CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Lus10021678.g
(
Linum usitatissimum
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
IPR001471
Lus10021678.g
T008833_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ERF118
M01047_2.00
Arabidopsis thaliana
NCGCCGYNN
NNRCGGCGN
PBM
Sullivan et al.(2014)
pTH7330
0.689
0.720
ERF118
M06591_2.00
Arabidopsis thaliana
YHDYCKCCGCCGYHD
HDRCGGCGGMGRHDR
Dap-seq
OMalley et al.(2016)
CRF10_col100_a
0.689
0.720
ERF118
M06592_2.00
Arabidopsis thaliana
NGDATCHNDGATTCNNH
DNNGAATCHNDGATHCN
Dap-seq
OMalley et al.(2016)
CRF10_colamp_a
0.689
0.720
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Lus10021678
AP2
108
158
MPVGVRQRKWGKWAAEIRNPRTKSRQWLGTFSTLEEAAQAYEAKKREYDAA
Links
Other
AP2
family TFs
Other
Linum usitatissimum
TFs
17 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Lus10035018.g
Linum usitatissimum
Lus10035018.g
N
0.791
Lus10041456.g
Linum usitatissimum
Lus10041456.g
N
0.728
Lus10034316.g
Linum usitatissimum
Lus10034316.g
I
0.721
Thhalv10019722m.g
Eutrema salsugineum
Thhalv10019722m.g
I
0.719
cassava35757.valid.m1
Manihot esculenta
cassava35757.valid.m1
I
0.701
cassava35758.valid.m1
Manihot esculenta
cassava35758.valid.m1
I
0.701
Bostr.26959s0035
Boechera stricta
Bostr.26959s0035
I
0.696
27524.m000298
Ricinus communis
27524.m000298
I
0.695
cassava43300.valid.m1
Manihot esculenta
cassava43300.valid.m1
I
0.695
ERF118
Arabidopsis thaliana
AT1G68550
D
0.689
POPTR_0010s13540
Populus trichocarpa
POPTR_0010s13540
I
0.687
TCM_011811
Theobroma cacao
TCM_011811
I
0.687
Gorai.008G183300
Gossypium raimondii
Gorai.008G183300
I
0.687
SapurV1A.0078s0470
Salix purpurea
SapurV1A.0078s0470
I
0.687
fgenesh2_kg.2__1107__AT1G68550.2
Arabidopsis lyrata
fgenesh2_kg.2__1107__AT1G68550.2
I
0.684
POPTR_0008s11900
Populus trichocarpa
POPTR_0008s11900
I
0.684
SapurV1A.0079s0190
Salix purpurea
SapurV1A.0079s0190
I
0.684