CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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AMTR_s00114p00142630
(
Amborella trichopoda
)
B3
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02362 (B3)
IPR003340
AMTR_s00114p00142630
T018362_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
RAV1
M01646_2.00
Arabidopsis thaliana
NCACCTGAHN
NDTCAGGTGN
PBM
Weirauch et al.(2014)
pTH8592
0.704
0.704
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ERM98946
B3
9
109
FDKPLTPSDVGKLNRLVIPKQHAEKYFPLDQTSNEKGLLLGFEDNSGKPWRFRYSYWNSSQSYVLTKGWSRFVKEKQLCAGDIVSFSRHSGKLFIAFKHRA
Links
Other
B3
family TFs
Other
Amborella trichopoda
TFs
256 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Traes_2DL_896E50180
Triticum aestivum
Traes_2DL_896E50180
I
0.857
Traes_2AL_41E2E66D9
Triticum aestivum
Traes_2AL_41E2E66D9
I
0.787
MLOC_66387
Hordeum vulgare
MLOC_66387
I
0.786
MTR_8g023990
Medicago truncatula
MTR_8g023990
I
0.786
OB03G11610
Oryza brachyantha
OB03G11610
N
0.786
OMERI02G27240
Oryza meridionalis
OMERI02G27240
N
0.786
OPUNC02G25780
Oryza punctata
OPUNC02G25780
N
0.786
Traes_6AL_44AA5642C
Triticum aestivum
Traes_6AL_44AA5642C
I
0.786
Traes_6DL_359607E93
Triticum aestivum
Traes_6DL_359607E93
I
0.786
TRIUR3_24950
Triticum urartu
TRIUR3_24950
I
0.786
BGIOSGA014498
Oryza indica
BGIOSGA014498
I
0.776
BRADI5G19260
Brachypodium distachyon
BRADI5G19260
I
0.776
LPERR03G01560
Leersia perrieri
LPERR03G01560
N
0.776
LPERR04G18630
Leersia perrieri
LPERR04G18630
N
0.776
MTR_7g117455
Medicago truncatula
MTR_7g117455
I
0.776
OBART04G22880
Oryza barthii
OBART04G22880
I
0.776
OGLUM04G22780
Oryza glumaepatula
OGLUM04G22780
I
0.776
ONIVA04G22030
Oryza nivara
ONIVA04G22030
I
0.776
ORGLA04G0198400
Oryza glaberrima
ORGLA04G0198400
I
0.776
OS04G0581400
Oryza sativa
OS04G0581400
I
0.776
PGSC0003DMG400008936
Solanum tuberosum
PGSC0003DMG400008936
N
0.776
PGSC0003DMG400012222
Solanum tuberosum
PGSC0003DMG400012222
I
0.776
PRUPE_ppa019131mg
Prunus persica
PRUPE_ppa019131mg
I
0.776
Si036864m.g
Setaria italica
Si036864m.g
N
0.776
TCM_005014
Theobroma cacao
TCM_005014
I
0.776
VIT_02s0025g03000
Vitis vinifera
VIT_02s0025g03000
I
0.776
Pm024248
Prunus mume
Pm024248
I
0.776
Eucgr.L00348
Eucalyptus grandis
Eucgr.L00348
I
0.776
evm.TU.supercontig_57.71
Carica papaya
evm.TU.supercontig_57.71
I
0.776
SapurV1A.0003s0340
Salix purpurea
SapurV1A.0003s0340
I
0.776
GRMZM2G098443
Zea mays
GRMZM2G098443
N
0.765
Solyc09g010230.1
Solanum lycopersicum
Solyc09g010230.1
N
0.765
TCM_015590
Theobroma cacao
TCM_015590
I
0.765
Traes_4DL_A83084AC1
Triticum aestivum
Traes_4DL_A83084AC1
N
0.765
Ca_01368
Cicer arietinum
Ca_01368
I
0.765
30076.m004471
Ricinus communis
30076.m004471
I
0.765
Cucsa.241440
Cucumis sativus
Cucsa.241440
I
0.765
Aquca_037_00291
Aquilegia coerulea
Aquca_037_00291
I
0.765
gene01855-v1.0-hybrid
Fragaria vesca
gene01855-v1.0-hybrid
I
0.765
Gorai.001G150200
Gossypium raimondii
Gorai.001G150200
I
0.765
Pavir.Ia04549
Panicum virgatum
Pavir.Ia04549
N
0.765
Pavir.Ib00059
Panicum virgatum
Pavir.Ib00059
N
0.765
SapurV1A.0974s0140
Salix purpurea
SapurV1A.0974s0140
N
0.765
SapurV1A.1586s0010
Salix purpurea
SapurV1A.1586s0010
N
0.765
Thhalv10001555m.g
Eutrema salsugineum
Thhalv10001555m.g
N
0.765
BGIOSGA005835
Oryza indica
BGIOSGA005835
N
0.762
BGIOSGA011738
Oryza indica
BGIOSGA011738
N
0.762
LPERR02G22870
Leersia perrieri
LPERR02G22870
I
0.762
OB02G35380
Oryza brachyantha
OB02G35380
I
0.762
OBART02G28100
Oryza barthii
OBART02G28100
N
0.762
OBART03G01650
Oryza barthii
OBART03G01650
N
0.762
OGLUM02G28660
Oryza glumaepatula
OGLUM02G28660
N
0.762
OGLUM03G01630
Oryza glumaepatula
OGLUM03G01630
N
0.762
OMERI03G01600
Oryza meridionalis
OMERI03G01600
N
0.762
ONIVA02G30750
Oryza nivara
ONIVA02G30750
N
0.762
ONIVA12G15340
Oryza nivara
ONIVA12G15340
N
0.762
OPUNC03G01540
Oryza punctata
OPUNC03G01540
N
0.762
ORGLA02G0241100
Oryza glaberrima
ORGLA02G0241100
N
0.762
ORGLA03G0014300
Oryza glaberrima
ORGLA03G0014300
N
0.762
ORUFI02G29620
Oryza rufipogon
ORUFI02G29620
N
0.762
OS02G0683500
Oryza sativa
OS02G0683500
N
0.762
OS03G0120900
Oryza sativa
OS03G0120900
N
0.762
Solyc08g083400.2
Solanum lycopersicum
Solyc08g083400.2
I
0.762
Traes_1BL_53C31B54B
Triticum aestivum
Traes_1BL_53C31B54B
I
0.759
AT5G06250
Arabidopsis thaliana
AT5G06250
N
0.755
Bra040478
Brassica rapa
Bra040478
I
0.755
fgenesh2_kg.6__566__AT5G06250.2
Arabidopsis lyrata
fgenesh2_kg.6__566__AT5G06250.2
N
0.755
GLYMA03G42301
Glycine max
GLYMA03G42301
I
0.755
GLYMA19G45090
Glycine max
GLYMA19G45090
I
0.755
GRMZM2G018485
Zea mays
GRMZM2G018485
N
0.755
POPTR_0011s15270
Populus trichocarpa
POPTR_0011s15270
I
0.755
POPTR_0016s07540
Populus trichocarpa
POPTR_0016s07540
N
0.755
VIT_08s0007g02810
Vitis vinifera
VIT_08s0007g02810
N
0.755
Aquca_072_00063
Aquilegia coerulea
Aquca_072_00063
I
0.755
Bostr.25993s0080
Boechera stricta
Bostr.25993s0080
N
0.755
evm.TU.contig_29173.1
Carica papaya
evm.TU.contig_29173.1
I
0.755
gene15627-v1.0-hybrid
Fragaria vesca
gene15627-v1.0-hybrid
I
0.755
Gorai.003G073600
Gossypium raimondii
Gorai.003G073600
I
0.755
Gorai.008G132400
Gossypium raimondii
Gorai.008G132400
I
0.755
Gorai.009G399000
Gossypium raimondii
Gorai.009G399000
N
0.755
Lus10021326.g
Linum usitatissimum
Lus10021326.g
N
0.755
POPTR_0014s10290
Populus trichocarpa
POPTR_0014s10290
I
0.752
Sb01g049150
Sorghum bicolor
Sb01g049150
N
0.752
Sb06g026370
Sorghum bicolor
Sb06g026370
N
0.752
Si011823m.g
Setaria italica
Si011823m.g
N
0.752
Traes_2BL_439C794F5
Triticum aestivum
Traes_2BL_439C794F5
N
0.752
cassava29779.valid.m1
Manihot esculenta
cassava29779.valid.m1
I
0.752
cassava36125.valid.m1
Manihot esculenta
cassava36125.valid.m1
I
0.752
mgf019085m
Mimulus guttatus
mgf019085m
N
0.752
Ciclev10020034m.g
Citrus clementina
Ciclev10020034m.g
I
0.752
orange1.1g013565m.g
Citrus sinensis
orange1.1g013565m.g
I
0.752
Pavir.Ga00960
Panicum virgatum
Pavir.Ga00960
N
0.752
Pavir.J38226
Panicum virgatum
Pavir.J38226
N
0.752
SapurV1A.0162s0420
Salix purpurea
SapurV1A.0162s0420
I
0.752
PK11025.1
Cannabis sativa
PK11025.1
I
0.752
TCM_022729
Theobroma cacao
TCM_022729
N
0.747
NGA1
Arabidopsis thaliana
AT2G46870
N
0.745
Bo4g197410
Brassica oleracea
Bo4g197410
I
0.745
Bra017262
Brassica rapa
Bra017262
N
0.745
fgenesh2_kg.181__3__AT2G46870.1
Arabidopsis lyrata
fgenesh2_kg.181__3__AT2G46870.1
N
0.745
fgenesh2_kg.4__2914__AT2G46870.1
Arabidopsis lyrata
fgenesh2_kg.4__2914__AT2G46870.1
N
0.745
GLYMA07G05381
Glycine max
GLYMA07G05381
I
0.745
GSMUA_Achr4G26430_001
Musa acuminata
GSMUA_Achr4G26430_001
I
0.745
OMERI12G01740
Oryza meridionalis
OMERI12G01740
N
0.745
Si027632m.g
Setaria italica
Si027632m.g
N
0.745
Traes_4DL_D0F3E9568
Triticum aestivum
Traes_4DL_D0F3E9568
N
0.745
Bostr.13129s0349
Boechera stricta
Bostr.13129s0349
N
0.745
Cagra.0050s0013
Capsella grandiflora
Cagra.0050s0013
N
0.745
Carubv10023656m.g
Capsella rubella
Carubv10023656m.g
N
0.745
Ciclev10020450m.g
Citrus clementina
Ciclev10020450m.g
I
0.745
Gorai.002G237900
Gossypium raimondii
Gorai.002G237900
I
0.745
orange1.1g015743m.g
Citrus sinensis
orange1.1g015743m.g
I
0.745
GLYMA16G01951
Glycine max
GLYMA16G01951
I
0.743
GRMZM2G024948
Zea mays
GRMZM2G024948
N
0.743
GRMZM2G102059
Zea mays
GRMZM2G102059
N
0.743
POPTR_0002s18260
Populus trichocarpa
POPTR_0002s18260
N
0.743
Sb04g031710
Sorghum bicolor
Sb04g031710
N
0.743
Cla017937
Citrullus lanatus
Cla017937
I
0.743
evm.TU.supercontig_37.108
Carica papaya
evm.TU.supercontig_37.108
I
0.743
Pavir.Aa00929
Panicum virgatum
Pavir.Aa00929
N
0.743
LjT15D16.50.nc
Lotus japonicus
LjT15D16.50.nc
I
0.743
Gorai.004G128200
Gossypium raimondii
Gorai.004G128200
N
0.740
Cla014858
Citrullus lanatus
Cla014858
N
0.737
Cucsa.106780
Cucumis sativus
Cucsa.106780
N
0.737
Pavir.J27608
Panicum virgatum
Pavir.J27608
N
0.737
Bra000434
Brassica rapa
Bra000434
N
0.735
Bra004501
Brassica rapa
Bra004501
N
0.735
GLYMA02G36090
Glycine max
GLYMA02G36090
I
0.735
GRMZM2G082227
Zea mays
GRMZM2G082227
N
0.735
POPTR_0006s22460
Populus trichocarpa
POPTR_0006s22460
N
0.735
Solyc08g013690.1
Solanum lycopersicum
Solyc08g013690.1
I
0.735
VIT_15s0048g02370
Vitis vinifera
VIT_15s0048g02370
I
0.735
Ca_25633
Cicer arietinum
Ca_25633
I
0.735
30032.m000462
Ricinus communis
30032.m000462
N
0.735
Cagra.0993s0119
Capsella grandiflora
Cagra.0993s0119
N
0.735
Carubv10023925m.g
Capsella rubella
Carubv10023925m.g
N
0.735
Gorai.007G114200
Gossypium raimondii
Gorai.007G114200
I
0.735
Gorai.008G261100
Gossypium raimondii
Gorai.008G261100
I
0.735
SapurV1A.1211s0020
Salix purpurea
SapurV1A.1211s0020
N
0.735
PK04952.1
Cannabis sativa
PK04952.1
I
0.735
Bo3g039420
Brassica oleracea
Bo3g039420
N
0.733
POPTR_0001s45650
Populus trichocarpa
POPTR_0001s45650
I
0.733
cassava19218.valid.m1
Manihot esculenta
cassava19218.valid.m1
N
0.733
gene18594-v1.0-hybrid
Fragaria vesca
gene18594-v1.0-hybrid
I
0.733
SapurV1A.0285s0040
Salix purpurea
SapurV1A.0285s0040
I
0.733
Thhalv10015675m.g
Eutrema salsugineum
Thhalv10015675m.g
I
0.733
chr1.CM0105.800.nc
Lotus japonicus
chr1.CM0105.800.nc
I
0.733
PRUPE_ppa019539mg
Prunus persica
PRUPE_ppa019539mg
I
0.727
Ciclev10012008m.g
Citrus clementina
Ciclev10012008m.g
I
0.727
orange1.1g019261m.g
Citrus sinensis
orange1.1g019261m.g
I
0.727
NGA3
Arabidopsis thaliana
AT1G01030
N
0.724
Bo4g099000
Brassica oleracea
Bo4g099000
N
0.724
Bo6g079210
Brassica oleracea
Bo6g079210
N
0.724
Bo9g176470
Brassica oleracea
Bo9g176470
N
0.724
NGA3
Arabidopsis lyrata
fgenesh2_kg.1__134__AT1G01030.1
N
0.724
NGA2
Arabidopsis lyrata
fgenesh2_kg.5__2696__AT3G61970.1
N
0.724
MTR_1g058350
Medicago truncatula
MTR_1g058350
N
0.724
MTR_7g105370
Medicago truncatula
MTR_7g105370
N
0.724
Sb05g003450
Sorghum bicolor
Sb05g003450
N
0.724
Traes_5BL_B98E347A8
Triticum aestivum
Traes_5BL_B98E347A8
N
0.724
Traes_5DL_CACDF70D6
Triticum aestivum
Traes_5DL_CACDF70D6
N
0.724
TRIUR3_29732
Triticum urartu
TRIUR3_29732
N
0.724
cassava3990.m1
Manihot esculenta
cassava3990.m1
N
0.724
mgf023769m
Mimulus guttatus
mgf023769m
N
0.724
Bostr.13158s0202
Boechera stricta
Bostr.13158s0202
N
0.724
Bostr.5325s0023
Boechera stricta
Bostr.5325s0023
N
0.724
Cagra.1968s0048
Capsella grandiflora
Cagra.1968s0048
N
0.724
Cagra.2117s0038
Capsella grandiflora
Cagra.2117s0038
I
0.724
Carubv10001689m.g
Capsella rubella
Carubv10001689m.g
I
0.724
Carubv10009540m.g
Capsella rubella
Carubv10009540m.g
N
0.724
MDP0000288808
Malus domestica
MDP0000288808
N
0.724
Pavir.Ab02711
Panicum virgatum
Pavir.Ab02711
I
0.724
Pavir.Ca00165
Panicum virgatum
Pavir.Ca00165
N
0.724
Pavir.Cb02052
Panicum virgatum
Pavir.Cb02052
N
0.724
Thhalv10008068m.g
Eutrema salsugineum
Thhalv10008068m.g
N
0.724
PK21157.1
Cannabis sativa
PK21157.1
I
0.724
Bo01079s020
Brassica oleracea
Bo01079s020
N
0.723
OB12G13420
Oryza brachyantha
OB12G13420
N
0.723
OPUNC12G03300
Oryza punctata
OPUNC12G03300
N
0.723
Traes_4BL_D9784B20C1
Triticum aestivum
Traes_4BL_D9784B20C1
N
0.723
MDP0000128295
Malus domestica
MDP0000128295
N
0.723
OLONG_000415
Oryza longistaminata
OLONG_000415
I
0.722
AT3G11580
Arabidopsis thaliana
AT3G11580
N
0.714
BGIOSGA031489
Oryza indica
BGIOSGA031489
N
0.714
Bo3g001110
Brassica oleracea
Bo3g001110
N
0.714
Bo8g097490
Brassica oleracea
Bo8g097490
N
0.714
Bra005886
Brassica rapa
Bra005886
N
0.714
Bra007646
Brassica rapa
Bra007646
N
0.714
Bra033294
Brassica rapa
Bra033294
N
0.714
BRADI4G25170
Brachypodium distachyon
BRADI4G25170
N
0.714
GLYMA03G35700
Glycine max
GLYMA03G35700
N
0.714
GRMZM5G805685
Zea mays
GRMZM5G805685
N
0.714
GSMUA_Achr6G13140_001
Musa acuminata
GSMUA_Achr6G13140_001
N
0.714
OB01G36520
Oryza brachyantha
OB01G36520
I
0.714
OBART10G17010
Oryza barthii
OBART10G17010
N
0.714
OGLUM10G17040
Oryza glumaepatula
OGLUM10G17040
N
0.714
ONIVA10G18740
Oryza nivara
ONIVA10G18740
N
0.714
OPUNC10G16940
Oryza punctata
OPUNC10G16940
N
0.714
ORGLA10G0119700
Oryza glaberrima
ORGLA10G0119700
N
0.714
ORUFI04G24570
Oryza rufipogon
ORUFI04G24570
I
0.714
ORUFI10G18030
Oryza rufipogon
ORUFI10G18030
N
0.714
OS10G0537100
Oryza sativa
OS10G0537100
N
0.714
scaffold_301330.1
Arabidopsis lyrata
scaffold_301330.1
N
0.714
Traes_1BL_60A56C455
Triticum aestivum
Traes_1BL_60A56C455
I
0.714
Traes_1BL_F14523046
Triticum aestivum
Traes_1BL_F14523046
I
0.714
Traes_4DL_59B1C9052
Triticum aestivum
Traes_4DL_59B1C9052
I
0.714
Pm028725
Prunus mume
Pm028725
N
0.714
30068.m002615
Ricinus communis
30068.m002615
I
0.714
mgf023686m
Mimulus guttatus
mgf023686m
I
0.714
Bostr.19424s1090
Boechera stricta
Bostr.19424s1090
N
0.714
Cagra.1655s0012
Capsella grandiflora
Cagra.1655s0012
N
0.714
Carubv10014376m.g
Capsella rubella
Carubv10014376m.g
N
0.714
MDP0000229742
Malus domestica
MDP0000229742
N
0.714
Pavir.J06582
Panicum virgatum
Pavir.J06582
N
0.714
Thhalv10006123m.g
Eutrema salsugineum
Thhalv10006123m.g
I
0.714
ARF31
Arabidopsis thaliana
AT2G36080
N
0.713
Bo4g006900
Brassica oleracea
Bo4g006900
N
0.713
Bo4g035110
Brassica oleracea
Bo4g035110
N
0.713
Bo5g002790
Brassica oleracea
Bo5g002790
N
0.713
Bra005301
Brassica rapa
Bra005301
N
0.713
BRADI1G77150
Brachypodium distachyon
BRADI1G77150
N
0.713
GLYMA10G08871
Glycine max
GLYMA10G08871
I
0.713
GSMUA_Achr6G35600_001
Musa acuminata
GSMUA_Achr6G35600_001
N
0.713
PGSC0003DMG400005856
Solanum tuberosum
PGSC0003DMG400005856
I
0.713
PGSC0003DMG400005857
Solanum tuberosum
PGSC0003DMG400005857
I
0.713
scaffold_402221.1
Arabidopsis lyrata
scaffold_402221.1
N
0.713
Si020241m.g
Setaria italica
Si020241m.g
N
0.713
Cla006845
Citrullus lanatus
Cla006845
I
0.713
Cucsa.349830
Cucumis sativus
Cucsa.349830
N
0.713
Bostr.23794s0488
Boechera stricta
Bostr.23794s0488
N
0.713
Eucgr.E01093
Eucalyptus grandis
Eucgr.E01093
I
0.713
Gorai.006G152400
Gossypium raimondii
Gorai.006G152400
N
0.713
MLOC_56530
Hordeum vulgare
MLOC_56530
N
0.707
Traes_2BL_5ECD53274
Triticum aestivum
Traes_2BL_5ECD53274
N
0.707
mgf018965m
Mimulus guttatus
mgf018965m
N
0.707
AMTR_s00018p00040300
Amborella trichopoda
AMTR_s00018p00040300
N
0.704
Bo5g136360
Brassica oleracea
Bo5g136360
N
0.704
Bra034828
Brassica rapa
Bra034828
N
0.704
F775_04153
Aegilops tauschii
F775_04153
N
0.704
GSMUA_Achr9G02600_001
Musa acuminata
GSMUA_Achr9G02600_001
I
0.704
LPERR10G12990
Leersia perrieri
LPERR10G12990
N
0.704
PGSC0003DMG400028159
Solanum tuberosum
PGSC0003DMG400028159
N
0.704
Solyc10g083210.1
Solanum lycopersicum
Solyc10g083210.1
N
0.704
TRIUR3_01515
Triticum urartu
TRIUR3_01515
N
0.704
Carubv10017696m.g
Capsella rubella
Carubv10017696m.g
I
0.704
Thhalv10021305m.g
Eutrema salsugineum
Thhalv10021305m.g
N
0.704
LjSGA_011266.1
Lotus japonicus
LjSGA_011266.1
N
0.704
Bra014415
Brassica rapa
Bra014415
N
0.703
Bra030497
Brassica rapa
Bra030497
N
0.703
LPERR12G03290
Leersia perrieri
LPERR12G03290
N
0.703
Solyc08g013700.1
Solanum lycopersicum
Solyc08g013700.1
I
0.703
MDP0000138163
Malus domestica
MDP0000138163
N
0.703
Pavir.Ha01761
Panicum virgatum
Pavir.Ha01761
N
0.703
Pavir.Hb01814
Panicum virgatum
Pavir.Hb01814
N
0.703
Thhalv10017156m.g
Eutrema salsugineum
Thhalv10017156m.g
N
0.703
GRMZM2G328742
Zea mays
GRMZM2G328742
N
0.700