cassava6242.valid.m1 (Manihot esculenta)
AT hook

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02178 (AT_hook) IPR017956 cassava6242.valid.m1 T017943_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMG-I Y
M02652_2.00 		Pisum sativum
NDWVAAANRVMRWMAY
RTKWYKBYNTTTBWHN		 SELEX
Mathelier et al.(2014)
MA0045.1 		0.991 0.827
HMGA
M01671_2.00 		Arabidopsis thaliana
NNNNDWAWH
DWTWHNNNN		 PBM
Weirauch et al.(2014)
pTH7395 		0.991 0.654
NCU01145
M01693_2.00 		Neurospora crassa
RWATAWWTNN
NNAWWTATWY		 PBM
Weirauch et al.(2014)
pTH8916 		0.991 0.435
ENSPPYG00000004736
M01685_2.00 		Pongo abelii
NNNNDWWW
WWWHNNNN		 PBM
Weirauch et al.(2014)
pTH9279 		0.991 0.423
Hmga2
M00751_2.00 		Mus musculus
NNNNRHWWNN
NNWWDYNNNN		 PBM
Weirauch et al.(2013)
pTH3046 		0.991 0.404
Q7DLU9_PEA
M09772_2.00 		Pisum sativum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HMGIY_01 		0.991 0.404
HMGA2
M09771_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HMGA2_01 		0.991 0.404
HMGA1
M09769_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HMGIY_01 		0.991 0.404
HMGA1
M09770_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HMGIY_Q4 		0.991 0.404
ANIA_01690
M01675_2.00 		Aspergillus nidulans
NNNNRHDDN
NHHDYNNNN		 PBM
Weirauch et al.(2014)
pTH8216 		0.991 0.385
FGRRES_05233
M01104_2.00 		Fusarium graminearum
NNNDWWAWWH
DWWTWWHNNN		 PBM
Lambert et al.(2019)
pTH11377 		0.991 0.365
athp-3
M01691_2.00 		Caenorhabditis elegans
NNDDWDH
DHWHHNN		 PBM
Weirauch et al.(2014)
pTH9097 		0.991 0.355
NCU05635
M01694_2.00 		Neurospora crassa
NNNWWWWNNN
NNNWWWWNNN		 PBM
Weirauch et al.(2014)
pTH8863 		0.991 0.327
hmg-12
M01690_2.00 		Caenorhabditis elegans
NNAWWTAWWTNN
NNAWWTAWWTNN		 PBM
Weirauch et al.(2014)
pTH8997 		0.991 0.272
AHL13
M01672_2.00 		Arabidopsis thaliana
NAWWTAWWWN
NWWWTAWWTN		 PBM
Weirauch et al.(2014)
pTH8202 		0.991 0.269
FGRRES_17512
M01105_2.00 		Fusarium graminearum
NNNDNWWWW
WWWWNHNNN		 PBM
Lambert et al.(2019)
pTH11412 		0.991 0.269
TVAG_474020
M01106_2.00 		Trichomonas vaginalis
DNWWWAWW
WWTWWWNH		 PBM
Lambert et al.(2019)
pTH11493 		0.991 0.269
BRADI3G55950
M01673_2.00 		Brachypodium distachyon
NNNNRHDDN
NHHDYNNNN		 PBM
Weirauch et al.(2014)
pTH9369 		0.991 0.250
OS02G0824300
M01688_2.00 		Oryza sativa
NNDWAWWN
NWWTWHNN		 PBM
Weirauch et al.(2014)
pTH8406 		0.991 0.250
VIT_08s0007g04020
M01689_2.00 		Vitis vinifera
DBNDDDDDDN
NHHHHHHNVH		 PBM
Weirauch et al.(2014)
pTH9295 		0.991 0.250
SUM1
M00008_2.00 		Saccharomyces cerevisiae
NNDWWWH
DWWWHNN		 PBM
Badis et al.(2008)
SUM1_2124 		0.991 0.250
SUM1
M07439_2.00 		Saccharomyces cerevisiae
DWAAATWWN
NWWATTTWH		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0398.1 		0.991 0.250
SUM1
M08478_2.00 		Saccharomyces cerevisiae
RYGWCASWAAW
WTTWSTGWCRY		 Misc
DeBoer et al.(2011)
YDR310C_383 		0.991 0.250
SUM1
M08479_2.00 		Saccharomyces cerevisiae
DWAAATWWN
NWWATTTWH		 Misc
DeBoer et al.(2011)
YDR310C_478 		0.991 0.250
ATEG_07399
M01676_2.00 		Aspergillus terreus
DHNNHNDWWW
WWWHNDNNDH		 PBM
Weirauch et al.(2014)
pTH9237 		0.991 0.154
kmt2cb
M01679_2.00 		Danio rerio
WWAWAWAT
ATWTWTWW		 PBM
Weirauch et al.(2014)
pTH7876 		0.991 0.154
Ahctf1
M00750_2.00 		Mus musculus
AAAWAWAW
ATWTWTTT		 PBM
Weirauch et al.(2013)
pTH2361 		0.991 0.154
MTR_4g101990
M01687_2.00 		Medicago truncatula
AAAWTAAT
ATTAWTTT		 PBM
Weirauch et al.(2014)
pTH9209 		0.991 0.154
estExt_fgeneshNG_pg.C_820014
M01692_2.00 		Naegleria gruberi
NNNNNDRH
DYHNNNNN		 PBM
Weirauch et al.(2014)
pTH9380 		0.991 0.154
ENSACAG00000014978
M01677_2.00 		Anolis carolinensis
NNNNNDRH
DYHNNNNN		 PBM
Weirauch et al.(2014)
pTH9222 		0.991 0.135
phf21ab
M01678_2.00 		Danio rerio
NNNDNADW
WHTNHNNN		 PBM
Weirauch et al.(2014)
pTH9254 		0.991 0.135
phf21ab
M01680_2.00 		Gasterosteus aculeatus
AAAAWAAA
TTTWTTTT		 PBM
Weirauch et al.(2014)
pTH9180 		0.991 0.135
PHF21A
M01681_2.00 		Meleagris gallopavo
HDNHNNDNHD
HDNHNNDNHD		 PBM
Weirauch et al.(2014)
pTH7875 		0.991 0.135
PHF21A
M01103_2.00 		Monodelphis domestica
NNNAWATWAATN
NATTWATWTNNN		 PBM
Lambert et al.(2019)
pTH9309 		0.991 0.135
PHF21A
M01682_2.00 		Monodelphis domestica
NNNNNHRH
DYDNNNNN		 PBM
Weirauch et al.(2014)
pTH9335 		0.991 0.135
Phf21a
M01684_2.00 		Mus musculus
NNNATATWAATN
NATTWATATNNN		 PBM
Weirauch et al.(2014)
pTH8550 		0.991 0.135
Xrp1
M01686_2.00 		Drosophila melanogaster
NNNNDWAWW
WWTWHNNNN		 PBM
Weirauch et al.(2014)
pTH9260 		0.991 0.135
PK00377.1
M01107_2.00 		Cannabis sativa
DAWWWAWW
WWTWWWTH		 PBM
Lambert et al.(2019)
pTH11338 		0.991 0.135
PK26376.1
M01108_2.00 		Cannabis sativa
DDWWWAWW
WWTWWWHH		 PBM
Lambert et al.(2019)
pTH11261 		0.991 0.135
Xrp1
M05900_2.00 		Drosophila melanogaster
RTKRYGYAAT
ATTRCRYMAY		 B1H
Zhu et al.(2011)
Xrp1_CG6272_SANGER_5_FBgn0261113 		0.991 0.135
BRADI5G22430
M01674_2.00 		Brachypodium distachyon
VNRDDDHDD
HHDHHHYNB		 PBM
Weirauch et al.(2014)
pTH9242 		0.991 0.115
Setbp1
M01683_2.00 		Mus musculus
NDNNNNNNHN
NDNNNNNNHN		 PBM
Weirauch et al.(2014)
pTH1294 		0.991 0.115
SUM1
M01517_2.00 		Saccharomyces cerevisiae
NNNDWAWW
WWTWHNNN		 PBM
Zhu et al.(2009)
Sum1 		0.991 0.019
For this family, TFs with SR scores > 0.990 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava6242.valid.m1 AT hook 69 81
cassava6242.valid.m1 AT hook 91 103
cassava6242.valid.m1 AT hook 120 132
cassava6242.valid.m1 AT hook 152 164

Links

Other AT hook family TFs
Other Manihot esculenta TFs

1072 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O1_00584 Capronia coronata A1O1_00584 N
A1O5_03686 Cladophialophora psammophila A1O5_03686 N
A1O7_00496 Cladophialophora yegresii A1O7_00496 N
A1O9_04841 Exophiala aquamarina A1O9_04841 N
BAUCODRAFT_119676 Baudoinia compniacensis BAUCODRAFT_119676 N
Bcin06g06250 Botrytis cinerea Bcin06g06250 N
CFIO01_01363 Colletotrichum fioriniae CFIO01_01363 N
CGGC5_13848 Colletotrichum gloeosporioides CGGC5_13848 N
CH063_09851 Colletotrichum higginsianum CH063_09851 N
CHGG_01491 Chaetomium globosum CHGG_01491 N
CIMG_01069 Coccidioides immitis CIMG_01069 N
Cob_08011 Colletotrichum orbiculare Cob_08011 N
COCCADRAFT_35218 Bipolaris zeicola COCCADRAFT_35218 N
COCSADRAFT_109777 Bipolaris sorokiniana COCSADRAFT_109777 N
CPC735_052920 Coccidioides posadasii CPC735_052920 N
CSUB01_03526 Colletotrichum sublineola CSUB01_03526 N
DOTSEDRAFT_74979 Dothistroma septosporum DOTSEDRAFT_74979 N
EPUS_07706 Endocarpon pusillum EPUS_07706 N
e_gw1.11.76.1 Mycosphaerella graminicola e_gw1.11.76.1 N
fgenesh1_pg.C_scaffold_4000277 Cryphonectria parasitica fgenesh1_pg.C_scaffold_4000277 N
G647_00537 Cladophialophora carrionii G647_00537 N
GGTG_01539 Gaeumannomyces graminis GGTG_01539 N
GLRG_04468 Colletotrichum graminicola GLRG_04468 N
gw1.6.17.1 Mycosphaerella fijiensis gw1.6.17.1 N
HMPREF1120_06189 Exophiala dermatitidis HMPREF1120_06189 N
HMPREF1541_05902 Cyphellophora europaea HMPREF1541_05902 N
LEMA_P096450.1 Leptosphaeria maculans LEMA_P096450.1 N
MBM_04902 Marssonina brunnea MBM_04902 N
MGG_01624 Magnaporthe oryzae MGG_01624 N
MYCFIDRAFT_115419 Pseudocercospora fijiensis MYCFIDRAFT_115419 N
Mycgr3G49868 Zymoseptoria tritici Mycgr3G49868 N
MYCTH_98955 Myceliophthora thermophila MYCTH_98955 N
PAAG_11207 Paracoccidioides sp lutzii PAAG_11207 N
PABG_01676 Paracoccidioides brasiliensis PABG_01676 N
PMAA_029710 Talaromyces marneffei PMAA_029710 N
PMAA_029710 Penicillium marneffei PMAA_029710 N
PTRG_06263 Pyrenophora triticirepentis PTRG_06263 N
PV04_01563 Capronia semiimmersa PV04_01563 N
PV05_11133 Exophiala xenobiotica PV05_11133 N
PV06_03594 Exophiala oligosperma PV06_03594 N
PV08_06011 Exophiala spinifera PV08_06011 N
PV09_05917 Verruconis gallopava PV09_05917 N
PV10_07538 Exophiala mesophila PV10_07538 N
PV11_08024 Exophiala sideris PV11_08024 N
PVAR5_2222 Byssochlamys spectabilis PVAR5_2222 N
SBOR_0088 Sclerotinia borealis SBOR_0088 N
THITE_19726 Thielavia terrestris THITE_19726 N
TSTA_068680 Talaromyces stipitatus TSTA_068680 N
UCRNP2_236 Neofusicoccum parvum UCRNP2_236 N
UCRPA7_3950 Togninia minima UCRPA7_3950 N
V499_01440 Pseudogymnoascus pannorum V499_01440 N
W97_06158 Coniosporium apollinis W97_06158 N
Z517_08280 Fonsecaea pedrosoi Z517_08280 N
Z518_04016 Rhinocladiella mackenziei Z518_04016 N
Z519_03005 Cladophialophora bantiana Z519_03005 N