CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.J00593
(
Panicum virgatum
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
IPR001471
Pavir.J00593
T009538_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ERF017
M06568_2.00
Arabidopsis thaliana
NHNYCRCCGWCMWH
DWKGWCGGYGRNDN
Dap-seq
OMalley et al.(2016)
At1g19210_col_a
0.770
0.880
ERF017
M06569_2.00
Arabidopsis thaliana
NNNHNNCRCCGWCMW
WKGWCGGYGNNDNNN
Dap-seq
OMalley et al.(2016)
At1g19210_colamp_a
0.770
0.880
ERF018
M00842_2.00
Arabidopsis thaliana
HRCCGDCMN
NKGHCGGYD
PBM
Franco-Zorrilla et al.(2014)
ORA47
0.769
0.860
ERF018
M01610_2.00
Arabidopsis thaliana
NRCCGNCHN
NDGNCGGYN
PBM
Weirauch et al.(2014)
pTH7215
0.769
0.860
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.J00593.1.p
AP2
14
65
KKFKGVRKRKWGKWVSEIRLPNSRERIWLGSYDAPEKAARAFDAAFVCLRGA
Links
Other
AP2
family TFs
Other
Panicum virgatum
TFs
155 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Si019636m.g
Setaria italica
Si019636m.g
I
0.810
Pavir.Aa00296
Panicum virgatum
Pavir.Aa00296
I
0.810
GRMZM2G097081
Zea mays
GRMZM2G097081
I
0.803
Traes_6DL_FA861D610
Triticum aestivum
Traes_6DL_FA861D610
I
0.788
MDP0000649022
Malus domestica
MDP0000649022
I
0.784
Bo8g068370
Brassica oleracea
Bo8g068370
I
0.777
Bra016518
Brassica rapa
Bra016518
I
0.777
POPTR_0006s14100
Populus trichocarpa
POPTR_0006s14100
I
0.775
TCM_037415
Theobroma cacao
TCM_037415
I
0.775
cassava25057.valid.m1
Manihot esculenta
cassava25057.valid.m1
I
0.775
PRUPE_ppa011336mg
Prunus persica
PRUPE_ppa011336mg
I
0.774
Pm027117
Prunus mume
Pm027117
I
0.774
29739.m003716
Ricinus communis
29739.m003716
I
0.774
Lus10009798.g
Linum usitatissimum
Lus10009798.g
I
0.774
Lus10038082.g
Linum usitatissimum
Lus10038082.g
I
0.774
Bo8g102870
Brassica oleracea
Bo8g102870
I
0.773
Bra031069
Brassica rapa
Bra031069
I
0.773
POPTR_0006s23480
Populus trichocarpa
POPTR_0006s23480
I
0.773
SapurV1A.0373s0040
Salix purpurea
SapurV1A.0373s0040
I
0.773
SapurV1A.2229s0010
Salix purpurea
SapurV1A.2229s0010
I
0.773
Thhalv10009812m.g
Eutrema salsugineum
Thhalv10009812m.g
I
0.772
mgf024162m
Mimulus guttatus
mgf024162m
I
0.771
Eucgr.C00780
Eucalyptus grandis
Eucgr.C00780
I
0.771
gene12919-v1.0-hybrid
Fragaria vesca
gene12919-v1.0-hybrid
I
0.771
SapurV1A.0057s0300
Salix purpurea
SapurV1A.0057s0300
I
0.771
ERF017
Arabidopsis thaliana
AT1G19210
D
0.770
fgenesh2_kg.1__2098__AT1G19210.1
Arabidopsis lyrata
fgenesh2_kg.1__2098__AT1G19210.1
I
0.770
ORA47
Vitis vinifera
VIT_04s0008g02230
I
0.770
Cagra.1961s0079
Capsella grandiflora
Cagra.1961s0079
I
0.770
Carubv10011394m.g
Capsella rubella
Carubv10011394m.g
I
0.770
evm.TU.supercontig_266.5
Carica papaya
evm.TU.supercontig_266.5
I
0.770
Gorai.001G019100
Gossypium raimondii
Gorai.001G019100
I
0.770
ERF018
Arabidopsis thaliana
AT1G74930
D
0.769
ORA47
Arabidopsis lyrata
fgenesh2_kg.2__1761__AT1G74930.1
I
0.769
Bostr.3288s0141
Boechera stricta
Bostr.3288s0141
I
0.769
cassava10604.m1
Manihot esculenta
cassava10604.m1
I
0.768
Lus10033420.g
Linum usitatissimum
Lus10033420.g
I
0.768
Lus10034885.g
Linum usitatissimum
Lus10034885.g
I
0.768
Bo6g119120
Brassica oleracea
Bo6g119120
I
0.767
POPTR_0006s14090
Populus trichocarpa
POPTR_0006s14090
I
0.767
SapurV1A.0521s0050
Salix purpurea
SapurV1A.0521s0050
I
0.766
mgf021940m
Mimulus guttatus
mgf021940m
I
0.765
Gorai.010G091100
Gossypium raimondii
Gorai.010G091100
I
0.765
LPERR02G28660
Leersia perrieri
LPERR02G28660
I
0.764
TCM_037486
Theobroma cacao
TCM_037486
I
0.762
Aquca_076_00039
Aquilegia coerulea
Aquca_076_00039
I
0.762
Gorai.004G285900
Gossypium raimondii
Gorai.004G285900
I
0.762
Bo6g086740
Brassica oleracea
Bo6g086740
I
0.761
Cagra.0402s0035
Capsella grandiflora
Cagra.0402s0035
I
0.761
Carubv10020965m.g
Capsella rubella
Carubv10020965m.g
I
0.761
VIT_11s0016g00660
Vitis vinifera
VIT_11s0016g00660
I
0.760
cassava20547.m1
Manihot esculenta
cassava20547.m1
I
0.760
Eucgr.C03297
Eucalyptus grandis
Eucgr.C03297
I
0.760
Bra003780
Brassica rapa
Bra003780
I
0.759
Bra015882
Brassica rapa
Bra015882
I
0.759
29739.m003647
Ricinus communis
29739.m003647
I
0.759
Ciclev10010348m.g
Citrus clementina
Ciclev10010348m.g
I
0.758
MDP0000704216
Malus domestica
MDP0000704216
I
0.758
POPTR_0018s08320
Populus trichocarpa
POPTR_0018s08320
I
0.757
Cla007584
Citrullus lanatus
Cla007584
I
0.757
GLYMA04G06095
Glycine max
GLYMA04G06095
I
0.755
GLYMA06G06101
Glycine max
GLYMA06G06101
I
0.755
MTR_1g014800
Medicago truncatula
MTR_1g014800
I
0.754
Ca_01683
Cicer arietinum
Ca_01683
I
0.753
Ca_09124
Cicer arietinum
Ca_09124
I
0.751
chr5.CM0040.40.nd
Lotus japonicus
chr5.CM0040.40.nd
I
0.751
mgf025452m
Mimulus guttatus
mgf025452m
I
0.750
Thhalv10019652m.g
Eutrema salsugineum
Thhalv10019652m.g
I
0.750
Gorai.001G016800
Gossypium raimondii
Gorai.001G016800
I
0.749
Ciclev10009540m.g
Citrus clementina
Ciclev10009540m.g
I
0.748
orange1.1g029068m.g
Citrus sinensis
orange1.1g029068m.g
I
0.748
AMTR_s00007p00268280
Amborella trichopoda
AMTR_s00007p00268280
I
0.747
GSMUA_Achr5G05160_001
Musa acuminata
GSMUA_Achr5G05160_001
I
0.747
BGIOSGA005486
Oryza indica
BGIOSGA005486
I
0.746
MTR_1g014820
Medicago truncatula
MTR_1g014820
I
0.746
MTR_1g014860
Medicago truncatula
MTR_1g014860
I
0.746
OGLUM02G35980
Oryza glumaepatula
OGLUM02G35980
I
0.746
OMERI01G37050
Oryza meridionalis
OMERI01G37050
I
0.746
ONIVA02G36910
Oryza nivara
ONIVA02G36910
I
0.746
OPUNC02G32160
Oryza punctata
OPUNC02G32160
I
0.746
ORGLA02G0301600
Oryza glaberrima
ORGLA02G0301600
I
0.746
ORUFI02G36340
Oryza rufipogon
ORUFI02G36340
I
0.746
OS02G0781300
Oryza sativa
OS02G0781300
I
0.746
Bostr.7128s0526
Boechera stricta
Bostr.7128s0526
I
0.746
GLYMA09G08330
Glycine max
GLYMA09G08330
I
0.745
GLYMA17G05240
Glycine max
GLYMA17G05240
I
0.745
Cla011318
Citrullus lanatus
Cla011318
I
0.744
Cucsa.141980
Cucumis sativus
Cucsa.141980
I
0.744
GLYMA13G17250
Glycine max
GLYMA13G17250
I
0.743
GLYMA15G19910
Glycine max
GLYMA15G19910
I
0.742
MTR_2g043050
Medicago truncatula
MTR_2g043050
I
0.739
GLYMA17G33535
Glycine max
GLYMA17G33535
I
0.738
Bra025719
Brassica rapa
Bra025719
I
0.737
PGSC0003DMG400002899
Solanum tuberosum
PGSC0003DMG400002899
I
0.737
Solyc12g009240.1
Solanum lycopersicum
Solyc12g009240.1
I
0.737
Cucsa.271180
Cucumis sativus
Cucsa.271180
I
0.736
Gorai.013G222700
Gossypium raimondii
Gorai.013G222700
I
0.736
Traes_6AL_E6DAE246D
Triticum aestivum
Traes_6AL_E6DAE246D
I
0.734
Bo3g015600
Brassica oleracea
Bo3g015600
I
0.731
Bra006599
Brassica rapa
Bra006599
I
0.731
GLYMA14G12505
Glycine max
GLYMA14G12505
I
0.731
Si008104m.g
Setaria italica
Si008104m.g
I
0.731
GSMUA_AchrUn_randomG02200_001
Musa acuminata
GSMUA_AchrUn_randomG02200_001
I
0.730
PK18548.1
Cannabis sativa
PK18548.1
I
0.730
Bo9g149820
Brassica oleracea
Bo9g149820
I
0.729
Bra002377
Brassica rapa
Bra002377
I
0.729
scaffold_602234.1
Arabidopsis lyrata
scaffold_602234.1
I
0.729
Bostr.26527s0082
Boechera stricta
Bostr.26527s0082
I
0.729
Carubv10001903m.g
Capsella rubella
Carubv10001903m.g
I
0.729
Bo2g023630
Brassica oleracea
Bo2g023630
I
0.727
Ca_19295
Cicer arietinum
Ca_19295
I
0.727
Bra020162
Brassica rapa
Bra020162
I
0.725
MTR_2g043030
Medicago truncatula
MTR_2g043030
I
0.725
MTR_2g043040
Medicago truncatula
MTR_2g043040
I
0.725
Ca_19297
Cicer arietinum
Ca_19297
I
0.725
Thhalv10015465m.g
Eutrema salsugineum
Thhalv10015465m.g
I
0.724
ERF016
Arabidopsis thaliana
AT5G21960
I
0.723
MTR_3g105480
Medicago truncatula
MTR_3g105480
I
0.722
MTR_3g105510
Medicago truncatula
MTR_3g105510
I
0.722
Ca_19296
Cicer arietinum
Ca_19296
I
0.722
chr1.CM0133.1010.nc
Lotus japonicus
chr1.CM0133.1010.nc
I
0.721
PGSC0003DMG400030781
Solanum tuberosum
PGSC0003DMG400030781
I
0.715
Solyc06g054630.1
Solanum lycopersicum
Solyc06g054630.1
I
0.715
Eucgr.C03175
Eucalyptus grandis
Eucgr.C03175
I
0.715
Cla022291
Citrullus lanatus
Cla022291
I
0.711
Cucsa.055920
Cucumis sativus
Cucsa.055920
I
0.711
GSMUA_Achr9G14360_001
Musa acuminata
GSMUA_Achr9G14360_001
I
0.709
BGIOSGA028781
Oryza indica
BGIOSGA028781
I
0.707
GRMZM2G163745
Zea mays
GRMZM2G163745
I
0.707
LPERR08G14000
Leersia perrieri
LPERR08G14000
I
0.707
OB08G24280
Oryza brachyantha
OB08G24280
I
0.707
OBART08G16950
Oryza barthii
OBART08G16950
I
0.707
OGLUM08G17690
Oryza glumaepatula
OGLUM08G17690
I
0.707
ONIVA08G18470
Oryza nivara
ONIVA08G18470
I
0.707
OPUNC08G14840
Oryza punctata
OPUNC08G14840
I
0.707
ORUFI08G18850
Oryza rufipogon
ORUFI08G18850
I
0.707
OS08G0454000
Oryza sativa
OS08G0454000
I
0.707
Si015027m.g
Setaria italica
Si015027m.g
I
0.707
Pavir.Fa00741
Panicum virgatum
Pavir.Fa00741
I
0.707
Pavir.Fb01602
Panicum virgatum
Pavir.Fb01602
I
0.707
chr6.CM0420.30.nd
Lotus japonicus
chr6.CM0420.30.nd
I
0.707
TRAES3BF084200010CFD_g
Triticum aestivum
TRAES3BF084200010CFD_g
I
0.700
BRADI3G37544
Brachypodium distachyon
BRADI3G37544
I
0.698
F775_23111
Aegilops tauschii
F775_23111
I
0.698
Gorai.004G285200
Gossypium raimondii
Gorai.004G285200
I
0.696
MTR_2g043020
Medicago truncatula
MTR_2g043020
I
0.693
OBART06G06190
Oryza barthii
OBART06G06190
I
0.693
OGLUM06G06520
Oryza glumaepatula
OGLUM06G06520
I
0.693
OMERI03G32210
Oryza meridionalis
OMERI03G32210
I
0.693
ONIVA06G07190
Oryza nivara
ONIVA06G07190
I
0.693
ORGLA06G0057200
Oryza glaberrima
ORGLA06G0057200
I
0.693
Sb07g022265
Sorghum bicolor
Sb07g022265
I
0.693
BGIOSGA022471
Oryza indica
BGIOSGA022471
I
0.692
ORUFI06G06480
Oryza rufipogon
ORUFI06G06480
I
0.692
MTR_1g014780
Medicago truncatula
MTR_1g014780
I
0.680