CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.Fa00741
(
Panicum virgatum
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
IPR001471
Pavir.Fa00741
T009438_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ERF017
M06568_2.00
Arabidopsis thaliana
NHNYCRCCGWCMWH
DWKGWCGGYGRNDN
Dap-seq
OMalley et al.(2016)
At1g19210_col_a
0.691
0.800
ERF017
M06569_2.00
Arabidopsis thaliana
NNNHNNCRCCGWCMW
WKGWCGGYGNNDNNN
Dap-seq
OMalley et al.(2016)
At1g19210_colamp_a
0.691
0.800
ERF018
M00842_2.00
Arabidopsis thaliana
HRCCGDCMN
NKGHCGGYD
PBM
Franco-Zorrilla et al.(2014)
ORA47
0.689
0.780
ERF018
M01610_2.00
Arabidopsis thaliana
NRCCGNCHN
NDGNCGGYN
PBM
Weirauch et al.(2014)
pTH7215
0.689
0.780
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Fa00741.1.p
AP2
22
73
RRYKGVRLRKWGRWVSEIRMPNSRERIWLGSYESAEKAARAFDAAAVCLRGS
Links
Other
AP2
family TFs
Other
Panicum virgatum
TFs
117 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
BGIOSGA028781
Oryza indica
BGIOSGA028781
I
0.809
GRMZM2G163745
Zea mays
GRMZM2G163745
I
0.809
LPERR08G14000
Leersia perrieri
LPERR08G14000
I
0.809
OB08G24280
Oryza brachyantha
OB08G24280
I
0.809
OBART08G16950
Oryza barthii
OBART08G16950
I
0.809
OGLUM08G17690
Oryza glumaepatula
OGLUM08G17690
I
0.809
ONIVA08G18470
Oryza nivara
ONIVA08G18470
I
0.809
OPUNC08G14840
Oryza punctata
OPUNC08G14840
I
0.809
ORUFI08G18850
Oryza rufipogon
ORUFI08G18850
I
0.809
OS08G0454000
Oryza sativa
OS08G0454000
I
0.809
Si015027m.g
Setaria italica
Si015027m.g
I
0.809
Pavir.Fb01602
Panicum virgatum
Pavir.Fb01602
I
0.809
BRADI3G37544
Brachypodium distachyon
BRADI3G37544
I
0.800
TRAES3BF084200010CFD_g
Triticum aestivum
TRAES3BF084200010CFD_g
I
0.799
F775_23111
Aegilops tauschii
F775_23111
I
0.797
Sb07g022265
Sorghum bicolor
Sb07g022265
I
0.764
Eucgr.C03175
Eucalyptus grandis
Eucgr.C03175
I
0.752
GSMUA_Achr9G14360_001
Musa acuminata
GSMUA_Achr9G14360_001
I
0.750
GSMUA_Achr5G05160_001
Musa acuminata
GSMUA_Achr5G05160_001
I
0.742
MTR_3g105480
Medicago truncatula
MTR_3g105480
I
0.740
MTR_3g105510
Medicago truncatula
MTR_3g105510
I
0.740
Si008104m.g
Setaria italica
Si008104m.g
I
0.739
PGSC0003DMG400030781
Solanum tuberosum
PGSC0003DMG400030781
I
0.736
Solyc06g054630.1
Solanum lycopersicum
Solyc06g054630.1
I
0.736
Cla011318
Citrullus lanatus
Cla011318
I
0.709
Cucsa.141980
Cucumis sativus
Cucsa.141980
I
0.709
Gorai.010G091100
Gossypium raimondii
Gorai.010G091100
I
0.709
Pavir.J00593
Panicum virgatum
Pavir.J00593
I
0.707
Traes_6DL_FA861D610
Triticum aestivum
Traes_6DL_FA861D610
I
0.706
Bo8g068370
Brassica oleracea
Bo8g068370
I
0.705
Bra016518
Brassica rapa
Bra016518
I
0.705
Si019636m.g
Setaria italica
Si019636m.g
I
0.705
Pavir.Aa00296
Panicum virgatum
Pavir.Aa00296
I
0.705
Gorai.001G019100
Gossypium raimondii
Gorai.001G019100
I
0.702
GRMZM2G097081
Zea mays
GRMZM2G097081
I
0.700
POPTR_0006s14100
Populus trichocarpa
POPTR_0006s14100
I
0.699
PRUPE_ppa011336mg
Prunus persica
PRUPE_ppa011336mg
I
0.699
TCM_037415
Theobroma cacao
TCM_037415
I
0.699
Pm027117
Prunus mume
Pm027117
I
0.699
29739.m003716
Ricinus communis
29739.m003716
I
0.699
cassava25057.valid.m1
Manihot esculenta
cassava25057.valid.m1
I
0.699
Aquca_076_00039
Aquilegia coerulea
Aquca_076_00039
I
0.699
Eucgr.C00780
Eucalyptus grandis
Eucgr.C00780
I
0.699
Lus10009798.g
Linum usitatissimum
Lus10009798.g
I
0.699
Lus10038082.g
Linum usitatissimum
Lus10038082.g
I
0.699
OBART06G06190
Oryza barthii
OBART06G06190
I
0.698
OGLUM06G06520
Oryza glumaepatula
OGLUM06G06520
I
0.698
OMERI03G32210
Oryza meridionalis
OMERI03G32210
I
0.698
ONIVA06G07190
Oryza nivara
ONIVA06G07190
I
0.698
ORGLA06G0057200
Oryza glaberrima
ORGLA06G0057200
I
0.698
TCM_037486
Theobroma cacao
TCM_037486
I
0.698
Ciclev10010348m.g
Citrus clementina
Ciclev10010348m.g
I
0.698
VIT_11s0016g00660
Vitis vinifera
VIT_11s0016g00660
I
0.697
BGIOSGA022471
Oryza indica
BGIOSGA022471
I
0.696
ORUFI06G06480
Oryza rufipogon
ORUFI06G06480
I
0.696
POPTR_0006s14090
Populus trichocarpa
POPTR_0006s14090
I
0.695
Bo8g102870
Brassica oleracea
Bo8g102870
I
0.694
Bra031069
Brassica rapa
Bra031069
I
0.694
POPTR_0006s23480
Populus trichocarpa
POPTR_0006s23480
I
0.693
Lus10033420.g
Linum usitatissimum
Lus10033420.g
I
0.693
Lus10034885.g
Linum usitatissimum
Lus10034885.g
I
0.693
SapurV1A.0373s0040
Salix purpurea
SapurV1A.0373s0040
I
0.693
SapurV1A.2229s0010
Salix purpurea
SapurV1A.2229s0010
I
0.693
ERF017
Arabidopsis thaliana
AT1G19210
D
0.691
fgenesh2_kg.1__2098__AT1G19210.1
Arabidopsis lyrata
fgenesh2_kg.1__2098__AT1G19210.1
I
0.691
Cagra.1961s0079
Capsella grandiflora
Cagra.1961s0079
I
0.691
Carubv10011394m.g
Capsella rubella
Carubv10011394m.g
I
0.691
SapurV1A.0521s0050
Salix purpurea
SapurV1A.0521s0050
I
0.691
ERF018
Arabidopsis thaliana
AT1G74930
D
0.689
ORA47
Arabidopsis lyrata
fgenesh2_kg.2__1761__AT1G74930.1
I
0.689
GSMUA_AchrUn_randomG02200_001
Musa acuminata
GSMUA_AchrUn_randomG02200_001
I
0.689
Bostr.3288s0141
Boechera stricta
Bostr.3288s0141
I
0.689
Thhalv10009812m.g
Eutrema salsugineum
Thhalv10009812m.g
I
0.689
GLYMA04G06095
Glycine max
GLYMA04G06095
I
0.688
GLYMA06G06101
Glycine max
GLYMA06G06101
I
0.688
ORA47
Vitis vinifera
VIT_04s0008g02230
I
0.688
Ca_01683
Cicer arietinum
Ca_01683
I
0.688
evm.TU.supercontig_266.5
Carica papaya
evm.TU.supercontig_266.5
I
0.688
gene12919-v1.0-hybrid
Fragaria vesca
gene12919-v1.0-hybrid
I
0.688
MDP0000649022
Malus domestica
MDP0000649022
I
0.688
Gorai.004G285900
Gossypium raimondii
Gorai.004G285900
I
0.687
SapurV1A.0057s0300
Salix purpurea
SapurV1A.0057s0300
I
0.687
Bo6g119120
Brassica oleracea
Bo6g119120
I
0.686
cassava10604.m1
Manihot esculenta
cassava10604.m1
I
0.686
mgf024162m
Mimulus guttatus
mgf024162m
I
0.686
Eucgr.C03297
Eucalyptus grandis
Eucgr.C03297
I
0.686
BGIOSGA005486
Oryza indica
BGIOSGA005486
I
0.685
OGLUM02G35980
Oryza glumaepatula
OGLUM02G35980
I
0.685
OMERI01G37050
Oryza meridionalis
OMERI01G37050
I
0.685
ONIVA02G36910
Oryza nivara
ONIVA02G36910
I
0.685
OPUNC02G32160
Oryza punctata
OPUNC02G32160
I
0.685
ORGLA02G0301600
Oryza glaberrima
ORGLA02G0301600
I
0.685
ORUFI02G36340
Oryza rufipogon
ORUFI02G36340
I
0.685
OS02G0781300
Oryza sativa
OS02G0781300
I
0.685
Gorai.001G016800
Gossypium raimondii
Gorai.001G016800
I
0.685
OGLUM06G06550
Oryza glumaepatula
OGLUM06G06550
N
0.684
Ciclev10009540m.g
Citrus clementina
Ciclev10009540m.g
I
0.684
orange1.1g029068m.g
Citrus sinensis
orange1.1g029068m.g
I
0.684
29739.m003647
Ricinus communis
29739.m003647
I
0.683
Bo6g086740
Brassica oleracea
Bo6g086740
I
0.682
Bra003780
Brassica rapa
Bra003780
I
0.682
mgf021940m
Mimulus guttatus
mgf021940m
I
0.682
Cagra.0402s0035
Capsella grandiflora
Cagra.0402s0035
I
0.682
Carubv10020965m.g
Capsella rubella
Carubv10020965m.g
I
0.682
OBART06G06230
Oryza barthii
OBART06G06230
N
0.681
ORGLA06G0057400
Oryza glaberrima
ORGLA06G0057400
N
0.681
Bra015882
Brassica rapa
Bra015882
I
0.680
GLYMA09G08330
Glycine max
GLYMA09G08330
I
0.680
GLYMA15G19910
Glycine max
GLYMA15G19910
I
0.680
MTR_1g014800
Medicago truncatula
MTR_1g014800
I
0.680
Cucsa.271180
Cucumis sativus
Cucsa.271180
I
0.679
Cla007584
Citrullus lanatus
Cla007584
I
0.678
Bostr.7128s0526
Boechera stricta
Bostr.7128s0526
I
0.678
POPTR_0018s08320
Populus trichocarpa
POPTR_0018s08320
I
0.677
Ca_09124
Cicer arietinum
Ca_09124
I
0.677
cassava20547.m1
Manihot esculenta
cassava20547.m1
I
0.677
chr5.CM0040.40.nd
Lotus japonicus
chr5.CM0040.40.nd
I
0.677