Carubv10020299m.g (Capsella rubella)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01388 (ARID) IPR001606 Carubv10020299m.g T016073_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARID3
M06695_2.00 		Arabidopsis thaliana
AAWWHNAAATYAAWW
WWTTRATTTNDWWTT		 Dap-seq
OMalley et al.(2016)
AT2G17410_col_a 		0.667 0.776
ARID6
M06694_2.00 		Arabidopsis thaliana
HAATTRAWTTN
NAAWTYAATTD		 Dap-seq
OMalley et al.(2016)
AT1G20910_col_a 		0.659 0.824
For this family, TFs with SR scores > 0.422 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10020299m ARID/BRIGHT 155 240

Links

Other ARID/BRIGHT family TFs
Other Capsella rubella TFs

153 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AT1G76510 Arabidopsis thaliana AT1G76510 I 0.785
fgenesh2_kg.2__1939__AT1G76510.1 Arabidopsis lyrata fgenesh2_kg.2__1939__AT1G76510.1 I 0.785
Bostr.20129s0090 Boechera stricta Bostr.20129s0090 I 0.785
Cagra.2281s0033 Capsella grandiflora Cagra.2281s0033 I 0.785
Thhalv10018578m.g Eutrema salsugineum Thhalv10018578m.g I 0.785
GLYMA04G01560 Glycine max GLYMA04G01560 I 0.771
GLYMA06G01640 Glycine max GLYMA06G01640 I 0.771
MTR_3g116200 Medicago truncatula MTR_3g116200 I 0.771
Ca_04797 Cicer arietinum Ca_04797 I 0.771
chr1.CM0150.370.nc Lotus japonicus chr1.CM0150.370.nc I 0.771
PRUPE_ppa006712mg Prunus persica PRUPE_ppa006712mg I 0.762
Pm022898 Prunus mume Pm022898 I 0.762
evm.TU.supercontig_26.2 Carica papaya evm.TU.supercontig_26.2 I 0.762
PK02181.1 Cannabis sativa PK02181.1 I 0.762
PGSC0003DMG400010001 Solanum tuberosum PGSC0003DMG400010001 I 0.748
POPTR_0002s00550 Populus trichocarpa POPTR_0002s00550 I 0.748
Solyc04g082820.2 Solanum lycopersicum Solyc04g082820.2 I 0.748
TCM_034809 Theobroma cacao TCM_034809 I 0.748
VIT_18s0122g00560 Vitis vinifera VIT_18s0122g00560 I 0.748
30170.m013806 Ricinus communis 30170.m013806 I 0.748
cassava27165.m1 Manihot esculenta cassava27165.m1 I 0.748
mgf001698m Mimulus guttatus mgf001698m I 0.748
mgf002691m Mimulus guttatus mgf002691m I 0.748
Ciclev10001099m.g Citrus clementina Ciclev10001099m.g I 0.748
Eucgr.F01815 Eucalyptus grandis Eucgr.F01815 I 0.748
Gorai.002G112400 Gossypium raimondii Gorai.002G112400 I 0.748
orange1.1g012780m.g Citrus sinensis orange1.1g012780m.g I 0.748
SapurV1A.0016s0160 Salix purpurea SapurV1A.0016s0160 I 0.748
SapurV1A.0554s0250 Salix purpurea SapurV1A.0554s0250 I 0.748
Bo6g120610 Brassica oleracea Bo6g120610 I 0.744
Lus10016045.g Linum usitatissimum Lus10016045.g I 0.725
mg023226m Mimulus guttatus mg023226m I 0.719
mgf014392m Mimulus guttatus mgf014392m I 0.719
PRUPE_ppa001071mg Prunus persica PRUPE_ppa001071mg I 0.718
Pm020703 Prunus mume Pm020703 I 0.718
30162.m001290 Ricinus communis 30162.m001290 I 0.718
MDP0000890776 Malus domestica MDP0000890776 I 0.718
Eucgr.I01546 Eucalyptus grandis Eucgr.I01546 I 0.710
mgf005009m Mimulus guttatus mgf005009m I 0.708
BGIOSGA023283 Oryza indica BGIOSGA023283 I 0.705
GLYMA01G36040 Glycine max GLYMA01G36040 I 0.705
GLYMA09G32820 Glycine max GLYMA09G32820 I 0.705
GLYMA11G09370 Glycine max GLYMA11G09370 I 0.705
GRMZM2G180654 Zea mays GRMZM2G180654 I 0.705
GRMZM5G883993 Zea mays GRMZM5G883993 I 0.705
MTR_5g024920 Medicago truncatula MTR_5g024920 I 0.705
OB06G29250 Oryza brachyantha OB06G29250 I 0.705
OS06G0622300 Oryza sativa OS06G0622300 I 0.705
POPTR_0004s21870 Populus trichocarpa POPTR_0004s21870 I 0.705
PRUPE_ppa003469mg Prunus persica PRUPE_ppa003469mg I 0.705
Sb10g024400 Sorghum bicolor Sb10g024400 I 0.705
Si006372m.g Setaria italica Si006372m.g I 0.705
TCM_007605 Theobroma cacao TCM_007605 I 0.705
VIT_04s0044g01840 Vitis vinifera VIT_04s0044g01840 I 0.705
Ca_10698 Cicer arietinum Ca_10698 I 0.705
Cla009111 Citrullus lanatus Cla009111 I 0.705
Pm026967 Prunus mume Pm026967 I 0.705
29682.m000576 Ricinus communis 29682.m000576 I 0.705
cassava23401.valid.m1 Manihot esculenta cassava23401.valid.m1 I 0.705
cassava24840.valid.m1 Manihot esculenta cassava24840.valid.m1 I 0.705
Cucsa.323280 Cucumis sativus Cucsa.323280 I 0.705
Ciclev10025351m.g Citrus clementina Ciclev10025351m.g I 0.705
Ciclev10030351m.g Citrus clementina Ciclev10030351m.g I 0.705
Eucgr.I02198 Eucalyptus grandis Eucgr.I02198 I 0.705
Gorai.003G000800 Gossypium raimondii Gorai.003G000800 I 0.705
Gorai.012G137700 Gossypium raimondii Gorai.012G137700 I 0.705
Lus10001618.g Linum usitatissimum Lus10001618.g I 0.705
Lus10022981.g Linum usitatissimum Lus10022981.g I 0.705
MDP0000188323 Malus domestica MDP0000188323 I 0.705
MDP0000834789 Malus domestica MDP0000834789 I 0.705
orange1.1g004663m.g Citrus sinensis orange1.1g004663m.g I 0.705
orange1.1g009744m.g Citrus sinensis orange1.1g009744m.g I 0.705
Pavir.Db00824 Panicum virgatum Pavir.Db00824 I 0.705
PK12537.1 Cannabis sativa PK12537.1 I 0.705
LPERR02G24480 Leersia perrieri LPERR02G24480 I 0.698
BRADI1G55550 Brachypodium distachyon BRADI1G55550 I 0.696
AMTR_s00022p00128600 Amborella trichopoda AMTR_s00022p00128600 I 0.685
BGIOSGA005739 Oryza indica BGIOSGA005739 I 0.685
BRADI3G53270 Brachypodium distachyon BRADI3G53270 I 0.685
F775_06069 Aegilops tauschii F775_06069 I 0.685
GRMZM2G110109 Zea mays GRMZM2G110109 I 0.685
GRMZM2G421899 Zea mays GRMZM2G421899 I 0.685
OB02G37240 Oryza brachyantha OB02G37240 I 0.685
OBART02G30070 Oryza barthii OBART02G30070 I 0.685
OGLUM02G30740 Oryza glumaepatula OGLUM02G30740 I 0.685
OMERI02G28920 Oryza meridionalis OMERI02G28920 I 0.685
ONIVA02G32840 Oryza nivara ONIVA02G32840 I 0.685
OPUNC02G27630 Oryza punctata OPUNC02G27630 I 0.685
ORGLA02G0256100 Oryza glaberrima ORGLA02G0256100 I 0.685
ORUFI02G31730 Oryza rufipogon ORUFI02G31730 I 0.685
OS02G0714300 Oryza sativa OS02G0714300 I 0.685
Sb04g029990 Sorghum bicolor Sb04g029990 I 0.685
Si017073m.g Setaria italica Si017073m.g I 0.685
Traes_6AL_D304A3C3B Triticum aestivum Traes_6AL_D304A3C3B I 0.685
Traes_6BL_936B5B999 Triticum aestivum Traes_6BL_936B5B999 I 0.685
Traes_6DL_E6E385C31 Triticum aestivum Traes_6DL_E6E385C31 I 0.685
TRIUR3_34317 Triticum urartu TRIUR3_34317 I 0.685
Aquca_007_00955 Aquilegia coerulea Aquca_007_00955 I 0.685
Pavir.Aa00633 Panicum virgatum Pavir.Aa00633 I 0.685
Pavir.Ab03084 Panicum virgatum Pavir.Ab03084 I 0.685
PDK_20s1326081g004 Phoenix dactylifera PDK_20s1326081g004 I 0.685
Thhalv10007750m.g Eutrema salsugineum Thhalv10007750m.g I 0.682
GLYMA16G21840 Glycine max GLYMA16G21840 I 0.672
Bostr.7128s0681 Boechera stricta Bostr.7128s0681 I 0.672
Cagra.6160s0006 Capsella grandiflora Cagra.6160s0006 I 0.672
Carubv10009301m.g Capsella rubella Carubv10009301m.g I 0.672
ARID3 Arabidopsis thaliana AT2G17410 D 0.667
Bo9g024490 Brassica oleracea Bo9g024490 I 0.667
Bra037275 Brassica rapa Bra037275 I 0.667
fgenesh2_kg.3__3325__AT2G17410.1 Arabidopsis lyrata fgenesh2_kg.3__3325__AT2G17410.1 I 0.667
GSMUA_AchrUn_randomG12940_001 Musa acuminata GSMUA_AchrUn_randomG12940_001 I 0.667
Traes_2AS_49D6010DA1 Triticum aestivum Traes_2AS_49D6010DA1 I 0.667
Traes_2BS_B3411790F Triticum aestivum Traes_2BS_B3411790F I 0.667
Traes_2DL_C465ACBE4 Triticum aestivum Traes_2DL_C465ACBE4 I 0.667
Bostr.18351s0201 Boechera stricta Bostr.18351s0201 I 0.667
Cagra.6788s0003 Capsella grandiflora Cagra.6788s0003 I 0.667
Carubv10012979m.g Capsella rubella Carubv10012979m.g I 0.667
gene17116-v1.0-hybrid Fragaria vesca gene17116-v1.0-hybrid I 0.667
Thhalv10022553m.g Eutrema salsugineum Thhalv10022553m.g I 0.667
PDK_20s1315201g001 Phoenix dactylifera PDK_20s1315201g001 I 0.664
SELMODRAFT_271464 Selaginella moellendorffii SELMODRAFT_271464 I 0.663
SELMODRAFT_445202 Selaginella moellendorffii SELMODRAFT_445202 I 0.663
PGSC0003DMG400021771 Solanum tuberosum PGSC0003DMG400021771 I 0.661
ARID6 Arabidopsis thaliana AT1G20910 D 0.659
Bra002058 Brassica rapa Bra002058 I 0.659
fgenesh2_kg.1__2281__AT1G20910.1 Arabidopsis lyrata fgenesh2_kg.1__2281__AT1G20910.1 I 0.659
OBART06G21220 Oryza barthii OBART06G21220 I 0.655
OGLUM06G22430 Oryza glumaepatula OGLUM06G22430 I 0.655
OLONG_022248 Oryza longistaminata OLONG_022248 I 0.655
OMERI01G31330 Oryza meridionalis OMERI01G31330 I 0.655
ONIVA06G25180 Oryza nivara ONIVA06G25180 I 0.655
ORUFI06G22870 Oryza rufipogon ORUFI06G22870 I 0.655
POPTR_0011s14850 Populus trichocarpa POPTR_0011s14850 I 0.649
SapurV1A.0047s0480 Salix purpurea SapurV1A.0047s0480 I 0.649
GSMUA_Achr4G19240_001 Musa acuminata GSMUA_Achr4G19240_001 I 0.637
e_gw1.66.61.1 Physcomitrella patens e_gw1.66.61.1 I 0.635
Solyc12g094730.1 Solanum lycopersicum Solyc12g094730.1 I 0.627
Bo7g061260 Brassica oleracea Bo7g061260 I 0.621
Bra012257 Brassica rapa Bra012257 I 0.621
POPTR_0001s46070 Populus trichocarpa POPTR_0001s46070 I 0.614
SapurV1A.0478s0090 Salix purpurea SapurV1A.0478s0090 I 0.614
gw1.131.40.1 Physcomitrella patens gw1.131.40.1 I 0.596
GLYMA05G10756 Glycine max GLYMA05G10756 I 0.593
Bo5g030830 Brassica oleracea Bo5g030830 I 0.586
Bo8g070520 Brassica oleracea Bo8g070520 I 0.586
Bra016443 Brassica rapa Bra016443 I 0.586
Bra025855 Brassica rapa Bra025855 I 0.586
GSMUA_Achr3G11660_001 Musa acuminata GSMUA_Achr3G11660_001 I 0.576
Bo7g014510 Brassica oleracea Bo7g014510 I 0.551
LPERR06G17780 Leersia perrieri LPERR06G17780 I 0.528
OPUNC06G19340 Oryza punctata OPUNC06G19340 I 0.515
cassava10018.m1 Manihot esculenta cassava10018.m1 I 0.488
gene12982-v1.0-hybrid Fragaria vesca gene12982-v1.0-hybrid I 0.471