CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

CPUR_05068 *(Claviceps purpurea)* AT hook
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF02178 (AT_hook)	IPR017956	CPUR_05068	T017329_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
NCU01145 M01693_2.00	Neurospora crassa	RWATAWWTNN	NNAWWTATWY	PBM Weirauch et al.(2014) pTH8916	0.991	0.559
athp-3 M01691_2.00	Caenorhabditis elegans	NNDDWDH	DHWHHNN	PBM Weirauch et al.(2014) pTH9097	0.991	0.492
HMG-I Y M02652_2.00	Pisum sativum	NDWVAAANRVMRWMAY	RTKWYKBYNTTTBWHN	SELEX Mathelier et al.(2014) MA0045.1	0.991	0.492
HMGA M01671_2.00	Arabidopsis thaliana	NNNNDWAWH	DWTWHNNNN	PBM Weirauch et al.(2014) pTH7395	0.991	0.441
ANIA_01690 M01675_2.00	Aspergillus nidulans	NNNNRHDDN	NHHDYNNNN	PBM Weirauch et al.(2014) pTH8216	0.991	0.407
Hmga2 M00751_2.00	Mus musculus	NNNNRHWWNN	NNWWDYNNNN	PBM Weirauch et al.(2013) pTH3046	0.991	0.407
ENSPPYG00000004736 M01685_2.00	Pongo abelii	NNNNDWWW	WWWHNNNN	PBM Weirauch et al.(2014) pTH9279	0.991	0.407
FGRRES_05233 M01104_2.00	Fusarium graminearum	NNNDWWAWWH	DWWTWWHNNN	PBM Lambert et al.(2019) pTH11377	0.991	0.407
HMGA2 M09771_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HMGA2_01	0.991	0.407
HMGA1 M09769_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HMGIY_01	0.991	0.356
HMGA1 M09770_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HMGIY_Q4	0.991	0.356
hmg-12 M01690_2.00	Caenorhabditis elegans	NNAWWTAWWTNN	NNAWWTAWWTNN	PBM Weirauch et al.(2014) pTH8997	0.991	0.333
TVAG_474020 M01106_2.00	Trichomonas vaginalis	DNWWWAWW	WWTWWWNH	PBM Lambert et al.(2019) pTH11493	0.991	0.271
NCU05635 M01694_2.00	Neurospora crassa	NNNWWWWNNN	NNNWWWWNNN	PBM Weirauch et al.(2014) pTH8863	0.991	0.271
FGRRES_17512 M01105_2.00	Fusarium graminearum	NNNDNWWWW	WWWWNHNNN	PBM Lambert et al.(2019) pTH11412	0.991	0.237
SUM1 M00008_2.00	Saccharomyces cerevisiae	NNDWWWH	DWWWHNN	PBM Badis et al.(2008) SUM1_2124	0.991	0.237
SUM1 M07439_2.00	Saccharomyces cerevisiae	DWAAATWWN	NWWATTTWH	PBM, CSA and or DIP-chip Mathelier et al.(2014) MA0398.1	0.991	0.237
SUM1 M08478_2.00	Saccharomyces cerevisiae	RYGWCASWAAW	WTTWSTGWCRY	Misc DeBoer et al.(2011) YDR310C_383	0.991	0.237
SUM1 M08479_2.00	Saccharomyces cerevisiae	DWAAATWWN	NWWATTTWH	Misc DeBoer et al.(2011) YDR310C_478	0.991	0.237
Q7DLU9_PEA M09772_2.00	Pisum sativum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$HMGIY_01	0.991	0.237
AHL13 M01672_2.00	Arabidopsis thaliana	NAWWTAWWWN	NWWWTAWWTN	PBM Weirauch et al.(2014) pTH8202	0.991	0.220
BRADI3G55950 M01673_2.00	Brachypodium distachyon	NNNNRHDDN	NHHDYNNNN	PBM Weirauch et al.(2014) pTH9369	0.991	0.220
OS02G0824300 M01688_2.00	Oryza sativa	NNDWAWWN	NWWTWHNN	PBM Weirauch et al.(2014) pTH8406	0.991	0.220
VIT_08s0007g04020 M01689_2.00	Vitis vinifera	DBNDDDDDDN	NHHHHHHNVH	PBM Weirauch et al.(2014) pTH9295	0.991	0.203
kmt2cb M01679_2.00	Danio rerio	WWAWAWAT	ATWTWTWW	PBM Weirauch et al.(2014) pTH7876	0.991	0.186
BRADI5G22430 M01674_2.00	Brachypodium distachyon	VNRDDDHDD	HHDHHHYNB	PBM Weirauch et al.(2014) pTH9242	0.991	0.153
PK26376.1 M01108_2.00	Cannabis sativa	DDWWWAWW	WWTWWWHH	PBM Lambert et al.(2019) pTH11261	0.991	0.153
Xrp1 M01686_2.00	Drosophila melanogaster	NNNNDWAWW	WWTWHNNNN	PBM Weirauch et al.(2014) pTH9260	0.991	0.136
Xrp1 M05900_2.00	Drosophila melanogaster	RTKRYGYAAT	ATTRCRYMAY	B1H Zhu et al.(2011) Xrp1_CG6272_SANGER_5_FBgn0261113	0.991	0.136
phf21ab M01678_2.00	Danio rerio	NNNDNADW	WHTNHNNN	PBM Weirauch et al.(2014) pTH9254	0.991	0.119
phf21ab M01680_2.00	Gasterosteus aculeatus	AAAAWAAA	TTTWTTTT	PBM Weirauch et al.(2014) pTH9180	0.991	0.119
Ahctf1 M00750_2.00	Mus musculus	AAAWAWAW	ATWTWTTT	PBM Weirauch et al.(2013) pTH2361	0.991	0.119
MTR_4g101990 M01687_2.00	Medicago truncatula	AAAWTAAT	ATTAWTTT	PBM Weirauch et al.(2014) pTH9209	0.991	0.119
estExt_fgeneshNG_pg.C_820014 M01692_2.00	Naegleria gruberi	NNNNNDRH	DYHNNNNN	PBM Weirauch et al.(2014) pTH9380	0.991	0.119
PK00377.1 M01107_2.00	Cannabis sativa	DAWWWAWW	WWTWWWTH	PBM Lambert et al.(2019) pTH11338	0.991	0.119
ATEG_07399 M01676_2.00	Aspergillus terreus	DHNNHNDWWW	WWWHNDNNDH	PBM Weirauch et al.(2014) pTH9237	0.991	0.102
ENSACAG00000014978 M01677_2.00	Anolis carolinensis	NNNNNDRH	DYHNNNNN	PBM Weirauch et al.(2014) pTH9222	0.991	0.102
PHF21A M01681_2.00	Meleagris gallopavo	HDNHNNDNHD	HDNHNNDNHD	PBM Weirauch et al.(2014) pTH7875	0.991	0.102
PHF21A M01103_2.00	Monodelphis domestica	NNNAWATWAATN	NATTWATWTNNN	PBM Lambert et al.(2019) pTH9309	0.991	0.102
PHF21A M01682_2.00	Monodelphis domestica	NNNNNHRH	DYDNNNNN	PBM Weirauch et al.(2014) pTH9335	0.991	0.102
Setbp1 M01683_2.00	Mus musculus	NDNNNNNNHN	NDNNNNNNHN	PBM Weirauch et al.(2014) pTH1294	0.991	0.102
Phf21a M01684_2.00	Mus musculus	NNNATATWAATN	NATTWATATNNN	PBM Weirauch et al.(2014) pTH8550	0.991	0.102
SUM1 M01517_2.00	Saccharomyces cerevisiae	NNNDWAWW	WWTWHNNN	PBM Zhu et al.(2009) Sum1	0.991	0.000
For this family, TFs with SR scores > 0.990* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
CCE31217	AT hook	649	659	KRPRGRPRKDS
CCE31217	AT hook	679	689	KRPRGRPRKDS
CCE31217	AT hook	709	721	KRPRGRPRKDSVS
CCE31217	AT hook	739	751	KRPRGRPRKDSVS
CCE31217	AT hook	769	779	KRPRGRPRKDS

Links
Other AT hook family TFs
Other *Claviceps purpurea* TFs

1072 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
Alligator_sinensis_CCG018454.1	Alligator sinensis	Alligator_sinensis_CCG018454.1	N
ANCCAN_13802	Ancylostoma caninum	ANCCAN_13802	N
ANCDUO_07508	Ancylostoma duodenale	ANCDUO_07508	N
AALB009198	Anopheles albimanus	AALB009198	N
AARA001756	Anopheles arabiensis	AARA001756	N
ADIR009951	Anopheles dirus	ADIR009951	N
AEPI009631	Anopheles epiroticus	AEPI009631	N
AMAM021135	Anopheles maculatus	AMAM021135	N
ASTEI05791	Anopheles stephensi	ASTEI05791	N
ACEP13417	Atta cephalotes	ACEP13417	N
BTMF_0001537801	Brugia timori	BTMF_0001537801	N
ENSCPOG00000025550	Cavia porcellus	ENSCPOG00000025550	N
CLEC011939	Cimex lectularius	CLEC011939	N
YQE_06158	Dendroctonus ponderosae	YQE_06158	N
nDi.2.2.2.g11925	Dirofilaria immitis	nDi.2.2.2.g11925	N
ECPE_0000807901	Echinostoma caproni	ECPE_0000807901	N
Gfo_R008500	Geospiza fortis	Gfo_R008500	N
ZIC4	Homo sapiens	ENSG00000174963	D
ZIC1	Homo sapiens	ENSG00000152977	D
ENSSTOG00000027399	Ictidomys tridecemlineatus	ENSSTOG00000027399	I
ENSLACG00000015786	Latimeria chalumnae	ENSLACG00000015786	N
LDEC018872	Leptinotarsa decemlineata	LDEC018872	N
ZIC5	Loxodonta africana	ENSLAFG00000009640	N
LCUP010714	Lucilia cuprina	LCUP010714	N
ZIC3	Macaca mulatta	ENSMMUG00000002023	N
ENSMEUG00000007408	Macropus eugenii	ENSMEUG00000007408	N
MESCA007328	Megaselia scalaris	MESCA007328	N
ENSMPUG00000011382	Mustela putorius furo	ENSMPUG00000011382	N
Myotis_brandtii_Zic5_10007324	Myotis brandtii	Myotis_brandtii_Zic5_10007324	N
ENSMLUG00000027631	Myotis lucifugus	ENSMLUG00000027631	N
Ocbimv22019249m.g	Octopus bimaculoides	Ocbimv22019249m.g	N
OFLC_0000964601	Onchocerca flexuosa	OFLC_0000964601	N
ZIC5	Otolemur garnettii	ENSOGAG00000024269	N
PPAI004317	Phlebotomus papatasi	PPAI004317	N
ENSSHAG00000004201	Sarcophilus harrisii	ENSSHAG00000004201	N
SMAR010285	Strigamia maritima	SMAR010285	N
TELCIR_23243	Teladorsagia circumcincta	TELCIR_23243	N
ENSTNIG00000017808	Tetraodon nigroviridis	ENSTNIG00000017808	N
D917_03218	Trichinella nativa	D917_03218	N
TRE_0000458501	Trichobilharzia regenti	TRE_0000458501	N
WUBG_07674	Wuchereria bancrofti	WUBG_07674	N
ENSXMAG00000013401	Xiphophorus maculatus	ENSXMAG00000013401	N

CPUR_05068 (Claviceps purpurea) AT hook

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1072 Related TFs

CPUR_05068 **(Claviceps purpurea)
AT hook**