CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra035427
(
Brassica rapa
)
B3
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02362 (B3)
IPR003340
Bra035427
T018930_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra035427.1-P
B3
124
226
FCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHNNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENEELRVGVRRHM
Bra035427.1-P
B3
567
615
EDLFKKLEEMFDIKGELLESTKKWQVVYTDDEDDMMMVGDDPWNEFCGM
Links
Other
B3
family TFs
Other
Brassica rapa
TFs
61 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bo1g090350
Brassica oleracea
Bo1g090350
N
1.000
Bostr.10040s0256
Boechera stricta
Bostr.10040s0256
N
0.993
Thhalv10023326m.g
Eutrema salsugineum
Thhalv10023326m.g
N
0.979
SapurV1A.0422s0040
Salix purpurea
SapurV1A.0422s0040
I
0.915
Bo4g083590
Brassica oleracea
Bo4g083590
N
0.908
Lus10024455.g
Linum usitatissimum
Lus10024455.g
N
0.903
Eucgr.G00076
Eucalyptus grandis
Eucgr.G00076
I
0.898
Ciclev10000491m.g
Citrus clementina
Ciclev10000491m.g
N
0.891
Cagra.0996s0001
Capsella grandiflora
Cagra.0996s0001
N
0.889
Carubv10022415m.g
Capsella rubella
Carubv10022415m.g
N
0.889
TCM_027113
Theobroma cacao
TCM_027113
I
0.888
ARF1
Arabidopsis lyrata
fgenesh2_kg.2__468__AT1G59750.1
N
0.886
Lus10007440.g
Linum usitatissimum
Lus10007440.g
N
0.877
Cla001927
Citrullus lanatus
Cla001927
N
0.875
Cucsa.183410
Cucumis sativus
Cucsa.183410
N
0.875
ARF1
Arabidopsis thaliana
AT1G59750
N
0.869
GLYMA12G28550
Glycine max
GLYMA12G28550
N
0.862
29609.m000587
Ricinus communis
29609.m000587
N
0.856
mgf006427m
Mimulus guttatus
mgf006427m
N
0.845
SapurV1A.0225s0120
Salix purpurea
SapurV1A.0225s0120
N
0.830
PRUPE_ppa002394mg
Prunus persica
PRUPE_ppa002394mg
N
0.829
POPTR_0003s00890
Populus trichocarpa
POPTR_0003s00890
N
0.821
cassava11453.m1
Manihot esculenta
cassava11453.m1
N
0.815
cassava11454.m1
Manihot esculenta
cassava11454.m1
N
0.815
cassava11455.m1
Manihot esculenta
cassava11455.m1
N
0.815
cassava11456.m1
Manihot esculenta
cassava11456.m1
N
0.815
cassava7098.valid.m1
Manihot esculenta
cassava7098.valid.m1
N
0.815
cassava7099.valid.m1
Manihot esculenta
cassava7099.valid.m1
N
0.815
GLYMA07G40270
Glycine max
GLYMA07G40270
N
0.808
Solyc01g103050.2
Solanum lycopersicum
Solyc01g103050.2
N
0.801
PGSC0003DMG400020711
Solanum tuberosum
PGSC0003DMG400020711
I
0.800
OBART02G20600
Oryza barthii
OBART02G20600
N
0.779
OLONG_012362
Oryza longistaminata
OLONG_012362
N
0.779
OMERI02G20310
Oryza meridionalis
OMERI02G20310
N
0.779
ONIVA02G22590
Oryza nivara
ONIVA02G22590
N
0.779
ORUFI02G21640
Oryza rufipogon
ORUFI02G21640
N
0.779
ARF7
Oryza sativa
OS02G0557200
N
0.779
OGLUM02G20880
Oryza glumaepatula
OGLUM02G20880
N
0.778
BGIOSGA008429
Oryza indica
BGIOSGA008429
N
0.774
OPUNC02G18520
Oryza punctata
OPUNC02G18520
N
0.774
ORGLA02G0176700
Oryza glaberrima
ORGLA02G0176700
N
0.774
Gorai.011G091100
Gossypium raimondii
Gorai.011G091100
N
0.774
Sb04g022830
Sorghum bicolor
Sb04g022830
N
0.766
Traes_2DL_A86E54838
Triticum aestivum
Traes_2DL_A86E54838
N
0.761
MLOC_64596
Hordeum vulgare
MLOC_64596
I
0.750
Traes_2AL_89543BA1A
Triticum aestivum
Traes_2AL_89543BA1A
N
0.750
TRIUR3_33501
Triticum urartu
TRIUR3_33501
N
0.750
BRADI4G17410
Brachypodium distachyon
BRADI4G17410
I
0.739
GSMUA_Achr6G16450_001
Musa acuminata
GSMUA_Achr6G16450_001
N
0.732
VIT_18s0089g00910
Vitis vinifera
VIT_18s0089g00910
N
0.730
BGIOSGA036199
Oryza indica
BGIOSGA036199
N
0.709
OBART12G11990
Oryza barthii
OBART12G11990
N
0.709
OGLUM12G13560
Oryza glumaepatula
OGLUM12G13560
N
0.709
OLONG_019549
Oryza longistaminata
OLONG_019549
N
0.709
OMERI12G08550
Oryza meridionalis
OMERI12G08550
N
0.709
ONIVA12G12070
Oryza nivara
ONIVA12G12070
N
0.709
OPUNC12G10620
Oryza punctata
OPUNC12G10620
N
0.709
ORGLA12G0109100
Oryza glaberrima
ORGLA12G0109100
N
0.709
ORUFI12G13110
Oryza rufipogon
ORUFI12G13110
N
0.709
ARF24
Oryza sativa
OS12G0479400
N
0.709
AMTR_s00021p00221770
Amborella trichopoda
AMTR_s00021p00221770
N
0.705