Lus10003740.g (Linum usitatissimum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Lus10003740.g T008735_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF014
M06581_2.00 		Arabidopsis thaliana
YCDYCDCCACCGHCD
HGDCGGTGGHGRHGR		 Dap-seq
OMalley et al.(2016)
AT1G44830_col_a 		0.796 0.980
ERF012
M06570_2.00 		Arabidopsis thaliana
NHNNHNHHDHHDCCACCGHC
GDCGGTGGHDDHDDNDNNDN		 Dap-seq
OMalley et al.(2016)
DREB26_col_a 		0.782 0.940
ERF013
M06601_2.00 		Arabidopsis thaliana
DYCACCGHCAHHDNHNNNNNN
NNNNNNDNHDDTGDCGGTGRH		 Dap-seq
OMalley et al.(2016)
At1g77640_col_a 		0.763 0.940
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10003740 AP2 34 85

Links

Other AP2 family TFs
Other Linum usitatissimum TFs

127 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R012729 Calypte anna Aan_R012729 I
Afo_R015662 Aptenodytes forsteri Afo_R015662 I
Alligator_sinensis_CCG005309.1 Alligator sinensis Alligator_sinensis_CCG005309.1 I
BGLB002091 Biomphalaria glabrata BGLB002091 N
Brh_R011794 Buceros rhinoceros Brh_R011794 I
ENSAMEG00000008882 Ailuropoda melanoleuca ENSAMEG00000008882 I
ENSAMXG00000003341 Astyanax mexicanus ENSAMXG00000003341 I
ENSAPLG00000013878 Anas platyrhynchos ENSAPLG00000013878 I
NFKB1 Bos taurus ENSBTAG00000020270 I
ENSBTAP00000027016-D1 Bos grunniens ENSBTAP00000027016-D1 I
NFKB1 Canis familiaris ENSCAFG00000010730 I
NFKB1 Callithrix jacchus ENSCJAG00000015382 I
NFKB1 Cavia porcellus ENSCPOG00000007789 I
ENSCSAG00000004049 Chlorocebus sabaeus ENSCSAG00000004049 I
ENSCSAVG00000003063 Ciona savignyi ENSCSAVG00000003063 N
nfkb1 Danio rerio ENSDARG00000105261 I
NFKB1 Dasypus novemcinctus ENSDNOG00000006855 I
Nfkb1 Dipodomys ordii ENSDORG00000007447 I
NFKB1 Equus caballus ENSECAG00000015042 I
ENSFALG00000008136 Ficedula albicollis ENSFALG00000008136 I
NFKB1 Felis catus ENSFCAG00000007557 I
NFKB1 Homo sapiens ENSG00000109320 D
NFKB1 Gasterosteus aculeatus ENSGACG00000016876 I
NFKB1 Gallus gallus ENSGALG00000012304 I
NFKB1 Gorilla gorilla ENSGGOG00000009071 I
ENSGMOG00000007506 Gadus morhua ENSGMOG00000007506 N
ENSLACG00000002751 Latimeria chalumnae ENSLACG00000002751 I
ENSLACG00000016308 Latimeria chalumnae ENSLACG00000016308 N
NFKB2 Loxodonta africana ENSLAFG00000006805 I
NFKB1 Loxodonta africana ENSLAFG00000009344 I
ENSLOCG00000012080 Lepisosteus oculatus ENSLOCG00000012080 I
ENSLOCG00000012413 Lepisosteus oculatus ENSLOCG00000012413 N
ENSMEUG00000001334 Macropus eugenii ENSMEUG00000001334 I
NFKB1 Meleagris gallopavo ENSMGAG00000011299 I
NFKB1 Myotis lucifugus ENSMLUG00000005986 I
NFKB1 Macaca mulatta ENSMMUG00000003736 I
NFKB1 Monodelphis domestica ENSMODG00000020672 I
ENSMPUG00000009413 Mustela putorius furo ENSMPUG00000009413 I
Nfkb1 Mus musculus ENSMUSG00000028163 D
ENSNLEG00000013325 Nomascus leucogenys ENSNLEG00000013325 I
ENSOANG00000022123 Ornithorhynchus anatinus ENSOANG00000022123 I
ENSOANG00000028755 Ornithorhynchus anatinus ENSOANG00000028755 I
ENSOARG00000012718 Ovis aries ENSOARG00000012718 I
NFKB1 Oryctolagus cuniculus ENSOCUG00000021712 I
NFKB1 Otolemur garnettii ENSOGAG00000012840 I
ENSONIG00000004349 Oreochromis niloticus ENSONIG00000004349 I
ENSONIG00000007023 Oreochromis niloticus ENSONIG00000007023 N
NFKB1 Ochotona princeps ENSOPRG00000005212 I
ENSOPRG00000014981 Ochotona princeps ENSOPRG00000014981 I
nfkb2 Oryzias latipes ENSORLG00000002942 N
ENSP00000226574 Macaca fascicularis ENSP00000226574 I
ENSPANG00000023882 Papio anubis ENSPANG00000023882 I
NFKB1 Procavia capensis ENSPCAG00000008172 I
NFKB2 Procavia capensis ENSPCAG00000011503 I
ENSPFOG00000016918 Poecilia formosa ENSPFOG00000016918 I
ENSPMAG00000006461 Petromyzon marinus ENSPMAG00000006461 N
ENSPPYG00000014965 Pongo abelii ENSPPYG00000014965 I
ENSPSIG00000008515 Pelodiscus sinensis ENSPSIG00000008515 I
NFKB1 Pan troglodytes ENSPTRG00000016320 I
NFKB1 Pteropus vampyrus ENSPVAG00000002722 I
Nfkb1 Rattus norvegicus ENSRNOG00000023258 I
NFKB2 Sorex araneus ENSSARG00000006180 I
ENSSHAG00000007374 Sarcophilus harrisii ENSSHAG00000007374 I
NFKB1 Sus scrofa ENSSSCG00000030957 I
ENSSTOG00000011445 Ictidomys tridecemlineatus ENSSTOG00000011445 I
NFKB1 Tupaia belangeri ENSTBEG00000003520 I
NFKB1 Taeniopygia guttata ENSTGUG00000003595 I
ENSTNIG00000002231 Tetraodon nigroviridis ENSTNIG00000002231 N
NFKB1 Tursiops truncatus ENSTTRG00000010852 I
NFKB1 Vicugna pacos ENSVPAG00000000280 I
ENSXMAG00000015369 Xiphophorus maculatus ENSXMAG00000015369 I
Gfo_R000994 Geospiza fortis Gfo_R000994 I
Myotis_brandtii_NFKB1_10013135 Myotis brandtii Myotis_brandtii_NFKB1_10013135 I
Ogr10707 Ophisaurus gracilis Ogr10707 I
Pvit_05196 Pogona vitticeps Pvit_05196 I
Tal_R004861 Tyto alba Tal_R004861 I
nfkb2.S Xenopus laevis XB-GENE-970090 N
nfkb1 Xenopus tropicalis XB-GENE-985746 I
nfkb1.L Xenopus laevis XB-GENE-985749 I