CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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cassava13539.valid.m1
(
Manihot esculenta
)
AT hook
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02178 (AT_hook)
IPR017956
cassava13539.valid.m1
T017937_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
HMGA
M01671_2.00
Arabidopsis thaliana
NNNNDWAWH
DWTWHNNNN
PBM
Weirauch et al.(2014)
pTH7395
0.991
0.808
HMG-I Y
M02652_2.00
Pisum sativum
NDWVAAANRVMRWMAY
RTKWYKBYNTTTBWHN
SELEX
Mathelier et al.(2014)
MA0045.1
0.991
0.712
NCU01145
M01693_2.00
Neurospora crassa
RWATAWWTNN
NNAWWTATWY
PBM
Weirauch et al.(2014)
pTH8916
0.991
0.452
Hmga2
M00751_2.00
Mus musculus
NNNNRHWWNN
NNWWDYNNNN
PBM
Weirauch et al.(2013)
pTH3046
0.991
0.423
ENSPPYG00000004736
M01685_2.00
Pongo abelii
NNNNDWWW
WWWHNNNN
PBM
Weirauch et al.(2014)
pTH9279
0.991
0.423
FGRRES_05233
M01104_2.00
Fusarium graminearum
NNNDWWAWWH
DWWTWWHNNN
PBM
Lambert et al.(2019)
pTH11377
0.991
0.423
HMGA2
M09771_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HMGA2_01
0.991
0.423
HMGA1
M09769_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HMGIY_01
0.991
0.404
HMGA1
M09770_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HMGIY_Q4
0.991
0.404
ANIA_01690
M01675_2.00
Aspergillus nidulans
NNNNRHDDN
NHHDYNNNN
PBM
Weirauch et al.(2014)
pTH8216
0.991
0.385
athp-3
M01691_2.00
Caenorhabditis elegans
NNDDWDH
DHWHHNN
PBM
Weirauch et al.(2014)
pTH9097
0.991
0.371
NCU05635
M01694_2.00
Neurospora crassa
NNNWWWWNNN
NNNWWWWNNN
PBM
Weirauch et al.(2014)
pTH8863
0.991
0.365
Q7DLU9_PEA
M09772_2.00
Pisum sativum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$HMGIY_01
0.991
0.346
hmg-12
M01690_2.00
Caenorhabditis elegans
NNAWWTAWWTNN
NNAWWTAWWTNN
PBM
Weirauch et al.(2014)
pTH8997
0.991
0.284
BRADI3G55950
M01673_2.00
Brachypodium distachyon
NNNNRHDDN
NHHDYNNNN
PBM
Weirauch et al.(2014)
pTH9369
0.991
0.269
OS02G0824300
M01688_2.00
Oryza sativa
NNDWAWWN
NWWTWHNN
PBM
Weirauch et al.(2014)
pTH8406
0.991
0.269
FGRRES_17512
M01105_2.00
Fusarium graminearum
NNNDNWWWW
WWWWNHNNN
PBM
Lambert et al.(2019)
pTH11412
0.991
0.250
VIT_08s0007g04020
M01689_2.00
Vitis vinifera
DBNDDDDDDN
NHHHHHHNVH
PBM
Weirauch et al.(2014)
pTH9295
0.991
0.250
SUM1
M00008_2.00
Saccharomyces cerevisiae
NNDWWWH
DWWWHNN
PBM
Badis et al.(2008)
SUM1_2124
0.991
0.250
TVAG_474020
M01106_2.00
Trichomonas vaginalis
DNWWWAWW
WWTWWWNH
PBM
Lambert et al.(2019)
pTH11493
0.991
0.250
SUM1
M07439_2.00
Saccharomyces cerevisiae
DWAAATWWN
NWWATTTWH
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0398.1
0.991
0.250
SUM1
M08478_2.00
Saccharomyces cerevisiae
RYGWCASWAAW
WTTWSTGWCRY
Misc
DeBoer et al.(2011)
YDR310C_383
0.991
0.250
SUM1
M08479_2.00
Saccharomyces cerevisiae
DWAAATWWN
NWWATTTWH
Misc
DeBoer et al.(2011)
YDR310C_478
0.991
0.250
AHL13
M01672_2.00
Arabidopsis thaliana
NAWWTAWWWN
NWWWTAWWTN
PBM
Weirauch et al.(2014)
pTH8202
0.991
0.231
ATEG_07399
M01676_2.00
Aspergillus terreus
DHNNHNDWWW
WWWHNDNNDH
PBM
Weirauch et al.(2014)
pTH9237
0.991
0.154
ENSACAG00000014978
M01677_2.00
Anolis carolinensis
NNNNNDRH
DYHNNNNN
PBM
Weirauch et al.(2014)
pTH9222
0.991
0.154
phf21ab
M01678_2.00
Danio rerio
NNNDNADW
WHTNHNNN
PBM
Weirauch et al.(2014)
pTH9254
0.991
0.154
PHF21A
M01681_2.00
Meleagris gallopavo
HDNHNNDNHD
HDNHNNDNHD
PBM
Weirauch et al.(2014)
pTH7875
0.991
0.154
Ahctf1
M00750_2.00
Mus musculus
AAAWAWAW
ATWTWTTT
PBM
Weirauch et al.(2013)
pTH2361
0.991
0.154
BRADI5G22430
M01674_2.00
Brachypodium distachyon
VNRDDDHDD
HHDHHHYNB
PBM
Weirauch et al.(2014)
pTH9242
0.991
0.135
kmt2cb
M01679_2.00
Danio rerio
WWAWAWAT
ATWTWTWW
PBM
Weirauch et al.(2014)
pTH7876
0.991
0.135
phf21ab
M01680_2.00
Gasterosteus aculeatus
AAAAWAAA
TTTWTTTT
PBM
Weirauch et al.(2014)
pTH9180
0.991
0.135
PHF21A
M01103_2.00
Monodelphis domestica
NNNAWATWAATN
NATTWATWTNNN
PBM
Lambert et al.(2019)
pTH9309
0.991
0.135
PHF21A
M01682_2.00
Monodelphis domestica
NNNNNHRH
DYDNNNNN
PBM
Weirauch et al.(2014)
pTH9335
0.991
0.135
Phf21a
M01684_2.00
Mus musculus
NNNATATWAATN
NATTWATATNNN
PBM
Weirauch et al.(2014)
pTH8550
0.991
0.135
Xrp1
M01686_2.00
Drosophila melanogaster
NNNNDWAWW
WWTWHNNNN
PBM
Weirauch et al.(2014)
pTH9260
0.991
0.135
estExt_fgeneshNG_pg.C_820014
M01692_2.00
Naegleria gruberi
NNNNNDRH
DYHNNNNN
PBM
Weirauch et al.(2014)
pTH9380
0.991
0.135
PK26376.1
M01108_2.00
Cannabis sativa
DDWWWAWW
WWTWWWHH
PBM
Lambert et al.(2019)
pTH11261
0.991
0.135
Xrp1
M05900_2.00
Drosophila melanogaster
RTKRYGYAAT
ATTRCRYMAY
B1H
Zhu et al.(2011)
Xrp1_CG6272_SANGER_5_FBgn0261113
0.991
0.135
Setbp1
M01683_2.00
Mus musculus
NDNNNNNNHN
NDNNNNNNHN
PBM
Weirauch et al.(2014)
pTH1294
0.991
0.115
MTR_4g101990
M01687_2.00
Medicago truncatula
AAAWTAAT
ATTAWTTT
PBM
Weirauch et al.(2014)
pTH9209
0.991
0.115
PK00377.1
M01107_2.00
Cannabis sativa
DAWWWAWW
WWTWWWTH
PBM
Lambert et al.(2019)
pTH11338
0.991
0.115
SUM1
M01517_2.00
Saccharomyces cerevisiae
NNNDWAWW
WWTWHNNN
PBM
Zhu et al.(2009)
Sum1
0.991
0.019
For this family, TFs with SR scores >
0.990
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
cassava13539.valid.m1
AT hook
109
121
KRGRGRPPKPKEM
cassava13539.valid.m1
AT hook
131
143
PRPRGRPPKPKDP
cassava13539.valid.m1
AT hook
159
171
GRPRGRPPKAKTA
cassava13539.valid.m1
AT hook
186
198
KRGRGRPPKVKPA
Links
Other
AT hook
family TFs
Other
Manihot esculenta
TFs
1072 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy