Thhalv10025862m.g (Eutrema salsugineum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Thhalv10025862m.g T009988_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF054
M06647_2.00 		Arabidopsis thaliana
NNNNNNNNNHHDSCRCCGHC
GDCGGYGSHDDNNNNNNNNN		 Dap-seq
OMalley et al.(2016)
At4g28140_col_a 		0.822 0.980
ERF054
M06648_2.00 		Arabidopsis thaliana
NNNNHDBCRCCGHCM
KGDCGGYGVHDNNNN		 Dap-seq
OMalley et al.(2016)
At4g28140_colamp_a 		0.822 0.980
AT5G65130
M06686_2.00 		Arabidopsis thaliana
YCDYCDCCRCCGCCN
NGGCGGYGGHGRHGR		 Dap-seq
OMalley et al.(2016)
At5g65130_col_a 		0.703 0.760
AT5G65130
M06687_2.00 		Arabidopsis thaliana
NNNNHNNHDSCRCCGMCMW
WKGKCGGYGSHDNNDNNNN		 Dap-seq
OMalley et al.(2016)
At5g65130_colamp_a 		0.703 0.760
ERF055
M06577_2.00 		Arabidopsis thaliana
NHDYCACCGHCMHH
DDKGDCGGTGRHDN		 Dap-seq
OMalley et al.(2016)
At1g36060_col_a 		0.701 0.860
ERF055
M06578_2.00 		Arabidopsis thaliana
NHDYCACCGHCMHH
DDKGDCGGTGRHDN		 Dap-seq
OMalley et al.(2016)
At1g36060_colamp_a 		0.701 0.860
RAP2-4
M01612_2.00 		Arabidopsis thaliana
NRCCGHCMNN
NNKGDCGGYN		 PBM
Weirauch et al.(2014)
pTH8092 		0.685 0.820
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10025862m AP2 143 194

Links

Other AP2 family TFs
Other Eutrema salsugineum TFs

167 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ERF054 Arabidopsis thaliana AT4G28140 D 0.822
Bo8g054130 Brassica oleracea Bo8g054130 I 0.822
Bra010383 Brassica rapa Bra010383 I 0.822
fgenesh2_kg.7__1395__AT4G28140.1 Arabidopsis lyrata fgenesh2_kg.7__1395__AT4G28140.1 I 0.822
Bostr.7867s0648 Boechera stricta Bostr.7867s0648 I 0.822
Cagra.1225s0083 Capsella grandiflora Cagra.1225s0083 I 0.822
Carubv10005203m.g Capsella rubella Carubv10005203m.g I 0.822
Bra026280 Brassica rapa Bra026280 I 0.807
Bo7g111910 Brassica oleracea Bo7g111910 I 0.802
Bra024222 Brassica rapa Bra024222 I 0.802
Bo1g051230 Brassica oleracea Bo1g051230 I 0.794
ERF053 Arabidopsis thaliana AT2G20880 I 0.749
Bo8g102130 Brassica oleracea Bo8g102130 I 0.749
scaffold_304438.1 Arabidopsis lyrata scaffold_304438.1 I 0.749
Bra031146 Brassica rapa Bra031146 I 0.741
VIT_19s0014g03180 Vitis vinifera VIT_19s0014g03180 I 0.741
Gorai.012G130600 Gossypium raimondii Gorai.012G130600 I 0.726
Bostr.7903s0066 Boechera stricta Bostr.7903s0066 I 0.713
Cagra.8551s0004 Capsella grandiflora Cagra.8551s0004 I 0.713
Carubv10014129m.g Capsella rubella Carubv10014129m.g I 0.713
AT5G65130 Arabidopsis thaliana AT5G65130 D 0.703
scaffold_803239.1 Arabidopsis lyrata scaffold_803239.1 I 0.703
Gorai.008G153600 Gossypium raimondii Gorai.008G153600 I 0.703
ERF055 Arabidopsis thaliana AT1G36060 D 0.701
Bo5g069450 Brassica oleracea Bo5g069450 I 0.701
Bra040381 Brassica rapa Bra040381 I 0.701
fgenesh2_kg.1__3660__AT1G36060.1 Arabidopsis lyrata fgenesh2_kg.1__3660__AT1G36060.1 I 0.701
GSMUA_Achr10G19030_001 Musa acuminata GSMUA_Achr10G19030_001 I 0.701
Bostr.20910s0012 Boechera stricta Bostr.20910s0012 I 0.701
Carubv10012538m.g Capsella rubella Carubv10012538m.g I 0.701
AMTR_s00107p00095070 Amborella trichopoda AMTR_s00107p00095070 I 0.700
Bo3g100470 Brassica oleracea Bo3g100470 I 0.698
VIT_00s0662g00030 Vitis vinifera VIT_00s0662g00030 I 0.697
VIT_00s0662g00040 Vitis vinifera VIT_00s0662g00040 I 0.697
Bo04101s010 Brassica oleracea Bo04101s010 I 0.695
Ca_16631 Cicer arietinum Ca_16631 I 0.695
Cla023489 Citrullus lanatus Cla023489 I 0.695
Cucsa.064390 Cucumis sativus Cucsa.064390 I 0.695
Cagra.1707s0001 Capsella grandiflora Cagra.1707s0001 I 0.695
Carubv10009949m.g Capsella rubella Carubv10009949m.g I 0.695
MDP0000453797 Malus domestica MDP0000453797 I 0.695
MDP0000683814 Malus domestica MDP0000683814 I 0.695
MDP0000865032 Malus domestica MDP0000865032 I 0.695
GLYMA05G31370 Glycine max GLYMA05G31370 I 0.692
GLYMA08G14600 Glycine max GLYMA08G14600 I 0.692
GLYMA18G02170 Glycine max GLYMA18G02170 I 0.692
chr5.CM0909.290.nc Lotus japonicus chr5.CM0909.290.nc I 0.692
AMTR_s00009p00268560 Amborella trichopoda AMTR_s00009p00268560 I 0.691
GSMUA_Achr3G01650_001 Musa acuminata GSMUA_Achr3G01650_001 I 0.691
POPTR_0002s09480 Populus trichocarpa POPTR_0002s09480 I 0.691
mgf002388m Mimulus guttatus mgf002388m I 0.691
Eucgr.F02440 Eucalyptus grandis Eucgr.F02440 I 0.691
SapurV1A.0010s0170 Salix purpurea SapurV1A.0010s0170 I 0.691
PK27482.1 Cannabis sativa PK27482.1 I 0.691
Bo7g119000 Brassica oleracea Bo7g119000 I 0.688
Bra003659 Brassica rapa Bra003659 I 0.688
Bra017879 Brassica rapa Bra017879 I 0.688
Thhalv10025958m.g Eutrema salsugineum Thhalv10025958m.g I 0.688
PGSC0003DMG400008538 Solanum tuberosum PGSC0003DMG400008538 I 0.687
PGSC0003DMG400020625 Solanum tuberosum PGSC0003DMG400020625 I 0.687
POPTR_0007s05690 Populus trichocarpa POPTR_0007s05690 I 0.687
Solyc04g054910.2 Solanum lycopersicum Solyc04g054910.2 I 0.687
Solyc12g056980.1 Solanum lycopersicum Solyc12g056980.1 I 0.687
TCM_001147 Theobroma cacao TCM_001147 I 0.687
28206.m000104 Ricinus communis 28206.m000104 I 0.687
cassava23925.valid.m1 Manihot esculenta cassava23925.valid.m1 I 0.687
cassava31195.valid.m1 Manihot esculenta cassava31195.valid.m1 I 0.687
mgf023311m Mimulus guttatus mgf023311m I 0.687
Aquca_014_00591 Aquilegia coerulea Aquca_014_00591 I 0.687
Gorai.003G038200 Gossypium raimondii Gorai.003G038200 I 0.687
SapurV1A.0075s0120 Salix purpurea SapurV1A.0075s0120 I 0.687
SapurV1A.0684s0120 Salix purpurea SapurV1A.0684s0120 I 0.687
PK18885.1 Cannabis sativa PK18885.1 I 0.687
AMTR_s00010p00194910 Amborella trichopoda AMTR_s00010p00194910 I 0.685
RAP2-13 Arabidopsis thaliana AT1G22190 I 0.685
RAP2-4 Arabidopsis thaliana AT1G78080 D 0.685
Bo5g037400 Brassica oleracea Bo5g037400 I 0.685
Bo6g121730 Brassica oleracea Bo6g121730 I 0.685
Bra008343 Brassica rapa Bra008343 I 0.685
Bra015634 Brassica rapa Bra015634 I 0.685
Bra031371 Brassica rapa Bra031371 I 0.685
fgenesh2_kg.1__2408__AT1G22190.1 Arabidopsis lyrata fgenesh2_kg.1__2408__AT1G22190.1 I 0.685
RAP2.4 Arabidopsis lyrata fgenesh2_kg.2__2105__AT1G78080.1 I 0.685
GLYMA04G11290 Glycine max GLYMA04G11290 I 0.685
GLYMA06G11010 Glycine max GLYMA06G11010 I 0.685
GSMUA_Achr10G30440_001 Musa acuminata GSMUA_Achr10G30440_001 I 0.685
GSMUA_AchrUn_randomG20840_001 Musa acuminata GSMUA_AchrUn_randomG20840_001 I 0.685
MTR_3g074130 Medicago truncatula MTR_3g074130 I 0.685
POPTR_0005s16690 Populus trichocarpa POPTR_0005s16690 I 0.685
PRUPE_ppa007193mg Prunus persica PRUPE_ppa007193mg I 0.685
PRUPE_ppa008234mg Prunus persica PRUPE_ppa008234mg I 0.685
PRUPE_ppa020676mg Prunus persica PRUPE_ppa020676mg I 0.685
TCM_034939 Theobroma cacao TCM_034939 I 0.685
VIT_18s0001g05250 Vitis vinifera VIT_18s0001g05250 I 0.685
Cla014376 Citrullus lanatus Cla014376 I 0.685
Cla022420 Citrullus lanatus Cla022420 I 0.685
Pm002052 Prunus mume Pm002052 I 0.685
Pm004824 Prunus mume Pm004824 I 0.685
29908.m006005 Ricinus communis 29908.m006005 I 0.685
cassava10153.m1 Manihot esculenta cassava10153.m1 I 0.685
Cucsa.154520 Cucumis sativus Cucsa.154520 I 0.685
Aquca_014_00592 Aquilegia coerulea Aquca_014_00592 I 0.685
Bostr.12659s0070 Boechera stricta Bostr.12659s0070 I 0.685
Bostr.20129s0241 Boechera stricta Bostr.20129s0241 I 0.685
Cagra.0096s0029 Capsella grandiflora Cagra.0096s0029 I 0.685
Carubv10020567m.g Capsella rubella Carubv10020567m.g I 0.685
Ciclev10001563m.g Citrus clementina Ciclev10001563m.g I 0.685
Ciclev10025961m.g Citrus clementina Ciclev10025961m.g I 0.685
evm.TU.supercontig_36.112 Carica papaya evm.TU.supercontig_36.112 I 0.685
evm.TU.supercontig_996.1 Carica papaya evm.TU.supercontig_996.1 I 0.685
gene22114-v1.0-hybrid Fragaria vesca gene22114-v1.0-hybrid I 0.685
Gorai.009G238800 Gossypium raimondii Gorai.009G238800 I 0.685
Gorai.010G043200 Gossypium raimondii Gorai.010G043200 I 0.685
Lus10020913.g Linum usitatissimum Lus10020913.g I 0.685
Lus10033463.g Linum usitatissimum Lus10033463.g I 0.685
MDP0000313476 Malus domestica MDP0000313476 I 0.685
orange1.1g017798m.g Citrus sinensis orange1.1g017798m.g I 0.685
orange1.1g018103m.g Citrus sinensis orange1.1g018103m.g I 0.685
Thhalv10008326m.g Eutrema salsugineum Thhalv10008326m.g I 0.685
Thhalv10018771m.g Eutrema salsugineum Thhalv10018771m.g I 0.685
LjSGA_026196.1 Lotus japonicus LjSGA_026196.1 I 0.685
MTR_5g062700 Medicago truncatula MTR_5g062700 I 0.684
BGIOSGA011298 Oryza indica BGIOSGA011298 I 0.683
Bra024357 Brassica rapa Bra024357 I 0.683
OGLUM03G06750 Oryza glumaepatula OGLUM03G06750 I 0.683
OMERI03G06570 Oryza meridionalis OMERI03G06570 I 0.683
ONIVA03G06360 Oryza nivara ONIVA03G06360 I 0.683
OPUNC03G06400 Oryza punctata OPUNC03G06400 I 0.683
ORGLA03G0064600 Oryza glaberrima ORGLA03G0064600 I 0.683
ORUFI03G06570 Oryza rufipogon ORUFI03G06570 I 0.683
OS03G0191900 Oryza sativa OS03G0191900 I 0.683
Cucsa.104510 Cucumis sativus Cucsa.104510 I 0.683
Lus10016801.g Linum usitatissimum Lus10016801.g I 0.683
ERF060 Arabidopsis thaliana AT4G39780 I 0.682
fgenesh2_kg.7__195__AT4G39780.1 Arabidopsis lyrata fgenesh2_kg.7__195__AT4G39780.1 I 0.682
Bostr.25542s0167 Boechera stricta Bostr.25542s0167 I 0.682
Bo3g152610 Brassica oleracea Bo3g152610 I 0.681
Bra010657 Brassica rapa Bra010657 I 0.681
GRMZM2G003466 Zea mays GRMZM2G003466 I 0.681
POPTR_0005s07900 Populus trichocarpa POPTR_0005s07900 I 0.681
Sb01g044410 Sorghum bicolor Sb01g044410 I 0.681
Si036827m.g Setaria italica Si036827m.g I 0.681
Gorai.006G207800 Gossypium raimondii Gorai.006G207800 I 0.681
Pavir.Ia04894 Panicum virgatum Pavir.Ia04894 I 0.681
LPERR03G05980 Leersia perrieri LPERR03G05980 I 0.680
MTR_8g090350 Medicago truncatula MTR_8g090350 I 0.680
Ca_09578 Cicer arietinum Ca_09578 I 0.680
cassava36179.valid.m1 Manihot esculenta cassava36179.valid.m1 I 0.680
e_gw1.187.17.1 Physcomitrella patens e_gw1.187.17.1 I 0.680
Aquca_034_00155 Aquilegia coerulea Aquca_034_00155 I 0.680
Eucgr.I00422 Eucalyptus grandis Eucgr.I00422 I 0.680
Eucgr.L03532 Eucalyptus grandis Eucgr.L03532 I 0.680
SapurV1A.0335s0040 Salix purpurea SapurV1A.0335s0040 I 0.680
AMTR_s00089p00102760 Amborella trichopoda AMTR_s00089p00102760 I 0.678
Bo1g002840 Brassica oleracea Bo1g002840 I 0.678
Bo6g081850 Brassica oleracea Bo6g081850 I 0.678
GRMZM2G113060 Zea mays GRMZM2G113060 I 0.678
Cagra.5414s0001 Capsella grandiflora Cagra.5414s0001 I 0.678
Carubv10007787m.g Capsella rubella Carubv10007787m.g I 0.678
Bra011833 Brassica rapa Bra011833 I 0.677
GLYMA13G01930 Glycine max GLYMA13G01930 I 0.677
GLYMA14G34590 Glycine max GLYMA14G34590 I 0.677
GRMZM2G039870 Zea mays GRMZM2G039870 I 0.677
GSMUA_Achr9G12950_001 Musa acuminata GSMUA_Achr9G12950_001 I 0.677
PRUPE_ppa010345mg Prunus persica PRUPE_ppa010345mg I 0.677
Si036893m.g Setaria italica Si036893m.g I 0.677
Eucgr.F00497 Eucalyptus grandis Eucgr.F00497 I 0.677