CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.Gb00885
(
Panicum virgatum
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
IPR001471
Pavir.Gb00885
T009479_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Gb00885.1.p
AP2
16
66
PYYRGIRSRSGKWVSEIREPRKTRRIWLGTFPTAEMAAVAYDVAARALRGP
Links
Other
AP2
family TFs
Other
Panicum virgatum
TFs
15 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Si011086m.g
Setaria italica
Si011086m.g
N
0.744
GRMZM2G368838
Zea mays
GRMZM2G368838
N
0.732
Pavir.Ga01110
Panicum virgatum
Pavir.Ga01110
N
0.732
Sb06g025890
Sorghum bicolor
Sb06g025890
N
0.723
Pavir.Ga00932
Panicum virgatum
Pavir.Ga00932
N
0.720
OPUNC04G19950
Oryza punctata
OPUNC04G19950
N
0.709
BGIOSGA016949
Oryza indica
BGIOSGA016949
N
0.702
OBART04G22210
Oryza barthii
OBART04G22210
N
0.702
OGLUM04G22250
Oryza glumaepatula
OGLUM04G22250
N
0.702
OMERI04G18760
Oryza meridionalis
OMERI04G18760
N
0.702
ONIVA04G20830
Oryza nivara
ONIVA04G20830
N
0.702
ORUFI04G23880
Oryza rufipogon
ORUFI04G23880
N
0.702
OS04G0572200
Oryza sativa
OS04G0572200
N
0.702
LPERR04G18180
Leersia perrieri
LPERR04G18180
N
0.694
Eucgr.D01924
Eucalyptus grandis
Eucgr.D01924
I
0.681