Pavir.J27340 (Panicum virgatum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Pavir.J27340 T009617_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
P93632_MAIZE
M09712_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GL15_01 		0.859 0.980
Q9XHD4_PETHY
M09737_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AP2A_01 		0.831 0.888
Q9XHD3_PETHY
M09736_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AP2B_01 		0.807 0.837
RAP2.7
M00845_2.00 		Arabidopsis thaliana
KRCGRGGD
HCCYCGYM		 PBM
Franco-Zorrilla et al.(2014)
TOE1 		0.800 0.837
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J27340.1.p AP2 43 92
Pavir.J27340.1.p AP2 135 186
Pavir.J27340.2.p AP2 43 92
Pavir.J27340.2.p AP2 135 186

Links

Other AP2 family TFs
Other Panicum virgatum TFs

239 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GRMZM2G160730 Zea mays GRMZM2G160730 I 0.859
P93632_MAIZE Zea mays P93632_MAIZE D 0.859
Sb10g025053 Sorghum bicolor Sb10g025053 I 0.859
Pavir.Da00466 Panicum virgatum Pavir.Da00466 I 0.857
BGIOSGA020813 Oryza indica BGIOSGA020813 I 0.837
OB06G29960 Oryza brachyantha OB06G29960 I 0.837
OGLUM06G23380 Oryza glumaepatula OGLUM06G23380 I 0.837
OMERI06G22190 Oryza meridionalis OMERI06G22190 I 0.837
ONIVA06G26190 Oryza nivara ONIVA06G26190 I 0.837
ORUFI06G23930 Oryza rufipogon ORUFI06G23930 I 0.837
OPUNC06G19990 Oryza punctata OPUNC06G19990 I 0.836
LPERR06G18460 Leersia perrieri LPERR06G18460 I 0.834
AP2 Arabidopsis thaliana AT4G36920 I 0.831
Bo1g004960 Brassica oleracea Bo1g004960 I 0.831
Bo7g118400 Brassica oleracea Bo7g118400 I 0.831
Bra011741 Brassica rapa Bra011741 I 0.831
Bra017809 Brassica rapa Bra017809 I 0.831
AP2 Arabidopsis lyrata fgenesh2_kg.7__332__AT4G36920.1 I 0.831
GLYMA01G39520 Glycine max GLYMA01G39520 I 0.831
GLYMA05G18041 Glycine max GLYMA05G18041 I 0.831
GLYMA17G18640 Glycine max GLYMA17G18640 I 0.831
GSMUA_Achr1G09830_001 Musa acuminata GSMUA_Achr1G09830_001 I 0.831
GSMUA_Achr1G26080_001 Musa acuminata GSMUA_Achr1G26080_001 I 0.831
GSMUA_Achr3G13180_001 Musa acuminata GSMUA_Achr3G13180_001 I 0.831
MTR_4g094868 Medicago truncatula MTR_4g094868 I 0.831
MTR_5g016810 Medicago truncatula MTR_5g016810 I 0.831
PGSC0003DMG400004006 Solanum tuberosum PGSC0003DMG400004006 I 0.831
POPTR_0007s10780 Populus trichocarpa POPTR_0007s10780 I 0.831
Solyc02g093150.2 Solanum lycopersicum Solyc02g093150.2 I 0.831
Solyc03g044300.2 Solanum lycopersicum Solyc03g044300.2 I 0.831
TOE3 Vitis vinifera VIT_07s0031g00220 I 0.831
Ca_09295 Cicer arietinum Ca_09295 I 0.831
Cla000716 Citrullus lanatus Cla000716 I 0.831
Q9XHD4_PETHY Petunia x hybrida Q9XHD4_PETHY D 0.831
Cucsa.102550 Cucumis sativus Cucsa.102550 I 0.831
Bostr.7867s1579 Boechera stricta Bostr.7867s1579 I 0.831
Cagra.4909s0048 Capsella grandiflora Cagra.4909s0048 I 0.831
Carubv10004818m.g Capsella rubella Carubv10004818m.g I 0.831
evm.TU.supercontig_55.116 Carica papaya evm.TU.supercontig_55.116 I 0.831
Gorai.003G025900 Gossypium raimondii Gorai.003G025900 I 0.831
SapurV1A.0689s0070 Salix purpurea SapurV1A.0689s0070 I 0.831
PK02403.1 Cannabis sativa PK02403.1 I 0.831
GSMUA_AchrUn_randomG16200_001 Musa acuminata GSMUA_AchrUn_randomG16200_001 I 0.830
PGSC0003DMG400006482 Solanum tuberosum PGSC0003DMG400006482 I 0.830
29805.m001494 Ricinus communis 29805.m001494 I 0.830
mgf009315m Mimulus guttatus mgf009315m I 0.830
chr1.CM0033.300.nc Lotus japonicus chr1.CM0033.300.nc I 0.830
Solyc02g064960.2 Solanum lycopersicum Solyc02g064960.2 I 0.828
TCM_000665 Theobroma cacao TCM_000665 I 0.828
Gorai.007G215900 Gossypium raimondii Gorai.007G215900 I 0.828
Gorai.008G077800 Gossypium raimondii Gorai.008G077800 I 0.828
GRMZM2G700665 Zea mays GRMZM2G700665 I 0.827
GSMUA_Achr5G07270_001 Musa acuminata GSMUA_Achr5G07270_001 I 0.827
Pm000974 Prunus mume Pm000974 I 0.827
MDP0000181606 Malus domestica MDP0000181606 I 0.827
GSMUA_Achr8G18550_001 Musa acuminata GSMUA_Achr8G18550_001 I 0.826
BGIOSGA017250 Oryza indica BGIOSGA017250 I 0.825
GRMZM2G174784 Zea mays GRMZM2G174784 I 0.825
OGLUM04G27380 Oryza glumaepatula OGLUM04G27380 I 0.825
OMERI04G22900 Oryza meridionalis OMERI04G22900 I 0.825
ONIVA04G25920 Oryza nivara ONIVA04G25920 I 0.825
OPUNC04G24930 Oryza punctata OPUNC04G24930 I 0.825
ORGLA04G0237800 Oryza glaberrima ORGLA04G0237800 I 0.825
ORUFI04G29120 Oryza rufipogon ORUFI04G29120 I 0.825
Sb06g030670 Sorghum bicolor Sb06g030670 I 0.825
Si012635m.g Setaria italica Si012635m.g I 0.825
BRADI5G24100 Brachypodium distachyon BRADI5G24100 I 0.824
Cucsa.367290 Cucumis sativus Cucsa.367290 I 0.824
Lus10015055.g Linum usitatissimum Lus10015055.g I 0.824
GLYMA03G33470 Glycine max GLYMA03G33470 I 0.823
POPTR_0005s18400 Populus trichocarpa POPTR_0005s18400 I 0.823
AMTR_s00035p00205430 Amborella trichopoda AMTR_s00035p00205430 I 0.822
BGIOSGA018911 Oryza indica BGIOSGA018911 I 0.822
GLYMA11G15650 Glycine max GLYMA11G15650 I 0.822
GLYMA12G07800 Glycine max GLYMA12G07800 I 0.822
GLYMA13G40470 Glycine max GLYMA13G40470 I 0.822
GSMUA_Achr10G03230_001 Musa acuminata GSMUA_Achr10G03230_001 I 0.822
GSMUA_Achr9G03060_001 Musa acuminata GSMUA_Achr9G03060_001 I 0.822
OPUNC05G01480 Oryza punctata OPUNC05G01480 I 0.822
ORGLA05G0015400 Oryza glaberrima ORGLA05G0015400 I 0.822
OS05G0121600 Oryza sativa OS05G0121600 I 0.822
PGSC0003DMG400025390 Solanum tuberosum PGSC0003DMG400025390 I 0.822
PGSC0003DMG400025479 Solanum tuberosum PGSC0003DMG400025479 I 0.822
PGSC0003DMG400027904 Solanum tuberosum PGSC0003DMG400027904 I 0.822
POPTR_0016s08530 Populus trichocarpa POPTR_0016s08530 I 0.822
PRUPE_ppa005230mg Prunus persica PRUPE_ppa005230mg I 0.822
Si025305m.g Setaria italica Si025305m.g I 0.822
TCM_022077 Theobroma cacao TCM_022077 I 0.822
RAP2.7 Vitis vinifera VIT_06s0004g03590 I 0.822
VIT_08s0040g03180 Vitis vinifera VIT_08s0040g03180 I 0.822
Ca_02499 Cicer arietinum Ca_02499 I 0.822
Pm002492 Prunus mume Pm002492 I 0.822
28752.m000339 Ricinus communis 28752.m000339 I 0.822
cassava13566.valid.m1 Manihot esculenta cassava13566.valid.m1 I 0.822
cassava24954.valid.m1 Manihot esculenta cassava24954.valid.m1 I 0.822
Aquca_027_00133 Aquilegia coerulea Aquca_027_00133 I 0.822
Eucgr.J02113 Eucalyptus grandis Eucgr.J02113 I 0.822
Gorai.002G251500 Gossypium raimondii Gorai.002G251500 I 0.822
MDP0000200319 Malus domestica MDP0000200319 I 0.822
orange1.1g010454m.g Citrus sinensis orange1.1g010454m.g I 0.822
Pavir.J11433 Panicum virgatum Pavir.J11433 I 0.822
Pavir.J23348 Panicum virgatum Pavir.J23348 I 0.822
SapurV1A.0247s0170 Salix purpurea SapurV1A.0247s0170 I 0.822
chr3.LjT05P05.30.nd Lotus japonicus chr3.LjT05P05.30.nd I 0.822
PDK_20s1506731g001 Phoenix dactylifera PDK_20s1506731g001 I 0.822
BRADI2G37800 Brachypodium distachyon BRADI2G37800 I 0.821
F775_32962 Aegilops tauschii F775_32962 I 0.821
Solyc10g084340.1 Solanum lycopersicum Solyc10g084340.1 I 0.821
TCM_042000 Theobroma cacao TCM_042000 I 0.821
Traes_1AS_90F3120F8 Triticum aestivum Traes_1AS_90F3120F8 I 0.821
Traes_1BS_E68807072 Triticum aestivum Traes_1BS_E68807072 I 0.821
Traes_1DS_2BB06F54C Triticum aestivum Traes_1DS_2BB06F54C I 0.821
29169.m000017 Ricinus communis 29169.m000017 I 0.821
cassava12358.valid.m1 Manihot esculenta cassava12358.valid.m1 I 0.821
Gorai.004G002100 Gossypium raimondii Gorai.004G002100 I 0.821
Lus10009374.g Linum usitatissimum Lus10009374.g I 0.821
Lus10019331.g Linum usitatissimum Lus10019331.g I 0.821
Pavir.J37968 Panicum virgatum Pavir.J37968 I 0.821
PK07183.1 Cannabis sativa PK07183.1 I 0.821
mgf021945m Mimulus guttatus mgf021945m I 0.820
GSMUA_Achr3G28340_001 Musa acuminata GSMUA_Achr3G28340_001 I 0.819
MTR_2g093060 Medicago truncatula MTR_2g093060 I 0.819
POPTR_0006s13460 Populus trichocarpa POPTR_0006s13460 I 0.819
SapurV1A.0209s0320 Salix purpurea SapurV1A.0209s0320 I 0.819
LjT39B13.80.nc Lotus japonicus LjT39B13.80.nc I 0.819
Cla018124 Citrullus lanatus Cla018124 I 0.817
cassava2301.valid.m1 Manihot esculenta cassava2301.valid.m1 I 0.817
Cucsa.307230 Cucumis sativus Cucsa.307230 I 0.817
Ciclev10028259m.g Citrus clementina Ciclev10028259m.g I 0.817
Lus10023165.g Linum usitatissimum Lus10023165.g I 0.817
PRUPE_ppa003783mg Prunus persica PRUPE_ppa003783mg I 0.815
Pm030172 Prunus mume Pm030172 I 0.815
Eucgr.I00892 Eucalyptus grandis Eucgr.I00892 I 0.815
gene23876-v1.0-hybrid Fragaria vesca gene23876-v1.0-hybrid I 0.815
MDP0000137561 Malus domestica MDP0000137561 I 0.815
LjSGA_005424.1 Lotus japonicus LjSGA_005424.1 I 0.815
Aquca_010_00628 Aquilegia coerulea Aquca_010_00628 I 0.813
Aquca_007_00714 Aquilegia coerulea Aquca_007_00714 I 0.811
Gorai.011G106200 Gossypium raimondii Gorai.011G106200 I 0.811
Ca_14618 Cicer arietinum Ca_14618 I 0.810
SapurV1A.1340s0010 Salix purpurea SapurV1A.1340s0010 I 0.810
MTR_7g100590 Medicago truncatula MTR_7g100590 I 0.807
Ca_12010 Cicer arietinum Ca_12010 I 0.807
Q9XHD3_PETHY Petunia x hybrida Q9XHD3_PETHY D 0.807
evm.TU.supercontig_114.55 Carica papaya evm.TU.supercontig_114.55 I 0.807
BRADI1G30337 Brachypodium distachyon BRADI1G30337 I 0.806
Cucsa.051660 Cucumis sativus Cucsa.051660 I 0.806
Gorai.009G104200 Gossypium raimondii Gorai.009G104200 I 0.806
BGIOSGA013826 Oryza indica BGIOSGA013826 I 0.805
GSMUA_Achr6G33140_001 Musa acuminata GSMUA_Achr6G33140_001 I 0.805
MLOC_43041 Hordeum vulgare MLOC_43041 I 0.805
OGLUM03G38790 Oryza glumaepatula OGLUM03G38790 I 0.805
OMERI03G35820 Oryza meridionalis OMERI03G35820 I 0.805
ONIVA03G40610 Oryza nivara ONIVA03G40610 I 0.805
OPUNC03G36030 Oryza punctata OPUNC03G36030 I 0.805
ORUFI03G40640 Oryza rufipogon ORUFI03G40640 I 0.805
PGSC0003DMG400011046 Solanum tuberosum PGSC0003DMG400011046 I 0.804
GSMUA_AchrUn_randomG10320_001 Musa acuminata GSMUA_AchrUn_randomG10320_001 I 0.802
GLYMA19G36200 Glycine max GLYMA19G36200 I 0.801
GSMUA_Achr4G06100_001 Musa acuminata GSMUA_Achr4G06100_001 I 0.801
GSMUA_Achr6G34420_001 Musa acuminata GSMUA_Achr6G34420_001 I 0.801
VIT_13s0019g03550 Vitis vinifera VIT_13s0019g03550 I 0.801
RAP2.7 Arabidopsis thaliana AT2G28550 D 0.800
GSMUA_Achr11G23870_001 Musa acuminata GSMUA_Achr11G23870_001 I 0.800
Cagra.1809s0003 Capsella grandiflora Cagra.1809s0003 I 0.800
Carubv10025387m.g Capsella rubella Carubv10025387m.g I 0.800
Thhalv10016626m.g Eutrema salsugineum Thhalv10016626m.g I 0.800
Bo4g070350 Brassica oleracea Bo4g070350 I 0.799
Bra011939 Brassica rapa Bra011939 I 0.799
Lus10019905.g Linum usitatissimum Lus10019905.g I 0.799
Lus10026477.g Linum usitatissimum Lus10026477.g I 0.799
BGIOSGA025426 Oryza indica BGIOSGA025426 I 0.798
MLOC_43575 Hordeum vulgare MLOC_43575 I 0.798
MTR_4g061200 Medicago truncatula MTR_4g061200 I 0.798
OBART07G08110 Oryza barthii OBART07G08110 I 0.798
OGLUM07G07330 Oryza glumaepatula OGLUM07G07330 I 0.798
OLONG_021321 Oryza longistaminata OLONG_021321 I 0.798
OMERI07G06850 Oryza meridionalis OMERI07G06850 I 0.798
ONIVA03G25220 Oryza nivara ONIVA03G25220 I 0.798
OPUNC07G07690 Oryza punctata OPUNC07G07690 I 0.798
ORGLA07G0068600 Oryza glaberrima ORGLA07G0068600 I 0.798
ORUFI07G08180 Oryza rufipogon ORUFI07G08180 I 0.798
OS07G0235800 Oryza sativa OS07G0235800 I 0.798
OB03G45870 Oryza brachyantha OB03G45870 I 0.797
SapurV1A.0038s0220 Salix purpurea SapurV1A.0038s0220 I 0.797
Thhalv10004742m.g Eutrema salsugineum Thhalv10004742m.g I 0.797
BRADI1G53650 Brachypodium distachyon BRADI1G53650 I 0.796
GRMZM2G176175 Zea mays GRMZM2G176175 I 0.796
Sb02g007000 Sorghum bicolor Sb02g007000 I 0.796
Si029636m.g Setaria italica Si029636m.g I 0.796
mgf005133m Mimulus guttatus mgf005133m I 0.796
mgf010466m Mimulus guttatus mgf010466m I 0.796
Pavir.Ba03394 Panicum virgatum Pavir.Ba03394 I 0.796
GLYMA15G04930 Glycine max GLYMA15G04930 I 0.795
Lus10004990.g Linum usitatissimum Lus10004990.g I 0.795
GRMZM5G862109 Zea mays GRMZM5G862109 I 0.794
Sb01g003400 Sorghum bicolor Sb01g003400 I 0.794
Si036068m.g Setaria italica Si036068m.g I 0.794
Ciclev10025364m.g Citrus clementina Ciclev10025364m.g I 0.794
orange1.1g009943m.g Citrus sinensis orange1.1g009943m.g I 0.794
Pavir.J23520 Panicum virgatum Pavir.J23520 I 0.794
Pavir.J41060 Panicum virgatum Pavir.J41060 I 0.794
GSMUA_Achr8G01980_001 Musa acuminata GSMUA_Achr8G01980_001 I 0.793
POPTR_0008s04490 Populus trichocarpa POPTR_0008s04490 I 0.791
GSMUA_Achr5G29290_001 Musa acuminata GSMUA_Achr5G29290_001 I 0.790
Lus10018124.g Linum usitatissimum Lus10018124.g I 0.790
GSMUA_Achr9G04270_001 Musa acuminata GSMUA_Achr9G04270_001 I 0.787
GSMUA_Achr8G21030_001 Musa acuminata GSMUA_Achr8G21030_001 I 0.785
Lus10041595.g Linum usitatissimum Lus10041595.g I 0.784
Solyc06g075510.2 Solanum lycopersicum Solyc06g075510.2 I 0.783
Eucgr.B02453 Eucalyptus grandis Eucgr.B02453 I 0.783
TOE3 Arabidopsis thaliana AT5G67180 I 0.781
Bo7g064000 Brassica oleracea Bo7g064000 I 0.781
Bra012139 Brassica rapa Bra012139 I 0.781
TOE3 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002628 I 0.781
Bostr.0568s0140 Boechera stricta Bostr.0568s0140 I 0.781
Cagra.0342s0004 Capsella grandiflora Cagra.0342s0004 I 0.781
Carubv10026667m.g Capsella rubella Carubv10026667m.g I 0.781
MDP0000163645 Malus domestica MDP0000163645 I 0.779
Ciclev10031306m.g Citrus clementina Ciclev10031306m.g I 0.777
orange1.1g010763m.g Citrus sinensis orange1.1g010763m.g I 0.777
AMTR_s00058p00216470 Amborella trichopoda AMTR_s00058p00216470 I 0.776
cassava13884.valid.m1 Manihot esculenta cassava13884.valid.m1 I 0.775
gene18102-v1.0-hybrid Fragaria vesca gene18102-v1.0-hybrid I 0.775
GRMZM2G416701 Zea mays GRMZM2G416701 I 0.766
gene25394-v1.0-hybrid Fragaria vesca gene25394-v1.0-hybrid I 0.764
OS03G0818800 Oryza sativa OS03G0818800 I 0.762
evm.TU.supercontig_139.43 Carica papaya evm.TU.supercontig_139.43 I 0.761
LPERR05G01420 Leersia perrieri LPERR05G01420 I 0.759
OLONG_026757 Oryza longistaminata OLONG_026757 I 0.759
Lus10036141.g Linum usitatissimum Lus10036141.g I 0.758
Si006371m.g Setaria italica Si006371m.g I 0.754
Cla020549 Citrullus lanatus Cla020549 I 0.754
Ciclev10011588m.g Citrus clementina Ciclev10011588m.g I 0.752
Cucsa.065640 Cucumis sativus Cucsa.065640 I 0.744
Cla018549 Citrullus lanatus Cla018549 I 0.740
Traes_7DL_7B0ABD21E Triticum aestivum Traes_7DL_7B0ABD21E I 0.697
Thhalv10025268m.g Eutrema salsugineum Thhalv10025268m.g I 0.691