008561_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF9
M06670_2.00 		Arabidopsis thaliana
YCDCCGCCGYCDHHDYHDYHN
NDRHDRHDDHGRCGGCGGHGR		 Dap-seq
OMalley et al.(2016)
ERF9_col_a 		0.692 0.745
ERF9
M06671_2.00 		Arabidopsis thaliana
NNHDSCGCCGYCRHWDN
NHWDYGRCGGCGSHDNN		 Dap-seq
OMalley et al.(2016)
ERF9_colamp_a 		0.692 0.745
ERF4
M01616_2.00 		Arabidopsis thaliana
VCGCCGCC
GGCGGCGB		 PBM
Weirauch et al.(2014)
pTH8156 		0.683 0.745
ERF4
M06616_2.00 		Arabidopsis thaliana
YCDCCGCCGCCRHHD
HDDYGGCGGCGGHGR		 Dap-seq
OMalley et al.(2016)
ERF4_col_a 		0.683 0.745
ERF4
M06617_2.00 		Arabidopsis thaliana
NHNNHNSCGCCGYCRHHDNN
NNHDDYGRCGGCGSNDNNDN		 Dap-seq
OMalley et al.(2016)
ERF4_colamp_a 		0.683 0.745
ERF4_TOBAC
M09728_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF3_02 		0.683 0.725
PK19363.1
M01100_2.00 		Cannabis sativa
NMGCCGHMNN
NNKDCGGCKN		 PBM
Lambert et al.(2019)
pTH10138 		0.677 0.706
PK19363.1
M01643_2.00 		Cannabis sativa
CGCCGYCD
HGRCGGCG		 PBM
Weirauch et al.(2014)
pTH9609 		0.677 0.706
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.006G107500.1 AP2 134 185

Links

Other AP2 family TFs
Other Gossypium raimondii TFs

167 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TCM_027348 Theobroma cacao TCM_027348 I 0.865
VIT_09s0002g08830 Vitis vinifera VIT_09s0002g08830 I 0.862
mgf023662m Mimulus guttatus mgf023662m I 0.862
evm.TU.supercontig_10.125 Carica papaya evm.TU.supercontig_10.125 I 0.862
Cla015583 Citrullus lanatus Cla015583 I 0.861
Cucsa.105790 Cucumis sativus Cucsa.105790 I 0.861
GLYMA08G23074 Glycine max GLYMA08G23074 I 0.859
AMTR_s00026p00180130 Amborella trichopoda AMTR_s00026p00180130 I 0.854
GLYMA07G03041 Glycine max GLYMA07G03041 I 0.853
MTR_4g009260 Medicago truncatula MTR_4g009260 I 0.853
Ca_20041 Cicer arietinum Ca_20041 I 0.853
Ciclev10027171m.g Citrus clementina Ciclev10027171m.g I 0.853
orange1.1g047950m.g Citrus sinensis orange1.1g047950m.g I 0.853
POPTR_0017s08090 Populus trichocarpa POPTR_0017s08090 I 0.852
PRUPE_ppa020928mg Prunus persica PRUPE_ppa020928mg I 0.852
SapurV1A.1000s0130 Salix purpurea SapurV1A.1000s0130 I 0.852
Pm013734 Prunus mume Pm013734 I 0.850
gene15953-v1.0-hybrid Fragaria vesca gene15953-v1.0-hybrid I 0.850
MDP0000264187 Malus domestica MDP0000264187 I 0.850
POPTR_0001s32050 Populus trichocarpa POPTR_0001s32050 I 0.849
27446.m000475 Ricinus communis 27446.m000475 I 0.849
cassava38416.m1 Manihot esculenta cassava38416.m1 I 0.849
SapurV1A.0058s0710 Salix purpurea SapurV1A.0058s0710 I 0.849
Solyc03g117230.1 Solanum lycopersicum Solyc03g117230.1 N 0.842
Gorai.009G125700 Gossypium raimondii Gorai.009G125700 N 0.842
Eucgr.F03941 Eucalyptus grandis Eucgr.F03941 N 0.838
ERF084 Arabidopsis thaliana AT1G80580 N 0.829
fgenesh1_pm.C_scaffold_2001935 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2001935 N 0.829
Bostr.20129s0456 Boechera stricta Bostr.20129s0456 N 0.829
Cagra.1725s0082 Capsella grandiflora Cagra.1725s0082 N 0.829
Carubv10022119m.g Capsella rubella Carubv10022119m.g N 0.829
Thhalv10000556m.g Eutrema salsugineum Thhalv10000556m.g N 0.825
Thhalv10019474m.g Eutrema salsugineum Thhalv10019474m.g N 0.825
Bra008460 Brassica rapa Bra008460 N 0.818
SELMODRAFT_412693 Selaginella moellendorffii SELMODRAFT_412693 N 0.808
SELMODRAFT_417258 Selaginella moellendorffii SELMODRAFT_417258 N 0.808
PGSC0003DMG400010135 Solanum tuberosum PGSC0003DMG400010135 N 0.806
gw1.204.54.1 Physcomitrella patens gw1.204.54.1 N 0.802
SELMODRAFT_428344 Selaginella moellendorffii SELMODRAFT_428344 N 0.799
SELMODRAFT_428599 Selaginella moellendorffii SELMODRAFT_428599 N 0.799
fgenesh1_pg.scaffold_23000002 Physcomitrella patens fgenesh1_pg.scaffold_23000002 I 0.797
Lus10014345.g Linum usitatissimum Lus10014345.g N 0.797
Lus10026053.g Linum usitatissimum Lus10026053.g N 0.789
e_gw1.15.234.1 Physcomitrella patens e_gw1.15.234.1 N 0.779
Bo2g095830 Brassica oleracea Bo2g095830 N 0.777
e_gw1.145.79.1 Physcomitrella patens e_gw1.145.79.1 N 0.773
e_gw1.14.213.1 Physcomitrella patens e_gw1.14.213.1 N 0.766
e_gw1.276.69.1 Physcomitrella patens e_gw1.276.69.1 N 0.762
gw1.340.39.1 Physcomitrella patens gw1.340.39.1 N 0.749
POPTR_0013s15440 Populus trichocarpa POPTR_0013s15440 I 0.729
GSMUA_Achr1G25890_001 Musa acuminata GSMUA_Achr1G25890_001 I 0.725
BGIOSGA019608 Oryza indica BGIOSGA019608 N 0.712
OMERI05G10040 Oryza meridionalis OMERI05G10040 N 0.712
ONIVA05G11840 Oryza nivara ONIVA05G11840 N 0.712
ORUFI05G12300 Oryza rufipogon ORUFI05G12300 N 0.712
OS05G0316800 Oryza sativa OS05G0316800 N 0.712
Solyc01g095500.2 Solanum lycopersicum Solyc01g095500.2 I 0.711
BRADI3G18070 Brachypodium distachyon BRADI3G18070 I 0.708
PGSC0003DMG400000091 Solanum tuberosum PGSC0003DMG400000091 I 0.705
Ca_20544 Cicer arietinum Ca_20544 I 0.702
GLYMA08G43300 Glycine max GLYMA08G43300 I 0.700
GLYMA18G10290 Glycine max GLYMA18G10290 I 0.699
PGSC0003DMG400012828 Solanum tuberosum PGSC0003DMG400012828 I 0.695
Pavir.Fa01730 Panicum virgatum Pavir.Fa01730 I 0.693
ERF9 Arabidopsis thaliana AT5G44210 D 0.692
Bo2g122260 Brassica oleracea Bo2g122260 I 0.692
Bra036016 Brassica rapa Bra036016 I 0.692
ERF9 Arabidopsis lyrata fgenesh2_kg.8__388__AT5G44210.1 I 0.692
POPTR_0004s04720 Populus trichocarpa POPTR_0004s04720 I 0.692
Bostr.3148s0037 Boechera stricta Bostr.3148s0037 I 0.692
Pavir.Fb00952 Panicum virgatum Pavir.Fb00952 I 0.692
Pavir.Fb01486 Panicum virgatum Pavir.Fb01486 I 0.692
SapurV1A.0012s0580 Salix purpurea SapurV1A.0012s0580 I 0.692
Bra006325 Brassica rapa Bra006325 I 0.691
GSMUA_Achr8G33590_001 Musa acuminata GSMUA_Achr8G33590_001 I 0.691
Cla002268 Citrullus lanatus Cla002268 I 0.691
Cucsa.195660 Cucumis sativus Cucsa.195660 I 0.691
SapurV1A.2062s0030 Salix purpurea SapurV1A.2062s0030 I 0.690
TCM_029820 Theobroma cacao TCM_029820 I 0.689
cassava1589.valid.m1 Manihot esculenta cassava1589.valid.m1 I 0.689
Eucgr.F01164 Eucalyptus grandis Eucgr.F01164 I 0.689
SapurV1A.1244s0010 Salix purpurea SapurV1A.1244s0010 I 0.689
PK02602.1 Cannabis sativa PK02602.1 I 0.689
GLYMA06G35710 Glycine max GLYMA06G35710 I 0.688
GLYMA12G35550 Glycine max GLYMA12G35550 I 0.688
GLYMA13G34920 Glycine max GLYMA13G34920 I 0.688
PGSC0003DMG401013892 Solanum tuberosum PGSC0003DMG401013892 I 0.688
PGSC0003DMG402013892 Solanum tuberosum PGSC0003DMG402013892 I 0.688
Solyc12g005960.1 Solanum lycopersicum Solyc12g005960.1 I 0.688
Bostr.19424s0625 Boechera stricta Bostr.19424s0625 I 0.688
MLOC_24530 Hordeum vulgare MLOC_24530 I 0.687
TRAES3BF075600050CFD_g Triticum aestivum TRAES3BF075600050CFD_g I 0.687
Ca_00327 Cicer arietinum Ca_00327 I 0.687
evm.TU.supercontig_83.80 Carica papaya evm.TU.supercontig_83.80 I 0.687
chr6.CM0114.120.nc Lotus japonicus chr6.CM0114.120.nc I 0.687
GSMUA_AchrUn_randomG16100_001 Musa acuminata GSMUA_AchrUn_randomG16100_001 I 0.686
Si008428m.g Setaria italica Si008428m.g I 0.685
Cagra.0316s0033 Capsella grandiflora Cagra.0316s0033 I 0.685
Carubv10014475m.g Capsella rubella Carubv10014475m.g I 0.685
GSMUA_Achr4G33270_001 Musa acuminata GSMUA_Achr4G33270_001 I 0.684
GSMUA_Achr6G00250_001 Musa acuminata GSMUA_Achr6G00250_001 I 0.684
ERF4 Arabidopsis thaliana AT3G15210 D 0.683
Bra015266 Brassica rapa Bra015266 I 0.683
GSMUA_Achr7G03640_001 Musa acuminata GSMUA_Achr7G03640_001 I 0.683
PGSC0003DMG400026821 Solanum tuberosum PGSC0003DMG400026821 I 0.683
ATERF-4 Arabidopsis lyrata scaffold_301765.1 I 0.683
ERF4_TOBAC Nicotiana tabacum ERF4_TOBAC D 0.683
Cucsa.126880 Cucumis sativus Cucsa.126880 I 0.683
GSMUA_Achr4G23620_001 Musa acuminata GSMUA_Achr4G23620_001 I 0.682
GSMUA_Achr7G00350_001 Musa acuminata GSMUA_Achr7G00350_001 I 0.682
Ca_22534 Cicer arietinum Ca_22534 I 0.682
MTR_2g014340 Medicago truncatula MTR_2g014340 I 0.681
POPTR_0011s05580 Populus trichocarpa POPTR_0011s05580 I 0.681
cassava37846.valid.m1 Manihot esculenta cassava37846.valid.m1 I 0.681
Ciclev10016276m.g Citrus clementina Ciclev10016276m.g I 0.681
Thhalv10003431m.g Eutrema salsugineum Thhalv10003431m.g I 0.681
Cla020000 Citrullus lanatus Cla020000 I 0.680
Gorai.002G067600 Gossypium raimondii Gorai.002G067600 I 0.680
Lus10033664.g Linum usitatissimum Lus10033664.g I 0.680
MTR_2g078680 Medicago truncatula MTR_2g078680 I 0.679
POPTR_0001s40770 Populus trichocarpa POPTR_0001s40770 I 0.679
POPTR_0011s11620 Populus trichocarpa POPTR_0011s11620 I 0.679
cassava46560.m1 Manihot esculenta cassava46560.m1 I 0.679
Cagra.0381s0006 Capsella grandiflora Cagra.0381s0006 I 0.679
Carubv10027246m.g Capsella rubella Carubv10027246m.g I 0.679
SapurV1A.1325s0040 Salix purpurea SapurV1A.1325s0040 I 0.679
GLYMA12G26836 Glycine max GLYMA12G26836 I 0.678
LPERR03G32900 Leersia perrieri LPERR03G32900 I 0.678
MTR_4g078710 Medicago truncatula MTR_4g078710 I 0.678
Q84LQ6_SOLLC Solanum lycopersicum Q84LQ6_SOLLC I 0.678
Q84XB1_SOLLC Solanum lycopersicum Q84XB1_SOLLC I 0.678
Solyc10g009110.1 Solanum lycopersicum Solyc10g009110.1 I 0.678
TCM_031608 Theobroma cacao TCM_031608 I 0.678
VIT_19s0014g02240 Vitis vinifera VIT_19s0014g02240 I 0.678
Ca_11261 Cicer arietinum Ca_11261 I 0.678
27904.m000217 Ricinus communis 27904.m000217 I 0.678
30190.m011321 Ricinus communis 30190.m011321 I 0.678
cassava20937.m1 Manihot esculenta cassava20937.m1 I 0.678
Aquca_036_00070 Aquilegia coerulea Aquca_036_00070 I 0.678
Ciclev10009484m.g Citrus clementina Ciclev10009484m.g I 0.678
Ciclev10016463m.g Citrus clementina Ciclev10016463m.g I 0.678
evm.TU.supercontig_131.83 Carica papaya evm.TU.supercontig_131.83 I 0.678
evm.TU.supercontig_27.16 Carica papaya evm.TU.supercontig_27.16 I 0.678
gene29738-v1.0-hybrid Fragaria vesca gene29738-v1.0-hybrid I 0.678
Gorai.006G088000 Gossypium raimondii Gorai.006G088000 I 0.678
Gorai.009G375700 Gossypium raimondii Gorai.009G375700 I 0.678
Gorai.010G155900 Gossypium raimondii Gorai.010G155900 I 0.678
Lus10015415.g Linum usitatissimum Lus10015415.g I 0.678
orange1.1g026240m.g Citrus sinensis orange1.1g026240m.g I 0.678
orange1.1g028454m.g Citrus sinensis orange1.1g028454m.g I 0.678
BGIOSGA004611 Oryza indica BGIOSGA004611 I 0.677
BRADI2G52370 Brachypodium distachyon BRADI2G52370 I 0.677
GSMUA_Achr8G03550_001 Musa acuminata GSMUA_Achr8G03550_001 I 0.677
LPERR01G29260 Leersia perrieri LPERR01G29260 I 0.677
OBART01G33870 Oryza barthii OBART01G33870 I 0.677
OGLUM01G38110 Oryza glumaepatula OGLUM01G38110 I 0.677
OLONG_021733 Oryza longistaminata OLONG_021733 I 0.677
OMERI01G30710 Oryza meridionalis OMERI01G30710 I 0.677
ONIVA01G38670 Oryza nivara ONIVA01G38670 I 0.677
OPUNC01G32930 Oryza punctata OPUNC01G32930 I 0.677
ORGLA01G0278100 Oryza glaberrima ORGLA01G0278100 I 0.677
ORUFI01G37120 Oryza rufipogon ORUFI01G37120 I 0.677
OS01G0797600 Oryza sativa OS01G0797600 I 0.677
Si002729m.g Setaria italica Si002729m.g I 0.677
Pavir.Ea03147 Panicum virgatum Pavir.Ea03147 I 0.677
Pavir.Eb03458 Panicum virgatum Pavir.Eb03458 I 0.677
PK19363.1 Cannabis sativa PK19363.1 D 0.677