TCM_000019 (Theobroma cacao)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF01388 (ARID) IPR001606 TCM_000019 T015682_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARID3
M06695_2.00 		Arabidopsis thaliana
AAWWHNAAATYAAWW
WWTTRATTTNDWWTT		 Dap-seq
OMalley et al.(2016)
AT2G17410_col_a 		0.445 0.711
For this family, TFs with SR scores > 0.422 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EOX90591 ARID/BRIGHT 242 321

Links

Other ARID/BRIGHT family TFs
Other Theobroma cacao TFs

64 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA05G10756 Glycine max GLYMA05G10756 I 0.506
SapurV1A.0216s0430 Salix purpurea SapurV1A.0216s0430 N 0.485
SapurV1A.2929s0030 Salix purpurea SapurV1A.2929s0030 N 0.485
GLYMA01G36040 Glycine max GLYMA01G36040 I 0.482
GLYMA11G09370 Glycine max GLYMA11G09370 I 0.482
PRUPE_ppa003469mg Prunus persica PRUPE_ppa003469mg I 0.482
Ca_10698 Cicer arietinum Ca_10698 I 0.482
Cla009111 Citrullus lanatus Cla009111 I 0.482
Pm026967 Prunus mume Pm026967 I 0.482
Cucsa.323280 Cucumis sativus Cucsa.323280 I 0.482
Ciclev10025351m.g Citrus clementina Ciclev10025351m.g I 0.482
Eucgr.I02198 Eucalyptus grandis Eucgr.I02198 I 0.482
Gorai.003G000800 Gossypium raimondii Gorai.003G000800 I 0.482
MDP0000188323 Malus domestica MDP0000188323 I 0.482
MDP0000834789 Malus domestica MDP0000834789 I 0.482
orange1.1g009744m.g Citrus sinensis orange1.1g009744m.g I 0.482
PK12537.1 Cannabis sativa PK12537.1 I 0.482
BGIOSGA023283 Oryza indica BGIOSGA023283 I 0.459
GRMZM2G180654 Zea mays GRMZM2G180654 I 0.459
GRMZM5G883993 Zea mays GRMZM5G883993 I 0.459
OB06G29250 Oryza brachyantha OB06G29250 I 0.459
OS06G0622300 Oryza sativa OS06G0622300 I 0.459
Sb10g024400 Sorghum bicolor Sb10g024400 I 0.459
Si006372m.g Setaria italica Si006372m.g I 0.459
VIT_04s0044g01840 Vitis vinifera VIT_04s0044g01840 I 0.459
29682.m000576 Ricinus communis 29682.m000576 I 0.459
cassava23401.valid.m1 Manihot esculenta cassava23401.valid.m1 I 0.459
cassava24840.valid.m1 Manihot esculenta cassava24840.valid.m1 I 0.459
Pavir.Db00824 Panicum virgatum Pavir.Db00824 I 0.459
BRADI1G55550 Brachypodium distachyon BRADI1G55550 I 0.446
ARID3 Arabidopsis thaliana AT2G17410 D 0.445
fgenesh2_kg.3__3325__AT2G17410.1 Arabidopsis lyrata fgenesh2_kg.3__3325__AT2G17410.1 I 0.445
GSMUA_AchrUn_randomG12940_001 Musa acuminata GSMUA_AchrUn_randomG12940_001 I 0.445
Cagra.6788s0003 Capsella grandiflora Cagra.6788s0003 I 0.445
Carubv10012979m.g Capsella rubella Carubv10012979m.g I 0.445
Thhalv10022553m.g Eutrema salsugineum Thhalv10022553m.g I 0.445
PDK_20s1315201g001 Phoenix dactylifera PDK_20s1315201g001 I 0.441
AMTR_s00022p00128600 Amborella trichopoda AMTR_s00022p00128600 I 0.439
BGIOSGA005739 Oryza indica BGIOSGA005739 I 0.439
BRADI3G53270 Brachypodium distachyon BRADI3G53270 I 0.439
F775_06069 Aegilops tauschii F775_06069 I 0.439
GLYMA09G32820 Glycine max GLYMA09G32820 I 0.439
GRMZM2G110109 Zea mays GRMZM2G110109 I 0.439
GRMZM2G421899 Zea mays GRMZM2G421899 I 0.439
OB02G37240 Oryza brachyantha OB02G37240 I 0.439
OBART02G30070 Oryza barthii OBART02G30070 I 0.439
OGLUM02G30740 Oryza glumaepatula OGLUM02G30740 I 0.439
OMERI02G28920 Oryza meridionalis OMERI02G28920 I 0.439
ONIVA02G32840 Oryza nivara ONIVA02G32840 I 0.439
OPUNC02G27630 Oryza punctata OPUNC02G27630 I 0.439
ORGLA02G0256100 Oryza glaberrima ORGLA02G0256100 I 0.439
ORUFI02G31730 Oryza rufipogon ORUFI02G31730 I 0.439
OS02G0714300 Oryza sativa OS02G0714300 I 0.439
Sb04g029990 Sorghum bicolor Sb04g029990 I 0.439
Si017073m.g Setaria italica Si017073m.g I 0.439
Traes_6AL_D304A3C3B Triticum aestivum Traes_6AL_D304A3C3B I 0.439
Traes_6BL_936B5B999 Triticum aestivum Traes_6BL_936B5B999 I 0.439
Traes_6DL_E6E385C31 Triticum aestivum Traes_6DL_E6E385C31 I 0.439
TRIUR3_34317 Triticum urartu TRIUR3_34317 I 0.439
Pavir.Aa00633 Panicum virgatum Pavir.Aa00633 I 0.439
Pavir.Ab03084 Panicum virgatum Pavir.Ab03084 I 0.439
PDK_20s1326081g004 Phoenix dactylifera PDK_20s1326081g004 I 0.439
Bra002058 Brassica rapa Bra002058 I 0.436
LPERR02G24480 Leersia perrieri LPERR02G24480 I 0.426