CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

SCLCIDRAFT_1217487 *(Scleroderma citrinum)* AT hook
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF02178 (AT_hook)	IPR017956	SCLCIDRAFT_1217487	T017792_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
MTR_4g101990 M01687_2.00	Medicago truncatula	AAAWTAAT	ATTAWTTT	PBM Weirauch et al.(2014) pTH9209	0.991	0.692
PK00377.1 M01107_2.00	Cannabis sativa	DAWWWAWW	WWTWWWTH	PBM Lambert et al.(2019) pTH11338	0.991	0.692
BRADI5G22430 M01674_2.00	Brachypodium distachyon	VNRDDDHDD	HHDHHHYNB	PBM Weirauch et al.(2014) pTH9242	0.991	0.538
ATEG_07399 M01676_2.00	Aspergillus terreus	DHNNHNDWWW	WWWHNDNNDH	PBM Weirauch et al.(2014) pTH9237	0.991	0.538
ENSACAG00000014978 M01677_2.00	Anolis carolinensis	NNNNNDRH	DYHNNNNN	PBM Weirauch et al.(2014) pTH9222	0.991	0.538
phf21ab M01678_2.00	Danio rerio	NNNDNADW	WHTNHNNN	PBM Weirauch et al.(2014) pTH9254	0.991	0.538
phf21ab M01680_2.00	Gasterosteus aculeatus	AAAAWAAA	TTTWTTTT	PBM Weirauch et al.(2014) pTH9180	0.991	0.538
PHF21A M01681_2.00	Meleagris gallopavo	HDNHNNDNHD	HDNHNNDNHD	PBM Weirauch et al.(2014) pTH7875	0.991	0.538
PHF21A M01103_2.00	Monodelphis domestica	NNNAWATWAATN	NATTWATWTNNN	PBM Lambert et al.(2019) pTH9309	0.991	0.538
PHF21A M01682_2.00	Monodelphis domestica	NNNNNHRH	DYDNNNNN	PBM Weirauch et al.(2014) pTH9335	0.991	0.538
Setbp1 M01683_2.00	Mus musculus	NDNNNNNNHN	NDNNNNNNHN	PBM Weirauch et al.(2014) pTH1294	0.991	0.538
Ahctf1 M00750_2.00	Mus musculus	AAAWAWAW	ATWTWTTT	PBM Weirauch et al.(2013) pTH2361	0.991	0.538
Phf21a M01684_2.00	Mus musculus	NNNATATWAATN	NATTWATATNNN	PBM Weirauch et al.(2014) pTH8550	0.991	0.538
Xrp1 M01686_2.00	Drosophila melanogaster	NNNNDWAWW	WWTWHNNNN	PBM Weirauch et al.(2014) pTH9260	0.991	0.538
PK26376.1 M01108_2.00	Cannabis sativa	DDWWWAWW	WWTWWWHH	PBM Lambert et al.(2019) pTH11261	0.991	0.538
Xrp1 M05900_2.00	Drosophila melanogaster	RTKRYGYAAT	ATTRCRYMAY	B1H Zhu et al.(2011) Xrp1_CG6272_SANGER_5_FBgn0261113	0.991	0.538
kmt2cb M01679_2.00	Danio rerio	WWAWAWAT	ATWTWTWW	PBM Weirauch et al.(2014) pTH7876	0.991	0.462
estExt_fgeneshNG_pg.C_820014 M01692_2.00	Naegleria gruberi	NNNNNDRH	DYHNNNNN	PBM Weirauch et al.(2014) pTH9380	0.991	0.462
FGRRES_17512 M01105_2.00	Fusarium graminearum	NNNDNWWWW	WWWWNHNNN	PBM Lambert et al.(2019) pTH11412	0.991	0.360
VIT_08s0007g04020 M01689_2.00	Vitis vinifera	DBNDDDDDDN	NHHHHHHNVH	PBM Weirauch et al.(2014) pTH9295	0.991	0.360
AHL13 M01672_2.00	Arabidopsis thaliana	NAWWTAWWWN	NWWWTAWWTN	PBM Weirauch et al.(2014) pTH8202	0.991	0.346
BRADI3G55950 M01673_2.00	Brachypodium distachyon	NNNNRHDDN	NHHDYNNNN	PBM Weirauch et al.(2014) pTH9369	0.991	0.346
OS02G0824300 M01688_2.00	Oryza sativa	NNDWAWWN	NWWTWHNN	PBM Weirauch et al.(2014) pTH8406	0.991	0.346
TVAG_474020 M01106_2.00	Trichomonas vaginalis	DNWWWAWW	WWTWWWNH	PBM Lambert et al.(2019) pTH11493	0.991	0.308
SUM1 M00008_2.00	Saccharomyces cerevisiae	NNDWWWH	DWWWHNN	PBM Badis et al.(2008) SUM1_2124	0.991	0.250
SUM1 M07439_2.00	Saccharomyces cerevisiae	DWAAATWWN	NWWATTTWH	PBM, CSA and or DIP-chip Mathelier et al.(2014) MA0398.1	0.991	0.231
SUM1 M08478_2.00	Saccharomyces cerevisiae	RYGWCASWAAW	WTTWSTGWCRY	Misc DeBoer et al.(2011) YDR310C_383	0.991	0.231
SUM1 M08479_2.00	Saccharomyces cerevisiae	DWAAATWWN	NWWATTTWH	Misc DeBoer et al.(2011) YDR310C_478	0.991	0.231
NCU05635 M01694_2.00	Neurospora crassa	NNNWWWWNNN	NNNWWWWNNN	PBM Weirauch et al.(2014) pTH8863	0.991	0.211
Q7DLU9_PEA M09772_2.00	Pisum sativum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$HMGIY_01	0.991	0.192
ANIA_01690 M01675_2.00	Aspergillus nidulans	NNNNRHDDN	NHHDYNNNN	PBM Weirauch et al.(2014) pTH8216	0.991	0.189
ENSPPYG00000004736 M01685_2.00	Pongo abelii	NNNNDWWW	WWWHNNNN	PBM Weirauch et al.(2014) pTH9279	0.991	0.158
Hmga2 M00751_2.00	Mus musculus	NNNNRHWWNN	NNWWDYNNNN	PBM Weirauch et al.(2013) pTH3046	0.991	0.154
HMGA2 M09771_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HMGA2_01	0.991	0.154
HMGA1 M09769_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HMGIY_01	0.991	0.154
HMGA1 M09770_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HMGIY_Q4	0.991	0.154
NCU01145 M01693_2.00	Neurospora crassa	RWATAWWTNN	NNAWWTATWY	PBM Weirauch et al.(2014) pTH8916	0.991	0.129
FGRRES_05233 M01104_2.00	Fusarium graminearum	NNNDWWAWWH	DWWTWWHNNN	PBM Lambert et al.(2019) pTH11377	0.991	0.128
hmg-12 M01690_2.00	Caenorhabditis elegans	NNAWWTAWWTNN	NNAWWTAWWTNN	PBM Weirauch et al.(2014) pTH8997	0.991	0.099
athp-3 M01691_2.00	Caenorhabditis elegans	NNDDWDH	DHWHHNN	PBM Weirauch et al.(2014) pTH9097	0.991	0.097
HMGA M01671_2.00	Arabidopsis thaliana	NNNNDWAWH	DWTWHNNNN	PBM Weirauch et al.(2014) pTH7395	0.991	0.096
HMG-I Y M02652_2.00	Pisum sativum	NDWVAAANRVMRWMAY	RTKWYKBYNTTTBWHN	SELEX Mathelier et al.(2014) MA0045.1	0.991	0.096
SUM1 M01517_2.00	Saccharomyces cerevisiae	NNNDWAWW	WWTWHNNN	PBM Zhu et al.(2009) Sum1	0.991	0.000
For this family, TFs with SR scores > 0.990* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
KIM59711	AT hook	169	181	TKKRGRPRKSGVD

Links
Other AT hook family TFs
Other *Scleroderma citrinum* TFs

1072 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
F775_32546	Aegilops tauschii	F775_32546	N
Aquca_108_00051	Aquilegia coerulea	Aquca_108_00051	N
Bo1g147290	Brassica oleracea	Bo1g147290	N
Bo3g061340	Brassica oleracea	Bo3g061340	N
Bra001258	Brassica rapa	Bra001258	N
Bra029658	Brassica rapa	Bra029658	N
Bra040015	Brassica rapa	Bra040015	N
Cla012999	Citrullus lanatus	Cla012999	N
Ciclev10021850m.g	Citrus clementina	Ciclev10021850m.g	N
Ciclev10016354m.g	Citrus clementina	Ciclev10016354m.g	N
orange1.1g025458m.g	Citrus sinensis	orange1.1g025458m.g	N
orange1.1g024388m.g	Citrus sinensis	orange1.1g024388m.g	N
Thhalv10021333m.g	Eutrema salsugineum	Thhalv10021333m.g	N
Gorai.004G060500	Gossypium raimondii	Gorai.004G060500	N
Gorai.007G162200	Gossypium raimondii	Gorai.007G162200	N
Gorai.N001000	Gossypium raimondii	Gorai.N001000	N
Gorai.011G138900	Gossypium raimondii	Gorai.011G138900	N
LPERR04G13890	Leersia perrieri	LPERR04G13890	N
Lus10027045.g	Linum usitatissimum	Lus10027045.g	N
Lus10025582.g	Linum usitatissimum	Lus10025582.g	N
Lus10025581.g	Linum usitatissimum	Lus10025581.g	N
cassava24109.valid.m1	Manihot esculenta	cassava24109.valid.m1	N
mgf025428m	Mimulus guttatus	mgf025428m	N
GSMUA_Achr3G19260_001	Musa acuminata	GSMUA_Achr3G19260_001	N
GSMUA_Achr6G28720_001	Musa acuminata	GSMUA_Achr6G28720_001	N
GSMUA_Achr9G08210_001	Musa acuminata	GSMUA_Achr9G08210_001	N
OBART04G17310	Oryza barthii	OBART04G17310	N
ORGLA04G0144300	Oryza glaberrima	ORGLA04G0144300	N
OGLUM04G17350	Oryza glumaepatula	OGLUM04G17350	N
BGIOSGA014805	Oryza indica	BGIOSGA014805	N
OLONG_009317	Oryza longistaminata	OLONG_009317	N
OMERI04G14610	Oryza meridionalis	OMERI04G14610	N
ONIVA04G15620	Oryza nivara	ONIVA04G15620	N
OPUNC04G15120	Oryza punctata	OPUNC04G15120	N
ORUFI04G18740	Oryza rufipogon	ORUFI04G18740	N
Pavir.J08977	Panicum virgatum	Pavir.J08977	N
Pavir.Ga01503	Panicum virgatum	Pavir.Ga01503	N
POPTR_0014s17210	Populus trichocarpa	POPTR_0014s17210	N
30005.m001261	Ricinus communis	30005.m001261	N
Si010917m.g	Setaria italica	Si010917m.g	N
TCM_002550	Theobroma cacao	TCM_002550	N
TCM_019960	Theobroma cacao	TCM_019960	N
TCM_019968	Theobroma cacao	TCM_019968	N
Traes_2AL_6990211D0	Triticum aestivum	Traes_2AL_6990211D0	N
Traes_2BL_7B5109B55	Triticum aestivum	Traes_2BL_7B5109B55	N
Traes_2DL_B72450387	Triticum aestivum	Traes_2DL_B72450387	N
GRMZM2G053557	Zea mays	GRMZM2G053557	N

SCLCIDRAFT_1217487 (Scleroderma citrinum) AT hook

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1072 Related TFs

SCLCIDRAFT_1217487 **(Scleroderma citrinum)
AT hook**