Pavir.J01078 (Panicum virgatum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Pavir.J01078 T009539_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF094
M01602_2.00 		Arabidopsis thaliana
VGCCGCCD
HGGCGGCB		 PBM
Weirauch et al.(2014)
pTH8276 		0.747 0.712
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J01078.1.p AP2 153 205

Links

Other AP2 family TFs
Other Panicum virgatum TFs

214 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pavir.Ha01264 Panicum virgatum Pavir.Ha01264 I 0.824
Pavir.Hb01336 Panicum virgatum Pavir.Hb01336 I 0.824
Si027485m.g Setaria italica Si027485m.g I 0.821
Pavir.Hb01074 Panicum virgatum Pavir.Hb01074 I 0.820
Pavir.J30299 Panicum virgatum Pavir.J30299 I 0.812
Pavir.Ha01200 Panicum virgatum Pavir.Ha01200 I 0.808
Si028088m.g Setaria italica Si028088m.g I 0.785
GRMZM2G073258 Zea mays GRMZM2G073258 I 0.784
GRMZM5G837876 Zea mays GRMZM5G837876 I 0.784
Si031946m.g Setaria italica Si031946m.g I 0.771
Pavir.Ba02781 Panicum virgatum Pavir.Ba02781 I 0.771
Pavir.J37124 Panicum virgatum Pavir.J37124 I 0.771
OB09G27130 Oryza brachyantha OB09G27130 I 0.769
OPUNC09G18690 Oryza punctata OPUNC09G18690 I 0.769
BRADI4G38930 Brachypodium distachyon BRADI4G38930 I 0.767
MLOC_43207 Hordeum vulgare MLOC_43207 I 0.767
Traes_4AS_9450AD3F4 Triticum aestivum Traes_4AS_9450AD3F4 I 0.767
TRIUR3_16508 Triticum urartu TRIUR3_16508 I 0.767
BGIOSGA031313 Oryza indica BGIOSGA031313 I 0.766
LPERR09G16380 Leersia perrieri LPERR09G16380 I 0.766
OBART09G20410 Oryza barthii OBART09G20410 I 0.766
OGLUM09G21150 Oryza glumaepatula OGLUM09G21150 I 0.766
OLONG_005597 Oryza longistaminata OLONG_005597 I 0.766
ONIVA09G20840 Oryza nivara ONIVA09G20840 I 0.766
ORUFI09G22040 Oryza rufipogon ORUFI09G22040 I 0.766
OS09G0572000 Oryza sativa OS09G0572000 I 0.766
Sb02g012630 Sorghum bicolor Sb02g012630 I 0.766
Si028135m.g Setaria italica Si028135m.g I 0.766
Si028219m.g Setaria italica Si028219m.g I 0.766
Pavir.Ha00304 Panicum virgatum Pavir.Ha00304 I 0.766
GRMZM2G123119 Zea mays GRMZM2G123119 I 0.765
Pavir.Bb00653 Panicum virgatum Pavir.Bb00653 I 0.761
Pavir.Ha00307 Panicum virgatum Pavir.Ha00307 I 0.759
Pavir.J02630 Panicum virgatum Pavir.J02630 I 0.759
Sb05g026843 Sorghum bicolor Sb05g026843 I 0.758
Gorai.001G252600 Gossypium raimondii Gorai.001G252600 I 0.757
GSMUA_AchrUn_randomG10760_001 Musa acuminata GSMUA_AchrUn_randomG10760_001 I 0.753
Pavir.J17768 Panicum virgatum Pavir.J17768 I 0.751
Traes_4DS_9C01B536B Triticum aestivum Traes_4DS_9C01B536B I 0.749
ERF094 Arabidopsis thaliana AT1G06160 D 0.747
Pavir.Bb00652 Panicum virgatum Pavir.Bb00652 I 0.747
Ca_12221 Cicer arietinum Ca_12221 I 0.734
GSMUA_Achr11G22020_001 Musa acuminata GSMUA_Achr11G22020_001 I 0.733
GSMUA_Achr5G19610_001 Musa acuminata GSMUA_Achr5G19610_001 I 0.733
Gorai.001G176800 Gossypium raimondii Gorai.001G176800 I 0.732
VIT_07s0005g03230 Vitis vinifera VIT_07s0005g03230 I 0.731
VIT_07s0005g03260 Vitis vinifera VIT_07s0005g03260 I 0.731
Eucgr.K03266 Eucalyptus grandis Eucgr.K03266 I 0.730
GLYMA10G04170 Glycine max GLYMA10G04170 I 0.727
F775_22020 Aegilops tauschii F775_22020 I 0.726
Traes_4AL_1A0E673DC Triticum aestivum Traes_4AL_1A0E673DC I 0.726
Traes_4AL_5E86DF14B Triticum aestivum Traes_4AL_5E86DF14B I 0.726
Gorai.001G253000 Gossypium raimondii Gorai.001G253000 I 0.726
MTR_7g096830 Medicago truncatula MTR_7g096830 I 0.725
Cucsa.255340 Cucumis sativus Cucsa.255340 I 0.725
Eucgr.H03088 Eucalyptus grandis Eucgr.H03088 I 0.725
Aquca_034_00376 Aquilegia coerulea Aquca_034_00376 I 0.724
Cla021850 Citrullus lanatus Cla021850 I 0.723
F775_52314 Aegilops tauschii F775_52314 I 0.722
MLOC_77420 Hordeum vulgare MLOC_77420 I 0.722
Traes_4BL_39AE2989D Triticum aestivum Traes_4BL_39AE2989D I 0.722
Traes_5BL_4E044468C Triticum aestivum Traes_5BL_4E044468C I 0.722
Traes_5DL_53D8DF9CD Triticum aestivum Traes_5DL_53D8DF9CD I 0.722
GSMUA_Achr1G01380_001 Musa acuminata GSMUA_Achr1G01380_001 I 0.721
TRIUR3_29784 Triticum urartu TRIUR3_29784 I 0.721
Gorai.013G186800 Gossypium raimondii Gorai.013G186800 I 0.720
F775_22331 Aegilops tauschii F775_22331 I 0.719
Traes_4DL_CB92B5ABB Triticum aestivum Traes_4DL_CB92B5ABB I 0.719
MTR_1g069940 Medicago truncatula MTR_1g069940 I 0.718
VIT_07s0005g03270 Vitis vinifera VIT_07s0005g03270 I 0.718
Cla006080 Citrullus lanatus Cla006080 I 0.716
Lus10022935.g Linum usitatissimum Lus10022935.g I 0.716
SapurV1A.0021s0980 Salix purpurea SapurV1A.0021s0980 I 0.716
TCM_004052 Theobroma cacao TCM_004052 I 0.714
cassava38509.m1 Manihot esculenta cassava38509.m1 I 0.714
cassava632.valid.m1 Manihot esculenta cassava632.valid.m1 I 0.714
GLYMA13G18370 Glycine max GLYMA13G18370 I 0.713
GSMUA_Achr3G15550_001 Musa acuminata GSMUA_Achr3G15550_001 I 0.713
Sb02g005810 Sorghum bicolor Sb02g005810 I 0.713
Sb02g005840 Sorghum bicolor Sb02g005840 I 0.713
29680.m001678 Ricinus communis 29680.m001678 I 0.713
Aquca_017_00711 Aquilegia coerulea Aquca_017_00711 I 0.713
Lus10022015.g Linum usitatissimum Lus10022015.g I 0.713
Lus10042557.g Linum usitatissimum Lus10042557.g I 0.713
Pavir.Ba03491 Panicum virgatum Pavir.Ba03491 I 0.713
Pavir.Ib03413 Panicum virgatum Pavir.Ib03413 I 0.713
Pavir.J28684 Panicum virgatum Pavir.J28684 I 0.713
chr6.CM1613.110.nc Lotus japonicus chr6.CM1613.110.nc I 0.713
GLYMA13G18350 Glycine max GLYMA13G18350 I 0.712
GLYMA13G18390 Glycine max GLYMA13G18390 I 0.712
POPTR_0008s16610 Populus trichocarpa POPTR_0008s16610 I 0.712
Cucsa.053560 Cucumis sativus Cucsa.053560 I 0.712
MDP0000855671 Malus domestica MDP0000855671 I 0.712
AMTR_s00009p00143340 Amborella trichopoda AMTR_s00009p00143340 I 0.711
BGIOSGA024429 Oryza indica BGIOSGA024429 I 0.711
GLYMA10G33060 Glycine max GLYMA10G33060 I 0.711
GLYMA20G34570 Glycine max GLYMA20G34570 I 0.711
MTR_1g043350 Medicago truncatula MTR_1g043350 I 0.711
OBART07G11330 Oryza barthii OBART07G11330 I 0.711
ONIVA01G50300 Oryza nivara ONIVA01G50300 I 0.711
ORGLA07G0097000 Oryza glaberrima ORGLA07G0097000 I 0.711
ORUFI07G11580 Oryza rufipogon ORUFI07G11580 I 0.711
PRUPE_ppa024173mg Prunus persica PRUPE_ppa024173mg I 0.711
Ca_23170 Cicer arietinum Ca_23170 I 0.711
Cla007697 Citrullus lanatus Cla007697 I 0.711
Pm009382 Prunus mume Pm009382 I 0.711
Ciclev10005820m.g Citrus clementina Ciclev10005820m.g I 0.711
evm.TU.supercontig_44.71 Carica papaya evm.TU.supercontig_44.71 I 0.711
Lus10011829.g Linum usitatissimum Lus10011829.g I 0.711
Lus10021193.g Linum usitatissimum Lus10021193.g I 0.711
MDP0000127134 Malus domestica MDP0000127134 I 0.711
MDP0000167207 Malus domestica MDP0000167207 I 0.711
MDP0000235313 Malus domestica MDP0000235313 I 0.711
orange1.1g039409m.g Citrus sinensis orange1.1g039409m.g I 0.711
SapurV1A.0132s0310 Salix purpurea SapurV1A.0132s0310 I 0.711
GLYMA10G00980 Glycine max GLYMA10G00980 I 0.710
Si033089m.g Setaria italica Si033089m.g I 0.710
GLYMA03G31940 Glycine max GLYMA03G31940 I 0.709
GLYMA19G34696 Glycine max GLYMA19G34696 I 0.709
OGLUM07G10870 Oryza glumaepatula OGLUM07G10870 I 0.709
29895.m000321 Ricinus communis 29895.m000321 I 0.709
BGIOSGA024428 Oryza indica BGIOSGA024428 I 0.708
OBART07G11340 Oryza barthii OBART07G11340 I 0.708
OGLUM07G10880 Oryza glumaepatula OGLUM07G10880 I 0.708
ONIVA07G09500 Oryza nivara ONIVA07G09500 I 0.708
OPUNC07G10310 Oryza punctata OPUNC07G10310 I 0.708
ORGLA07G0097100 Oryza glaberrima ORGLA07G0097100 I 0.708
ORUFI07G11590 Oryza rufipogon ORUFI07G11590 I 0.708
OS07G0410700 Oryza sativa OS07G0410700 I 0.708
Gorai.004G057000 Gossypium raimondii Gorai.004G057000 I 0.707
Thhalv10008518m.g Eutrema salsugineum Thhalv10008518m.g I 0.707
gene11442-v1.0-hybrid Fragaria vesca gene11442-v1.0-hybrid I 0.706
AC233933.1_FG001 Zea mays AC233933.1_FG001 I 0.705
LPERR07G06830 Leersia perrieri LPERR07G06830 I 0.704
POPTR_0011s06010 Populus trichocarpa POPTR_0011s06010 I 0.704
TCM_020871 Theobroma cacao TCM_020871 I 0.704
PRUPE_ppa023839mg Prunus persica PRUPE_ppa023839mg I 0.703
VIT_14s0081g00730 Vitis vinifera VIT_14s0081g00730 I 0.703
Pm020604 Prunus mume Pm020604 I 0.703
gene08077-v1.0-hybrid Fragaria vesca gene08077-v1.0-hybrid I 0.703
Gorai.001G253100 Gossypium raimondii Gorai.001G253100 I 0.703
Pavir.Ba02374 Panicum virgatum Pavir.Ba02374 I 0.703
Pavir.Bb00962 Panicum virgatum Pavir.Bb00962 I 0.703
GSMUA_Achr4G12060_001 Musa acuminata GSMUA_Achr4G12060_001 I 0.702
Si038911m.g Setaria italica Si038911m.g I 0.702
VIT_05s0049g00510 Vitis vinifera VIT_05s0049g00510 I 0.702
mgf023779m Mimulus guttatus mgf023779m I 0.701
GSMUA_Achr4G05520_001 Musa acuminata GSMUA_Achr4G05520_001 I 0.700
GLYMA02G00870 Glycine max GLYMA02G00870 I 0.699
GLYMA13G18340 Glycine max GLYMA13G18340 I 0.699
OPUNC03G38860 Oryza punctata OPUNC03G38860 I 0.699
Si032815m.g Setaria italica Si032815m.g I 0.699
Cucsa.388530 Cucumis sativus Cucsa.388530 I 0.699
F775_25471 Aegilops tauschii F775_25471 I 0.697
MLOC_80197 Hordeum vulgare MLOC_80197 I 0.697
Traes_2BL_0B09B840B Triticum aestivum Traes_2BL_0B09B840B I 0.697
29900.m001561 Ricinus communis 29900.m001561 I 0.697
Pavir.Ia00066 Panicum virgatum Pavir.Ia00066 I 0.697
SapurV1A.0270s0240 Salix purpurea SapurV1A.0270s0240 I 0.697
mgf020623m Mimulus guttatus mgf020623m I 0.696
BRADI1G00670 Brachypodium distachyon BRADI1G00670 I 0.695
Bra015478 Brassica rapa Bra015478 I 0.694
F775_22648 Aegilops tauschii F775_22648 N 0.694
GRMZM2G478965 Zea mays GRMZM2G478965 I 0.694
Traes_2BS_0EE99D4A6 Triticum aestivum Traes_2BS_0EE99D4A6 I 0.694
29584.m000234 Ricinus communis 29584.m000234 I 0.694
cassava37347.valid.m1 Manihot esculenta cassava37347.valid.m1 I 0.694
cassava38166.valid.m1 Manihot esculenta cassava38166.valid.m1 I 0.694
Gorai.007G145800 Gossypium raimondii Gorai.007G145800 I 0.694
GRMZM2G379652 Zea mays GRMZM2G379652 I 0.693
TCM_004056 Theobroma cacao TCM_004056 I 0.693
F775_01237 Aegilops tauschii F775_01237 N 0.692
Pavir.Hb01232 Panicum virgatum Pavir.Hb01232 N 0.691
Bostr.25219s0341 Boechera stricta Bostr.25219s0341 I 0.690
Cagra.1671s0247 Capsella grandiflora Cagra.1671s0247 I 0.690
Carubv10010105m.g Capsella rubella Carubv10010105m.g I 0.690
Gorai.011G173000 Gossypium raimondii Gorai.011G173000 I 0.690
POPTR_0019s03170 Populus trichocarpa POPTR_0019s03170 I 0.689
POPTR_0102s00200 Populus trichocarpa POPTR_0102s00200 I 0.689
Pavir.J16149 Panicum virgatum Pavir.J16149 I 0.689
Sb05g022110 Sorghum bicolor Sb05g022110 I 0.688
SapurV1A.0233s0360 Salix purpurea SapurV1A.0233s0360 I 0.688
SapurV1A.4312s0010 Salix purpurea SapurV1A.4312s0010 I 0.688
Bo5g007280 Brassica oleracea Bo5g007280 I 0.687
Bo8g114710 Brassica oleracea Bo8g114710 I 0.687
Sb01g000352 Sorghum bicolor Sb01g000352 I 0.686
Gorai.010G156600 Gossypium raimondii Gorai.010G156600 I 0.685
MTR_4g054860 Medicago truncatula MTR_4g054860 I 0.684
Cla015066 Citrullus lanatus Cla015066 I 0.683
POPTR_0013s04240 Populus trichocarpa POPTR_0013s04240 I 0.682
TCM_026234 Theobroma cacao TCM_026234 I 0.682
evm.TU.supercontig_162.25 Carica papaya evm.TU.supercontig_162.25 I 0.682
GLYMA19G34670 Glycine max GLYMA19G34670 I 0.681
GRMZM2G381441 Zea mays GRMZM2G381441 I 0.681
mgf021081m Mimulus guttatus mgf021081m I 0.681
Gorai.013G186700 Gossypium raimondii Gorai.013G186700 I 0.681
mgf018693m Mimulus guttatus mgf018693m I 0.680
Ciclev10024142m.g Citrus clementina Ciclev10024142m.g I 0.680
orange1.1g047387m.g Citrus sinensis orange1.1g047387m.g I 0.680
BGIOSGA011868 Oryza indica BGIOSGA011868 I 0.679
LPERR03G03540 Leersia perrieri LPERR03G03540 I 0.679
OBART03G03890 Oryza barthii OBART03G03890 I 0.679
OGLUM03G03790 Oryza glumaepatula OGLUM03G03790 I 0.679
OLONG_008277 Oryza longistaminata OLONG_008277 I 0.679
ONIVA03G03670 Oryza nivara ONIVA03G03670 I 0.679
ORGLA03G0036700 Oryza glaberrima ORGLA03G0036700 I 0.679
ORUFI03G03630 Oryza rufipogon ORUFI03G03630 I 0.679
OS03G0150200 Oryza sativa OS03G0150200 I 0.679
MDP0000322279 Malus domestica MDP0000322279 I 0.679
MTR_1g070000 Medicago truncatula MTR_1g070000 I 0.678
MTR_1g070015 Medicago truncatula MTR_1g070015 I 0.678
MTR_1g070020 Medicago truncatula MTR_1g070020 I 0.678
MTR_1g070045 Medicago truncatula MTR_1g070045 I 0.678
Gorai.005G049300 Gossypium raimondii Gorai.005G049300 I 0.677