Bo5g132600 (Brassica oleracea)
ARID/BRIGHT,Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF01388 (ARID)
PF00505 (HMG_box)
IPR001606
IPR000910
Bo5g132600 T017011_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HMGB10
M06700_2.00
Arabidopsis thaliana
TWATAA

TTATWA
Dap-seq
OMalley et al.(2016)
At3g13350_col_a
0.797 0.797
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo5g132600.1 ARID/BRIGHT 35 120
Bo5g132600.1 Sox 227 294

Links

Other ARID/BRIGHT,Sox family TFs
Other Brassica oleracea TFs

7 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bra034683 Brassica rapa Bra034683 I 0.993
HMGB10 Arabidopsis thaliana AT3G13350 D 0.792
Bostr.3640s0117 Boechera stricta Bostr.3640s0117 I 0.792
fgenesh2_kg.3__1419__AT3G13350.1 Arabidopsis lyrata fgenesh2_kg.3__1419__AT3G13350.1 I 0.779
Carubv10014108m.g Capsella rubella Carubv10014108m.g I 0.760
Cagra.0690s0033 Capsella grandiflora Cagra.0690s0033 I 0.760
Thhalv10021143m.g Eutrema salsugineum Thhalv10021143m.g I 0.716