CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.Ga01093
(
Panicum virgatum
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
IPR001471
Pavir.Ga01093
T009465_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ERF034
M06614_2.00
Arabidopsis thaliana
NHNYCACCGACANHD
HDNTGTCGGTGRNDN
Dap-seq
OMalley et al.(2016)
At2g44940_col_a
0.786
0.940
ERF034
M06615_2.00
Arabidopsis thaliana
NDBCACCGACANH
DNTGTCGGTGVHN
Dap-seq
OMalley et al.(2016)
At2g44940_colamp_a
0.786
0.940
ERF035
M06631_2.00
Arabidopsis thaliana
YCACCGACANWDNH
DNHWNTGTCGGTGR
Dap-seq
OMalley et al.(2016)
AT3G60490_col_a
0.771
0.900
ERF035
M06632_2.00
Arabidopsis thaliana
NNBCACCGACAHWNNN
NNNWDTGTCGGTGVNN
Dap-seq
OMalley et al.(2016)
AT3G60490_colamp_a
0.771
0.900
Q8LKX0_MAIZE
M09722_2.00
Zea mays
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DBF2_01
0.758
0.940
ERF043
M01627_2.00
Arabidopsis thaliana
YRCCGACA
TGTCGGYR
PBM
Weirauch et al.(2014)
pTH7413
0.758
0.880
ERF043
M06651_2.00
Arabidopsis thaliana
NNYCACCGACANHNNN
NNNDNTGTCGGTGRNN
Dap-seq
OMalley et al.(2016)
At4g32800_colamp_a
0.758
0.880
ERF043
M06652_2.00
Arabidopsis thaliana
NNYCACCGACANHNNH
DNNDNTGTCGGTGRNN
Dap-seq
OMalley et al.(2016)
At4g32800_col
0.758
0.880
Q5MAR7_BRANA
M09742_2.00
Brassica napus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREBIII1_01
0.745
0.920
Q3HS44_BRANA
M09741_2.00
Brassica napus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREBIII2_01
0.745
0.920
Q3HS43_BRANA
M09740_2.00
Brassica napus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREBIII3_01
0.745
0.920
AT3G16280
M06618_2.00
Arabidopsis thaliana
NDNCACCGACANHN
NDNTGTCGGTGNHN
Dap-seq
OMalley et al.(2016)
AT3G16280_col_a
0.735
0.860
AT3G16280
M06619_2.00
Arabidopsis thaliana
BCACCGACAHWNNN
NNNWDTGTCGGTGV
Dap-seq
OMalley et al.(2016)
AT3G16280_colamp_a
0.735
0.860
ERF039
M01620_2.00
Arabidopsis thaliana
NNRCCGACDN
NHGTCGGYNN
PBM
Weirauch et al.(2014)
pTH8101
0.729
0.900
ERF039
M06635_2.00
Arabidopsis thaliana
HNNHDYCRCCGMCRN
NYGKCGGYGRHDNND
Dap-seq
OMalley et al.(2016)
At4g16750_col_a
0.729
0.900
ERF039
M06636_2.00
Arabidopsis thaliana
NNNNNNYCACCGACAHH
DDTGTCGGTGRNNNNNN
Dap-seq
OMalley et al.(2016)
At4g16750_colamp_a
0.729
0.900
ERF038
M06608_2.00
Arabidopsis thaliana
NHNHHDYCRCCGACA
TGTCGGYGRHDDNDN
Dap-seq
OMalley et al.(2016)
ERF38_col_a
0.729
0.880
ERF037
M00843_2.00
Arabidopsis thaliana
NRCCGACRN
NYGTCGGYN
PBM
Franco-Zorrilla et al.(2014)
At1g77200
0.718
0.880
ERF037
M06599_2.00
Arabidopsis thaliana
YCRCCGACAHHNNH
DNNDDTGTCGGYGR
Dap-seq
OMalley et al.(2016)
AT1G77200_col_a
0.718
0.880
ERF037
M06600_2.00
Arabidopsis thaliana
NNYACCGACAHN
NDTGTCGGTRNN
Dap-seq
OMalley et al.(2016)
AT1G77200_colamp_a
0.718
0.880
Q3HS42_BRANA
M09739_2.00
Brassica napus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREBIII4_01
0.702
0.900
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Ga01093.1.p
AP2
43
94
PTYRGVRMRSWGKWVSEIREPRKKSRIWLGTFATAEMAARAHDVAALAIKGR
Links
Other
AP2
family TFs
Other
Panicum virgatum
TFs
446 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy