CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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MDP0000198823
(
Malus domestica
)
ARID/BRIGHT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF01388 (ARID)
IPR001606
MDP0000198823
T016142_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
retn
M01664_2.00
Drosophila melanogaster
NDATHRNN
NNYDATHN
PBM
Weirauch et al.(2014)
pTH5119
0.440
0.342
retn
M03590_2.00
Drosophila melanogaster
NNATTRATHN
NDATYAATNN
SELEX
Nitta et al.(2015)
retn_1
0.440
0.342
retn
M05899_2.00
Drosophila melanogaster
AATYAAAM
KTTTRATT
B1H
Zhu et al.(2011)
retn_SANGER_5_FBgn0004795
0.440
0.342
retn
M09768_2.00
Drosophila melanogaster
NNRATTAADN
NHTTAATYNN
Transfac
Matys et al.(2006)
I$DRI_01
0.440
0.342
ACYPI009013
M01655_2.00
Acyrthosiphon pisum
NDATHAADN
NHTTDATHN
PBM
Weirauch et al.(2014)
pTH5117
0.440
0.316
For this family, TFs with SR scores >
0.422
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
MDP0000198823
ARID/BRIGHT
63
178
QLEACMDKNRKHERKFTFSRFGNGCCVVCCVVLDRDYCKGIRDKDGGSKFRIYTVGGKSLDLHLLFVEVTSRGGLDKVIRDHKWKAVIVAFKFPTTITSVSFVLRKYYLSLLYHFE
Links
Other
ARID/BRIGHT
family TFs
Other
Malus domestica
TFs
109 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
SapurV1A.0338s0260
Salix purpurea
SapurV1A.0338s0260
I
0.565
orange1.1g029808m.g
Citrus sinensis
orange1.1g029808m.g
I
0.541
Cla007529
Citrullus lanatus
Cla007529
I
0.482
Cla016376
Citrullus lanatus
Cla016376
I
0.480
Bostr.6758s0010
Boechera stricta
Bostr.6758s0010
N
0.479
MESCA007536
Megaselia scalaris
MESCA007536
I
0.477
H311_02283
Anncaliia algerae
H311_02283
I
0.472
orange1.1g020305m.g
Citrus sinensis
orange1.1g020305m.g
I
0.471
chr5.CM0260.670.nd
Lotus japonicus
chr5.CM0260.670.nd
N
0.468
ACEP22600
Atta cephalotes
ACEP22600
I
0.463
ACYPI34395
Acyrthosiphon pisum
ACYPI34395
I
0.463
BGIBMGA004104
Bombyx mori
BGIBMGA004104
I
0.463
HMEL016284
Heliconius melpomene
HMEL016284
I
0.463
L798_02230
Zootermopsis nevadensis
L798_02230
I
0.463
YQE_12654
Dendroctonus ponderosae
YQE_12654
I
0.463
Cflo_09201--XP_001121514.1_APIME
Camponotus floridanus
Cflo_09201--XP_001121514.1_APIME
I
0.463
Hsal_11119--XP_001121514.1_APIME
Harpegnathos saltator
Hsal_11119--XP_001121514.1_APIME
I
0.463
estExt_fgenesh1_pg.C_10228
Coccomyxa subellipsoidea C169
estExt_fgenesh1_pg.C_10228
I
0.463
LDEC015171
Leptinotarsa decemlineata
LDEC015171
I
0.463
GG.C169_S01_00460
Chlorella vulgaris
GG.C169_S01_00460
I
0.463
AATE005121
Anopheles atroparvus
AATE005121
I
0.463
AMEC012114
Anopheles melas
AMEC012114
I
0.463
ASIS004112
Anopheles sinensis
ASIS004112
I
0.463
CMM307C
Cyanidioschyzon merolae
CMM307C
I
0.458
ENSOANG00000010382
Ornithorhynchus anatinus
ENSOANG00000010382
I
0.452
MESCA001314
Megaselia scalaris
MESCA001314
I
0.449
ENSDNOG00000042496
Dasypus novemcinctus
ENSDNOG00000042496
I
0.444
Sjc_0028570
Schistosoma japonicum
Sjc_0028570
I
0.442
D915_07576
Fasciola hepatica
D915_07576
I
0.442
SCUD_0001335501
Schistosoma curassoni
SCUD_0001335501
I
0.442
TRE_0000223901
Trichobilharzia regenti
TRE_0000223901
I
0.442
MLOC_42821
Hordeum vulgare
MLOC_42821
I
0.441
ACYPI009013
Acyrthosiphon pisum
ACYPI009013
D
0.440
ACYPI34394
Acyrthosiphon pisum
ACYPI34394
I
0.440
AGAP005156
Anopheles gambiae
AGAP005156
I
0.440
DAPPUDRAFT_3993
Daphnia pulex
DAPPUDRAFT_3993
I
0.440
retn
Drosophila melanogaster
FBgn0004795
D
0.440
GA18855
Drosophila pseudoobscura
FBgn0078855
I
0.440
GF13069
Drosophila ananassae
FBgn0090102
I
0.440
GG22872
Drosophila erecta
FBgn0115029
I
0.440
GH20664
Drosophila grimshawi
FBgn0128127
I
0.440
GI19027
Drosophila mojavensis
FBgn0141766
I
0.440
GL16874
Drosophila persimilis
FBgn0154478
I
0.440
GM16032
Drosophila sechellia
FBgn0170948
I
0.440
GD11780
Drosophila simulans
FBgn0183519
I
0.440
GJ19993
Drosophila virilis
FBgn0207134
I
0.440
GK23065
Drosophila willistoni
FBgn0225027
I
0.440
GE14310
Drosophila yakuba
FBgn0231925
I
0.440
GB55596
Apis mellifera
GB55596
I
0.440
KGM_11440
Danaus plexippus
KGM_11440
I
0.440
NV17632
Nasonia vitripennis
NV17632
I
0.440
TC008720
Tribolium castaneum
TC008720
I
0.440
ACOM035192
Anopheles coluzzii
ACOM035192
I
0.440
AMEM013811
Anopheles merus
AMEM013811
I
0.440
MDOA006752
Musca domestica
MDOA006752
I
0.440
HHAL000963-PA
Halyomorpha halys
HHAL000963-PA
I
0.439
NEMVEDRAFT_v1g91926
Nematostella vectensis
NEMVEDRAFT_v1g91926
I
0.434
tetur09g05800
Tetranychus urticae
tetur09g05800
I
0.433
SNAPOd2T00025801001
Oikopleura dioica
SNAPOd2T00025801001
I
0.433
SSLN_0000532101
Schistocephalus solidus
SSLN_0000532101
I
0.433
ENSAMEG00000014585
Ailuropoda melanoleuca
ENSAMEG00000014585
I
0.429
ARID3C
Bos taurus
ENSBTAG00000025792
I
0.429
ARID3C
Canis familiaris
ENSCAFG00000024873
I
0.429
ARID3C
Choloepus hoffmanni
ENSCHOG00000011584
I
0.429
ARID3C
Callithrix jacchus
ENSCJAG00000008754
I
0.429
ARID3C
Cavia porcellus
ENSCPOG00000001541
I
0.429
ENSCSAG00000010149
Chlorocebus sabaeus
ENSCSAG00000010149
I
0.429
ARID3C
Dasypus novemcinctus
ENSDNOG00000030859
I
0.429
Arid3c
Dipodomys ordii
ENSDORG00000001723
I
0.429
ARID3C
Felis catus
ENSFCAG00000003156
I
0.429
ARID3C
Homo sapiens
ENSG00000205143
I
0.429
ARID3C
Gorilla gorilla
ENSGGOG00000002920
I
0.429
ARID3C
Loxodonta africana
ENSLAFG00000017911
I
0.429
ENSMICG00000002379
Microcebus murinus
ENSMICG00000002379
I
0.429
ARID3C
Macaca mulatta
ENSMMUG00000020786
I
0.429
ENSMPUG00000004275
Mustela putorius furo
ENSMPUG00000004275
I
0.429
Arid3c
Mus musculus
ENSMUSG00000066224
I
0.429
ENSNLEG00000004860
Nomascus leucogenys
ENSNLEG00000004860
I
0.429
ENSOARG00000009192
Ovis aries
ENSOARG00000009192
I
0.429
ARID3C
Oryctolagus cuniculus
ENSOCUG00000000361
I
0.429
ARID3C
Otolemur garnettii
ENSOGAG00000008253
I
0.429
ARID3C
Ochotona princeps
ENSOPRG00000009210
I
0.429
ENSPANG00000025316
Papio anubis
ENSPANG00000025316
I
0.429
ENSPPYG00000020014
Pongo abelii
ENSPPYG00000020014
I
0.429
ARID3C
Pan troglodytes
ENSPTRG00000029286
I
0.429
ARID3C
Pteropus vampyrus
ENSPVAG00000014819
I
0.429
Arid3c
Rattus norvegicus
ENSRNOG00000013416
I
0.429
ARID3C
Sus scrofa
ENSSSCG00000010971
I
0.429
ENSSTOG00000002820
Ictidomys tridecemlineatus
ENSSTOG00000002820
I
0.429
ARID3C
Tupaia belangeri
ENSTBEG00000004554
I
0.429
ARID3C
Tursiops truncatus
ENSTTRG00000005673
I
0.429
HelroG64754
Helobdella robusta
HelroG64754
I
0.429
ENSP00000368189
Macaca fascicularis
ENSP00000368189
I
0.429
HelroG126316
Helobdella robusta
HelroG126316
I
0.428
Ocbimv22026349m.g
Octopus bimaculoides
Ocbimv22026349m.g
I
0.428
CpipJ_CPIJ014252
Culex pipiens
CpipJ_CPIJ014252
I
0.427
CPIJ014252
Culex quinquefasciatus
CPIJ014252
I
0.427
SINV18993
Solenopsis invicta
SINV18993
I
0.427
LCUP005990
Lucilia cuprina
LCUP005990
I
0.427
AALB004881
Anopheles albimanus
AALB004881
I
0.427
ADIR001538
Anopheles dirus
ADIR001538
I
0.427
ADIR003833
Anopheles dirus
ADIR003833
I
0.427
AEPI010676
Anopheles epiroticus
AEPI010676
I
0.427
AFUN000671
Anopheles funestus
AFUN000671
I
0.427
AMIN007318
Anopheles minimus
AMIN007318
I
0.427
AQUA009961
Anopheles quadriannulatus
AQUA009961
I
0.427
ASTEI08266
Anopheles stephensi
ASTEI08266
I
0.427
PPAI000162
Phlebotomus papatasi
PPAI000162
I
0.427
EFA85631.1
Polysphondylium pallidum
EFA85631.1
I
0.424