Pavir.Ha00304 (Panicum virgatum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Pavir.Ha00304 T009487_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF094
M01602_2.00 		Arabidopsis thaliana
VGCCGCCD
HGGCGGCB		 PBM
Weirauch et al.(2014)
pTH8276 		0.743 0.784
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ha00304.1.p AP2 33 84

Links

Other AP2 family TFs
Other Panicum virgatum TFs

198 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Si028135m.g Setaria italica Si028135m.g I 0.850
Si028219m.g Setaria italica Si028219m.g I 0.850
Sb05g026843 Sorghum bicolor Sb05g026843 I 0.842
Pavir.Ha00307 Panicum virgatum Pavir.Ha00307 I 0.828
Pavir.J02630 Panicum virgatum Pavir.J02630 I 0.828
Pavir.Ha01200 Panicum virgatum Pavir.Ha01200 I 0.821
Si027485m.g Setaria italica Si027485m.g I 0.805
Pavir.Ha01264 Panicum virgatum Pavir.Ha01264 I 0.805
Pavir.Hb01336 Panicum virgatum Pavir.Hb01336 I 0.805
Pavir.Hb01074 Panicum virgatum Pavir.Hb01074 I 0.801
Pavir.J30299 Panicum virgatum Pavir.J30299 I 0.793
MTR_7g096830 Medicago truncatula MTR_7g096830 I 0.782
Si028088m.g Setaria italica Si028088m.g I 0.769
GRMZM2G073258 Zea mays GRMZM2G073258 I 0.768
GRMZM5G837876 Zea mays GRMZM5G837876 I 0.768
Si031946m.g Setaria italica Si031946m.g I 0.768
Pavir.Ba02781 Panicum virgatum Pavir.Ba02781 I 0.768
Pavir.J37124 Panicum virgatum Pavir.J37124 I 0.768
Pavir.J01078 Panicum virgatum Pavir.J01078 I 0.766
OB09G27130 Oryza brachyantha OB09G27130 I 0.765
OPUNC09G18690 Oryza punctata OPUNC09G18690 I 0.765
BRADI4G38930 Brachypodium distachyon BRADI4G38930 I 0.764
MLOC_43207 Hordeum vulgare MLOC_43207 I 0.764
Traes_4AS_9450AD3F4 Triticum aestivum Traes_4AS_9450AD3F4 I 0.764
TRIUR3_16508 Triticum urartu TRIUR3_16508 I 0.764
BGIOSGA031313 Oryza indica BGIOSGA031313 I 0.762
GRMZM2G123119 Zea mays GRMZM2G123119 I 0.762
LPERR09G16380 Leersia perrieri LPERR09G16380 I 0.762
OBART09G20410 Oryza barthii OBART09G20410 I 0.762
OGLUM09G21150 Oryza glumaepatula OGLUM09G21150 I 0.762
OLONG_005597 Oryza longistaminata OLONG_005597 I 0.762
ONIVA09G20840 Oryza nivara ONIVA09G20840 I 0.762
ORUFI09G22040 Oryza rufipogon ORUFI09G22040 I 0.762
OS09G0572000 Oryza sativa OS09G0572000 I 0.762
Sb02g012630 Sorghum bicolor Sb02g012630 I 0.762
Ca_12221 Cicer arietinum Ca_12221 I 0.762
Pavir.Bb00653 Panicum virgatum Pavir.Bb00653 I 0.755
Gorai.001G252600 Gossypium raimondii Gorai.001G252600 I 0.754
Pavir.Ga02734 Panicum virgatum Pavir.Ga02734 N 0.753
MTR_1g069940 Medicago truncatula MTR_1g069940 I 0.745
Traes_4DS_9C01B536B Triticum aestivum Traes_4DS_9C01B536B I 0.745
Gorai.001G176800 Gossypium raimondii Gorai.001G176800 I 0.745
ERF094 Arabidopsis thaliana AT1G06160 D 0.743
Pavir.Bb00652 Panicum virgatum Pavir.Bb00652 I 0.740
Cucsa.255340 Cucumis sativus Cucsa.255340 I 0.737
Cla021850 Citrullus lanatus Cla021850 I 0.735
Aquca_034_00376 Aquilegia coerulea Aquca_034_00376 I 0.735
GSMUA_Achr1G01380_001 Musa acuminata GSMUA_Achr1G01380_001 I 0.732
GSMUA_AchrUn_randomG10760_001 Musa acuminata GSMUA_AchrUn_randomG10760_001 I 0.732
Pavir.J17768 Panicum virgatum Pavir.J17768 I 0.732
GLYMA02G00870 Glycine max GLYMA02G00870 I 0.731
TRIUR3_29784 Triticum urartu TRIUR3_29784 I 0.730
GSMUA_Achr11G22020_001 Musa acuminata GSMUA_Achr11G22020_001 I 0.729
GSMUA_Achr5G19610_001 Musa acuminata GSMUA_Achr5G19610_001 I 0.729
VIT_07s0005g03270 Vitis vinifera VIT_07s0005g03270 I 0.729
VIT_07s0005g03230 Vitis vinifera VIT_07s0005g03230 I 0.727
VIT_07s0005g03260 Vitis vinifera VIT_07s0005g03260 I 0.727
Cla006080 Citrullus lanatus Cla006080 I 0.727
SapurV1A.0021s0980 Salix purpurea SapurV1A.0021s0980 I 0.727
TCM_004052 Theobroma cacao TCM_004052 I 0.726
Eucgr.K03266 Eucalyptus grandis Eucgr.K03266 I 0.726
cassava38509.m1 Manihot esculenta cassava38509.m1 I 0.725
cassava632.valid.m1 Manihot esculenta cassava632.valid.m1 I 0.725
Aquca_017_00711 Aquilegia coerulea Aquca_017_00711 I 0.724
chr6.CM1613.110.nc Lotus japonicus chr6.CM1613.110.nc I 0.724
POPTR_0008s16610 Populus trichocarpa POPTR_0008s16610 I 0.723
Cucsa.053560 Cucumis sativus Cucsa.053560 I 0.723
MDP0000855671 Malus domestica MDP0000855671 I 0.723
AMTR_s00009p00143340 Amborella trichopoda AMTR_s00009p00143340 I 0.722
GLYMA10G33060 Glycine max GLYMA10G33060 I 0.722
GLYMA20G34570 Glycine max GLYMA20G34570 I 0.722
MTR_1g043350 Medicago truncatula MTR_1g043350 I 0.722
PRUPE_ppa024173mg Prunus persica PRUPE_ppa024173mg I 0.722
Ca_23170 Cicer arietinum Ca_23170 I 0.722
Cla007697 Citrullus lanatus Cla007697 I 0.722
Pm009382 Prunus mume Pm009382 I 0.722
Ciclev10005820m.g Citrus clementina Ciclev10005820m.g I 0.722
Eucgr.H03088 Eucalyptus grandis Eucgr.H03088 I 0.722
evm.TU.supercontig_44.71 Carica papaya evm.TU.supercontig_44.71 I 0.722
Gorai.001G253000 Gossypium raimondii Gorai.001G253000 I 0.722
Lus10011829.g Linum usitatissimum Lus10011829.g I 0.722
Lus10021193.g Linum usitatissimum Lus10021193.g I 0.722
MDP0000127134 Malus domestica MDP0000127134 I 0.722
MDP0000167207 Malus domestica MDP0000167207 I 0.722
MDP0000235313 Malus domestica MDP0000235313 I 0.722
orange1.1g039409m.g Citrus sinensis orange1.1g039409m.g I 0.722
GLYMA10G00980 Glycine max GLYMA10G00980 I 0.721
29895.m000321 Ricinus communis 29895.m000321 I 0.720
F775_01237 Aegilops tauschii F775_01237 N 0.717
gene11442-v1.0-hybrid Fragaria vesca gene11442-v1.0-hybrid I 0.717
Gorai.013G186800 Gossypium raimondii Gorai.013G186800 I 0.717
Traes_2BS_0EE99D4A6 Triticum aestivum Traes_2BS_0EE99D4A6 I 0.716
TCM_020871 Theobroma cacao TCM_020871 I 0.715
PRUPE_ppa023839mg Prunus persica PRUPE_ppa023839mg I 0.714
Pm020604 Prunus mume Pm020604 I 0.714
gene08077-v1.0-hybrid Fragaria vesca gene08077-v1.0-hybrid I 0.714
F775_22648 Aegilops tauschii F775_22648 N 0.713
VIT_05s0049g00510 Vitis vinifera VIT_05s0049g00510 I 0.713
GSMUA_Achr4G05520_001 Musa acuminata GSMUA_Achr4G05520_001 I 0.711
GLYMA10G04170 Glycine max GLYMA10G04170 I 0.710
Cucsa.388530 Cucumis sativus Cucsa.388530 I 0.710
F775_22020 Aegilops tauschii F775_22020 I 0.708
Traes_4AL_1A0E673DC Triticum aestivum Traes_4AL_1A0E673DC I 0.708
Traes_4AL_5E86DF14B Triticum aestivum Traes_4AL_5E86DF14B I 0.708
SapurV1A.0270s0240 Salix purpurea SapurV1A.0270s0240 I 0.708
GLYMA03G31940 Glycine max GLYMA03G31940 I 0.707
GLYMA19G34696 Glycine max GLYMA19G34696 I 0.707
GSMUA_Achr3G15550_001 Musa acuminata GSMUA_Achr3G15550_001 I 0.707
SapurV1A.0132s0310 Salix purpurea SapurV1A.0132s0310 I 0.707
Gorai.004G057000 Gossypium raimondii Gorai.004G057000 I 0.705
F775_52314 Aegilops tauschii F775_52314 I 0.704
MLOC_77420 Hordeum vulgare MLOC_77420 I 0.704
Traes_4BL_39AE2989D Triticum aestivum Traes_4BL_39AE2989D I 0.704
Traes_5BL_4E044468C Triticum aestivum Traes_5BL_4E044468C I 0.704
Traes_5DL_53D8DF9CD Triticum aestivum Traes_5DL_53D8DF9CD I 0.704
Gorai.011G173000 Gossypium raimondii Gorai.011G173000 I 0.701
F775_22331 Aegilops tauschii F775_22331 I 0.700
POPTR_0019s03170 Populus trichocarpa POPTR_0019s03170 I 0.700
POPTR_0102s00200 Populus trichocarpa POPTR_0102s00200 I 0.700
Traes_4DL_CB92B5ABB Triticum aestivum Traes_4DL_CB92B5ABB I 0.700
mgf023779m Mimulus guttatus mgf023779m I 0.700
GSMUA_Achr4G12060_001 Musa acuminata GSMUA_Achr4G12060_001 I 0.699
POPTR_0011s06010 Populus trichocarpa POPTR_0011s06010 I 0.698
Gorai.010G156600 Gossypium raimondii Gorai.010G156600 I 0.696
GLYMA13G18370 Glycine max GLYMA13G18370 I 0.695
Sb02g005810 Sorghum bicolor Sb02g005810 I 0.695
Sb02g005840 Sorghum bicolor Sb02g005840 I 0.695
29680.m001678 Ricinus communis 29680.m001678 I 0.695
Lus10022015.g Linum usitatissimum Lus10022015.g I 0.695
Lus10022935.g Linum usitatissimum Lus10022935.g I 0.695
Lus10042557.g Linum usitatissimum Lus10042557.g I 0.695
GLYMA13G18350 Glycine max GLYMA13G18350 I 0.694
GLYMA13G18390 Glycine max GLYMA13G18390 I 0.694
Cla015066 Citrullus lanatus Cla015066 I 0.694
Pavir.Ba03491 Panicum virgatum Pavir.Ba03491 I 0.694
Pavir.J28684 Panicum virgatum Pavir.J28684 I 0.694
mgf020623m Mimulus guttatus mgf020623m I 0.693
GLYMA19G34670 Glycine max GLYMA19G34670 I 0.692
Si032815m.g Setaria italica Si032815m.g I 0.692
Pavir.Ib03413 Panicum virgatum Pavir.Ib03413 I 0.692
BGIOSGA024428 Oryza indica BGIOSGA024428 I 0.691
MTR_7g096780 Medicago truncatula MTR_7g096780 I 0.691
OBART07G11340 Oryza barthii OBART07G11340 I 0.691
OGLUM07G10880 Oryza glumaepatula OGLUM07G10880 I 0.691
ONIVA07G09500 Oryza nivara ONIVA07G09500 I 0.691
OPUNC07G10310 Oryza punctata OPUNC07G10310 I 0.691
ORGLA07G0097100 Oryza glaberrima ORGLA07G0097100 I 0.691
ORUFI07G11590 Oryza rufipogon ORUFI07G11590 I 0.691
OS07G0410700 Oryza sativa OS07G0410700 I 0.691
Si033089m.g Setaria italica Si033089m.g I 0.691
Ca_12219 Cicer arietinum Ca_12219 I 0.691
29900.m001561 Ricinus communis 29900.m001561 I 0.691
chr1.CM0295.160.nd Lotus japonicus chr1.CM0295.160.nd I 0.690
GRMZM2G478965 Zea mays GRMZM2G478965 I 0.689
AC233933.1_FG001 Zea mays AC233933.1_FG001 I 0.688
GRMZM2G379652 Zea mays GRMZM2G379652 I 0.688
LPERR07G06830 Leersia perrieri LPERR07G06830 I 0.687
Bostr.25219s0341 Boechera stricta Bostr.25219s0341 I 0.687
Cagra.1671s0247 Capsella grandiflora Cagra.1671s0247 I 0.687
Carubv10010105m.g Capsella rubella Carubv10010105m.g I 0.687
Thhalv10008518m.g Eutrema salsugineum Thhalv10008518m.g I 0.687
Pavir.Ba02374 Panicum virgatum Pavir.Ba02374 I 0.686
Pavir.Bb00962 Panicum virgatum Pavir.Bb00962 I 0.686
VIT_14s0081g00730 Vitis vinifera VIT_14s0081g00730 I 0.685
Gorai.001G253100 Gossypium raimondii Gorai.001G253100 I 0.685
Bo5g007280 Brassica oleracea Bo5g007280 I 0.684
Bo8g114710 Brassica oleracea Bo8g114710 I 0.684
Bra032433 Brassica rapa Bra032433 I 0.684
Si038911m.g Setaria italica Si038911m.g I 0.684
Sb05g022110 Sorghum bicolor Sb05g022110 I 0.683
MTR_4g054860 Medicago truncatula MTR_4g054860 I 0.682
GLYMA13G18340 Glycine max GLYMA13G18340 I 0.681
OPUNC03G38860 Oryza punctata OPUNC03G38860 I 0.681
mgf022372m Mimulus guttatus mgf022372m I 0.681
BGIOSGA024429 Oryza indica BGIOSGA024429 I 0.680
GLYMA10G04210 Glycine max GLYMA10G04210 I 0.680
GLYMA13G18410 Glycine max GLYMA13G18410 I 0.680
MTR_1g069945 Medicago truncatula MTR_1g069945 I 0.680
OBART07G11330 Oryza barthii OBART07G11330 I 0.680
ONIVA01G50300 Oryza nivara ONIVA01G50300 I 0.680
ORGLA07G0097000 Oryza glaberrima ORGLA07G0097000 I 0.680
ORUFI07G11580 Oryza rufipogon ORUFI07G11580 I 0.680
Ca_07754 Cicer arietinum Ca_07754 I 0.680
Lus10003562.g Linum usitatissimum Lus10003562.g I 0.680
Lus10033885.g Linum usitatissimum Lus10033885.g I 0.680
LjSGA_017232.1 Lotus japonicus LjSGA_017232.1 I 0.680
F775_25471 Aegilops tauschii F775_25471 I 0.679
MLOC_80197 Hordeum vulgare MLOC_80197 I 0.679
Traes_2BL_0B09B840B Triticum aestivum Traes_2BL_0B09B840B I 0.679
Pavir.Ia00066 Panicum virgatum Pavir.Ia00066 I 0.679
OGLUM07G10870 Oryza glumaepatula OGLUM07G10870 I 0.678
POPTR_0013s04240 Populus trichocarpa POPTR_0013s04240 I 0.678
mgf021081m Mimulus guttatus mgf021081m I 0.678
evm.TU.supercontig_162.25 Carica papaya evm.TU.supercontig_162.25 I 0.678
BRADI1G00670 Brachypodium distachyon BRADI1G00670 I 0.677
mgf018693m Mimulus guttatus mgf018693m I 0.677
Ciclev10024142m.g Citrus clementina Ciclev10024142m.g I 0.677
orange1.1g047387m.g Citrus sinensis orange1.1g047387m.g I 0.677