CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Gorai.009G104200
(
Gossypium raimondii
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
IPR001471
Gorai.009G104200
T008643_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Q9XHD4_PETHY
M09737_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AP2A_01
0.843
0.959
RAP2.7
M00845_2.00
Arabidopsis thaliana
KRCGRGGD
HCCYCGYM
PBM
Franco-Zorrilla et al.(2014)
TOE1
0.680
0.933
Q9XHD3_PETHY
M09736_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AP2B_01
0.829
0.949
P93632_MAIZE
M09712_2.00
Zea mays
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GL15_01
0.797
0.837
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gorai.009G104200.1
AP2
155
204
SQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKFRG
Gorai.009G104200.1
AP2
247
298
SKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGR
Gorai.009G104200.2
AP2
155
204
SQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKFRG
Gorai.009G104200.2
AP2
247
275
SKYRGVTLHKCGRWEARMGQFLGKKAYDK
Gorai.009G104200.3
AP2
155
204
SQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKFRG
Gorai.009G104200.3
AP2
247
275
SKYRGVTLHKCGRWEARMGQFLGKKAYDK
Links
Other
AP2
family TFs
Other
Gossypium raimondii
TFs
242 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
28752.m000339
Ricinus communis
28752.m000339
I
0.850
29169.m000017
Ricinus communis
29169.m000017
I
0.831
29805.m001494
Ricinus communis
29805.m001494
I
0.843
AMTR_s00035p00205430
Amborella trichopoda
AMTR_s00035p00205430
I
0.850
AMTR_s00058p00216470
Amborella trichopoda
AMTR_s00058p00216470
I
0.791
AP2
Arabidopsis thaliana
AT4G36920
I
0.843
AP2
Arabidopsis lyrata
fgenesh2_kg.7__332__AT4G36920.1
I
0.843
Aquca_007_00714
Aquilegia coerulea
Aquca_007_00714
I
0.821
Aquca_010_00628
Aquilegia coerulea
Aquca_010_00628
I
0.824
Aquca_027_00133
Aquilegia coerulea
Aquca_027_00133
I
0.850
BGIOSGA013826
Oryza indica
BGIOSGA013826
I
0.819
BGIOSGA017250
Oryza indica
BGIOSGA017250
I
0.833
BGIOSGA018911
Oryza indica
BGIOSGA018911
I
0.850
BGIOSGA020813
Oryza indica
BGIOSGA020813
I
0.820
BGIOSGA025426
Oryza indica
BGIOSGA025426
I
0.824
Bo1g004960
Brassica oleracea
Bo1g004960
I
0.843
Bo4g070350
Brassica oleracea
Bo4g070350
I
0.825
Bo7g064000
Brassica oleracea
Bo7g064000
I
0.785
Bo7g118400
Brassica oleracea
Bo7g118400
I
0.843
Bostr.0568s0140
Boechera stricta
Bostr.0568s0140
I
0.791
Bostr.7867s1579
Boechera stricta
Bostr.7867s1579
I
0.843
Bra011741
Brassica rapa
Bra011741
I
0.843
Bra011939
Brassica rapa
Bra011939
I
0.825
Bra012139
Brassica rapa
Bra012139
I
0.785
Bra017809
Brassica rapa
Bra017809
I
0.843
BRADI1G30337
Brachypodium distachyon
BRADI1G30337
I
0.790
BRADI1G53650
Brachypodium distachyon
BRADI1G53650
I
0.822
BRADI2G37800
Brachypodium distachyon
BRADI2G37800
I
0.844
BRADI5G24100
Brachypodium distachyon
BRADI5G24100
I
0.832
Cagra.0342s0004
Capsella grandiflora
Cagra.0342s0004
I
0.791
Cagra.1809s0003
Capsella grandiflora
Cagra.1809s0003
I
0.827
Cagra.4909s0048
Capsella grandiflora
Cagra.4909s0048
I
0.843
Carubv10004818m.g
Capsella rubella
Carubv10004818m.g
I
0.843
Carubv10025387m.g
Capsella rubella
Carubv10025387m.g
I
0.827
Carubv10026667m.g
Capsella rubella
Carubv10026667m.g
I
0.791
cassava12358.valid.m1
Manihot esculenta
cassava12358.valid.m1
I
0.831
cassava13566.valid.m1
Manihot esculenta
cassava13566.valid.m1
I
0.850
cassava13884.valid.m1
Manihot esculenta
cassava13884.valid.m1
I
0.802
cassava2301.valid.m1
Manihot esculenta
cassava2301.valid.m1
I
0.828
cassava24954.valid.m1
Manihot esculenta
cassava24954.valid.m1
I
0.850
cassava42433.valid.m1
Manihot esculenta
cassava42433.valid.m1
N
0.697
Ca_02499
Cicer arietinum
Ca_02499
I
0.850
Ca_09295
Cicer arietinum
Ca_09295
I
0.843
Ca_12010
Cicer arietinum
Ca_12010
I
0.830
Ca_14618
Cicer arietinum
Ca_14618
I
0.825
chr1.CM0033.300.nc
Lotus japonicus
chr1.CM0033.300.nc
I
0.840
chr3.LjT05P05.30.nd
Lotus japonicus
chr3.LjT05P05.30.nd
I
0.850
Ciclev10011588m.g
Citrus clementina
Ciclev10011588m.g
I
0.774
Ciclev10025364m.g
Citrus clementina
Ciclev10025364m.g
I
0.805
Ciclev10028259m.g
Citrus clementina
Ciclev10028259m.g
I
0.845
Ciclev10031306m.g
Citrus clementina
Ciclev10031306m.g
I
0.832
Cla000716
Citrullus lanatus
Cla000716
I
0.842
Cla018124
Citrullus lanatus
Cla018124
I
0.840
Cla018549
Citrullus lanatus
Cla018549
I
0.799
Cla020549
Citrullus lanatus
Cla020549
I
0.778
Cucsa.051660
Cucumis sativus
Cucsa.051660
I
0.866
Cucsa.065640
Cucumis sativus
Cucsa.065640
I
0.804
Cucsa.102550
Cucumis sativus
Cucsa.102550
I
0.842
Cucsa.307230
Cucumis sativus
Cucsa.307230
I
0.840
Cucsa.367290
Cucumis sativus
Cucsa.367290
I
0.847
Eucgr.B02453
Eucalyptus grandis
Eucgr.B02453
I
0.808
Eucgr.I00892
Eucalyptus grandis
Eucgr.I00892
I
0.825
Eucgr.J02113
Eucalyptus grandis
Eucgr.J02113
I
0.850
evm.TU.supercontig_114.55
Carica papaya
evm.TU.supercontig_114.55
I
0.827
evm.TU.supercontig_139.43
Carica papaya
evm.TU.supercontig_139.43
I
0.783
evm.TU.supercontig_55.116
Carica papaya
evm.TU.supercontig_55.116
I
0.842
F775_32962
Aegilops tauschii
F775_32962
I
0.844
gene18102-v1.0-hybrid
Fragaria vesca
gene18102-v1.0-hybrid
I
0.820
gene23876-v1.0-hybrid
Fragaria vesca
gene23876-v1.0-hybrid
I
0.825
gene25394-v1.0-hybrid
Fragaria vesca
gene25394-v1.0-hybrid
I
0.792
GLYMA01G39520
Glycine max
GLYMA01G39520
I
0.842
GLYMA03G33470
Glycine max
GLYMA03G33470
I
0.847
GLYMA05G18041
Glycine max
GLYMA05G18041
I
0.842
GLYMA11G15650
Glycine max
GLYMA11G15650
I
0.850
GLYMA12G07800
Glycine max
GLYMA12G07800
I
0.850
GLYMA13G40470
Glycine max
GLYMA13G40470
I
0.850
GLYMA15G04930
Glycine max
GLYMA15G04930
I
0.833
GLYMA17G18640
Glycine max
GLYMA17G18640
I
0.842
GLYMA19G36200
Glycine max
GLYMA19G36200
I
0.830
Gorai.002G251500
Gossypium raimondii
Gorai.002G251500
I
0.849
Gorai.003G025900
Gossypium raimondii
Gorai.003G025900
I
0.842
Gorai.004G002100
Gossypium raimondii
Gorai.004G002100
I
0.844
Gorai.007G215900
Gossypium raimondii
Gorai.007G215900
I
0.838
Gorai.008G077800
Gossypium raimondii
Gorai.008G077800
I
0.838
Gorai.011G106200
Gossypium raimondii
Gorai.011G106200
I
0.822
GRMZM2G160730
Zea mays
GRMZM2G160730
I
0.797
GRMZM2G174784
Zea mays
GRMZM2G174784
I
0.833
GRMZM2G176175
Zea mays
GRMZM2G176175
I
0.820
GRMZM2G416701
Zea mays
GRMZM2G416701
I
0.791
GRMZM2G700665
Zea mays
GRMZM2G700665
I
0.845
GRMZM5G862109
Zea mays
GRMZM5G862109
I
0.822
GSMUA_Achr10G03230_001
Musa acuminata
GSMUA_Achr10G03230_001
I
0.849
GSMUA_Achr11G23870_001
Musa acuminata
GSMUA_Achr11G23870_001
I
0.850
GSMUA_Achr1G09830_001
Musa acuminata
GSMUA_Achr1G09830_001
I
0.843
GSMUA_Achr1G26080_001
Musa acuminata
GSMUA_Achr1G26080_001
I
0.842
GSMUA_Achr3G13180_001
Musa acuminata
GSMUA_Achr3G13180_001
I
0.842
GSMUA_Achr3G28340_001
Musa acuminata
GSMUA_Achr3G28340_001
I
0.831
GSMUA_Achr4G06100_001
Musa acuminata
GSMUA_Achr4G06100_001
I
0.811
GSMUA_Achr5G07270_001
Musa acuminata
GSMUA_Achr5G07270_001
I
0.818
GSMUA_Achr5G29290_001
Musa acuminata
GSMUA_Achr5G29290_001
I
0.816
GSMUA_Achr6G33140_001
Musa acuminata
GSMUA_Achr6G33140_001
I
0.831
GSMUA_Achr6G34420_001
Musa acuminata
GSMUA_Achr6G34420_001
I
0.827
GSMUA_Achr8G01980_001
Musa acuminata
GSMUA_Achr8G01980_001
I
0.817
GSMUA_Achr8G18550_001
Musa acuminata
GSMUA_Achr8G18550_001
I
0.837
GSMUA_Achr8G21030_001
Musa acuminata
GSMUA_Achr8G21030_001
I
0.812
GSMUA_Achr9G03060_001
Musa acuminata
GSMUA_Achr9G03060_001
I
0.849
GSMUA_Achr9G04270_001
Musa acuminata
GSMUA_Achr9G04270_001
I
0.811
GSMUA_AchrUn_randomG10320_001
Musa acuminata
GSMUA_AchrUn_randomG10320_001
I
0.826
GSMUA_AchrUn_randomG16200_001
Musa acuminata
GSMUA_AchrUn_randomG16200_001
I
0.841
LjSGA_005424.1
Lotus japonicus
LjSGA_005424.1
I
0.826
LjT39B13.80.nc
Lotus japonicus
LjT39B13.80.nc
I
0.846
LPERR05G01420
Leersia perrieri
LPERR05G01420
I
0.786
LPERR06G18460
Leersia perrieri
LPERR06G18460
I
0.816
Lus10004990.g
Linum usitatissimum
Lus10004990.g
I
0.804
Lus10009374.g
Linum usitatissimum
Lus10009374.g
I
0.832
Lus10015055.g
Linum usitatissimum
Lus10015055.g
I
0.803
Lus10018124.g
Linum usitatissimum
Lus10018124.g
I
0.818
Lus10019331.g
Linum usitatissimum
Lus10019331.g
I
0.832
Lus10019905.g
Linum usitatissimum
Lus10019905.g
I
0.855
Lus10023165.g
Linum usitatissimum
Lus10023165.g
I
0.828
Lus10026477.g
Linum usitatissimum
Lus10026477.g
I
0.855
Lus10036141.g
Linum usitatissimum
Lus10036141.g
I
0.785
Lus10041595.g
Linum usitatissimum
Lus10041595.g
I
0.795
MDP0000137561
Malus domestica
MDP0000137561
I
0.826
MDP0000163645
Malus domestica
MDP0000163645
I
0.839
MDP0000181606
Malus domestica
MDP0000181606
I
0.845
MDP0000200319
Malus domestica
MDP0000200319
I
0.849
mgf005133m
Mimulus guttatus
mgf005133m
I
0.806
mgf009315m
Mimulus guttatus
mgf009315m
I
0.841
mgf010466m
Mimulus guttatus
mgf010466m
I
0.806
mgf021945m
Mimulus guttatus
mgf021945m
I
0.841
MLOC_43041
Hordeum vulgare
MLOC_43041
I
0.789
MLOC_43575
Hordeum vulgare
MLOC_43575
I
0.825
MTR_2g093060
Medicago truncatula
MTR_2g093060
I
0.846
MTR_4g061200
Medicago truncatula
MTR_4g061200
I
0.825
MTR_4g094868
Medicago truncatula
MTR_4g094868
I
0.843
MTR_5g016810
Medicago truncatula
MTR_5g016810
I
0.842
MTR_7g100590
Medicago truncatula
MTR_7g100590
I
0.830
OB03G45870
Oryza brachyantha
OB03G45870
I
0.811
OB06G29960
Oryza brachyantha
OB06G29960
I
0.820
OBART07G08110
Oryza barthii
OBART07G08110
I
0.824
OGLUM03G38790
Oryza glumaepatula
OGLUM03G38790
I
0.819
OGLUM04G27380
Oryza glumaepatula
OGLUM04G27380
I
0.833
OGLUM06G23380
Oryza glumaepatula
OGLUM06G23380
I
0.820
OGLUM07G07330
Oryza glumaepatula
OGLUM07G07330
I
0.824
OLONG_021321
Oryza longistaminata
OLONG_021321
I
0.824
OLONG_026757
Oryza longistaminata
OLONG_026757
I
0.786
OMERI03G35820
Oryza meridionalis
OMERI03G35820
I
0.819
OMERI04G22900
Oryza meridionalis
OMERI04G22900
I
0.833
OMERI06G22190
Oryza meridionalis
OMERI06G22190
I
0.820
OMERI07G06850
Oryza meridionalis
OMERI07G06850
I
0.824
ONIVA03G25220
Oryza nivara
ONIVA03G25220
I
0.824
ONIVA03G40610
Oryza nivara
ONIVA03G40610
I
0.819
ONIVA04G25920
Oryza nivara
ONIVA04G25920
I
0.833
ONIVA06G26190
Oryza nivara
ONIVA06G26190
I
0.820
OPUNC03G36030
Oryza punctata
OPUNC03G36030
I
0.819
OPUNC04G24930
Oryza punctata
OPUNC04G24930
I
0.833
OPUNC05G01480
Oryza punctata
OPUNC05G01480
I
0.850
OPUNC06G19990
Oryza punctata
OPUNC06G19990
I
0.821
OPUNC07G07690
Oryza punctata
OPUNC07G07690
I
0.824
orange1.1g009943m.g
Citrus sinensis
orange1.1g009943m.g
I
0.805
orange1.1g010454m.g
Citrus sinensis
orange1.1g010454m.g
I
0.850
orange1.1g010763m.g
Citrus sinensis
orange1.1g010763m.g
I
0.832
ORGLA04G0237800
Oryza glaberrima
ORGLA04G0237800
I
0.833
ORGLA05G0015400
Oryza glaberrima
ORGLA05G0015400
I
0.850
ORGLA07G0068600
Oryza glaberrima
ORGLA07G0068600
I
0.824
ORUFI03G40640
Oryza rufipogon
ORUFI03G40640
I
0.819
ORUFI04G29120
Oryza rufipogon
ORUFI04G29120
I
0.833
ORUFI06G23930
Oryza rufipogon
ORUFI06G23930
I
0.820
ORUFI07G08180
Oryza rufipogon
ORUFI07G08180
I
0.824
OS03G0818800
Oryza sativa
OS03G0818800
I
0.775
OS05G0121600
Oryza sativa
OS05G0121600
I
0.850
OS07G0235800
Oryza sativa
OS07G0235800
I
0.824
P93632_MAIZE
Zea mays
P93632_MAIZE
D
0.797
Pavir.Ba03394
Panicum virgatum
Pavir.Ba03394
I
0.820
Pavir.Da00466
Panicum virgatum
Pavir.Da00466
I
0.790
Pavir.J11433
Panicum virgatum
Pavir.J11433
I
0.850
Pavir.J23348
Panicum virgatum
Pavir.J23348
I
0.850
Pavir.J23520
Panicum virgatum
Pavir.J23520
I
0.822
Pavir.J27340
Panicum virgatum
Pavir.J27340
I
0.806
Pavir.J37968
Panicum virgatum
Pavir.J37968
I
0.799
Pavir.J41060
Panicum virgatum
Pavir.J41060
I
0.822
PDK_20s1506731g001
Phoenix dactylifera
PDK_20s1506731g001
I
0.850
PGSC0003DMG400004006
Solanum tuberosum
PGSC0003DMG400004006
I
0.842
PGSC0003DMG400006482
Solanum tuberosum
PGSC0003DMG400006482
I
0.842
PGSC0003DMG400011046
Solanum tuberosum
PGSC0003DMG400011046
I
0.827
PGSC0003DMG400025390
Solanum tuberosum
PGSC0003DMG400025390
I
0.850
PGSC0003DMG400025479
Solanum tuberosum
PGSC0003DMG400025479
I
0.829
PGSC0003DMG400027904
Solanum tuberosum
PGSC0003DMG400027904
I
0.849
PK02403.1
Cannabis sativa
PK02403.1
I
0.842
PK07183.1
Cannabis sativa
PK07183.1
I
0.847
PK14490.1
Cannabis sativa
PK14490.1
I
0.708
Pm000974
Prunus mume
Pm000974
I
0.845
Pm002492
Prunus mume
Pm002492
I
0.849
Pm030172
Prunus mume
Pm030172
I
0.825
POPTR_0005s18400
Populus trichocarpa
POPTR_0005s18400
I
0.833
POPTR_0006s13460
Populus trichocarpa
POPTR_0006s13460
I
0.844
POPTR_0007s10780
Populus trichocarpa
POPTR_0007s10780
I
0.842
POPTR_0008s04490
Populus trichocarpa
POPTR_0008s04490
I
0.840
POPTR_0016s08530
Populus trichocarpa
POPTR_0016s08530
I
0.849
PRUPE_ppa003783mg
Prunus persica
PRUPE_ppa003783mg
I
0.825
PRUPE_ppa005230mg
Prunus persica
PRUPE_ppa005230mg
I
0.849
Q9XHD3_PETHY
Petunia x hybrida
Q9XHD3_PETHY
D
0.829
Q9XHD4_PETHY
Petunia x hybrida
Q9XHD4_PETHY
D
0.843
RAP2.7
Arabidopsis thaliana
AT2G28550
D
0.827
RAP2.7
Vitis vinifera
VIT_06s0004g03590
I
0.850
SapurV1A.0038s0220
Salix purpurea
SapurV1A.0038s0220
I
0.846
SapurV1A.0209s0320
Salix purpurea
SapurV1A.0209s0320
I
0.844
SapurV1A.0247s0170
Salix purpurea
SapurV1A.0247s0170
I
0.849
SapurV1A.0689s0070
Salix purpurea
SapurV1A.0689s0070
I
0.842
SapurV1A.1340s0010
Salix purpurea
SapurV1A.1340s0010
I
0.821
Sb01g003400
Sorghum bicolor
Sb01g003400
I
0.822
Sb02g007000
Sorghum bicolor
Sb02g007000
I
0.820
Sb06g030670
Sorghum bicolor
Sb06g030670
I
0.833
Sb10g025053
Sorghum bicolor
Sb10g025053
I
0.797
Si006371m.g
Setaria italica
Si006371m.g
I
0.704
Si012635m.g
Setaria italica
Si012635m.g
I
0.833
Si025305m.g
Setaria italica
Si025305m.g
I
0.850
Si029636m.g
Setaria italica
Si029636m.g
I
0.820
Si036068m.g
Setaria italica
Si036068m.g
I
0.822
Solyc02g064960.2
Solanum lycopersicum
Solyc02g064960.2
I
0.836
Solyc02g093150.2
Solanum lycopersicum
Solyc02g093150.2
I
0.842
Solyc03g044300.2
Solanum lycopersicum
Solyc03g044300.2
I
0.843
Solyc06g075510.2
Solanum lycopersicum
Solyc06g075510.2
I
0.831
Solyc10g084340.1
Solanum lycopersicum
Solyc10g084340.1
I
0.843
Solyc11g072600.1
Solanum lycopersicum
Solyc11g072600.1
I
0.708
TCM_000665
Theobroma cacao
TCM_000665
I
0.838
TCM_022077
Theobroma cacao
TCM_022077
I
0.849
TCM_042000
Theobroma cacao
TCM_042000
I
0.844
Thhalv10004742m.g
Eutrema salsugineum
Thhalv10004742m.g
I
0.801
Thhalv10016626m.g
Eutrema salsugineum
Thhalv10016626m.g
I
0.827
Thhalv10025268m.g
Eutrema salsugineum
Thhalv10025268m.g
I
0.715
TOE3
Arabidopsis thaliana
AT5G67180
I
0.791
TOE3
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_8002628
I
0.791
TOE3
Vitis vinifera
VIT_07s0031g00220
I
0.842
Traes_1AS_90F3120F8
Triticum aestivum
Traes_1AS_90F3120F8
I
0.844
Traes_1BS_E68807072
Triticum aestivum
Traes_1BS_E68807072
I
0.844
Traes_1DS_2BB06F54C
Triticum aestivum
Traes_1DS_2BB06F54C
I
0.844
Traes_7DL_7B0ABD21E
Triticum aestivum
Traes_7DL_7B0ABD21E
I
0.684
VIT_08s0040g03180
Vitis vinifera
VIT_08s0040g03180
I
0.849
VIT_13s0019g03550
Vitis vinifera
VIT_13s0019g03550
I
0.827