CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Gorai.006G222600
(
Gossypium raimondii
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
IPR001471
Gorai.006G222600
T008569_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
RAP2-4
M01612_2.00
Arabidopsis thaliana
NRCCGHCMNN
NNKGDCGGYN
PBM
Weirauch et al.(2014)
pTH8092
0.761
0.860
ERF055
M06577_2.00
Arabidopsis thaliana
NHDYCACCGHCMHH
DDKGDCGGTGRHDN
Dap-seq
OMalley et al.(2016)
At1g36060_col_a
0.748
0.840
ERF055
M06578_2.00
Arabidopsis thaliana
NHDYCACCGHCMHH
DDKGDCGGTGRHDN
Dap-seq
OMalley et al.(2016)
At1g36060_colamp_a
0.748
0.840
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gorai.006G222600.1
AP2
164
215
KLFRGVRQRHWGKWVAEIRLPRNRTRVWLGTFDTAEAAAMAYDTAAYILRGE
Links
Other
AP2
family TFs
Other
Gossypium raimondii
TFs
418 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
scaffold406-EXSNAP2012.18
Pristionchus exspectatus
scaffold406-EXSNAP2012.18
N