CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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OB04G29740
(
Oryza brachyantha
)
B3
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02362 (B3)
IPR003340
OB04G29740
T019918_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
RAV1
M01646_2.00
Arabidopsis thaliana
NCACCTGAHN
NDTCAGGTGN
PBM
Weirauch et al.(2014)
pTH8592
0.750
0.750
NGA4
M06707_2.00
Arabidopsis thaliana
NHHBDYCAGGTRNHWH
DWDNYACCTGRHVDDN
Dap-seq
OMalley et al.(2016)
NGA4_col_a
0.708
0.708
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
OB04G29740.1
B3
112
186
FDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSAANEKGLLLSFEDRTGKLWRFRYSYWNSSQSYVMTKGWSRFGFD
Links
Other
B3
family TFs
Other
Oryza brachyantha
TFs
65 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AC216872.3_FG002
Zea mays
AC216872.3_FG002
N
0.700
AMTR_s00018p00040300
Amborella trichopoda
AMTR_s00018p00040300
N
0.833
NGA1
Arabidopsis thaliana
AT2G46870
N
0.875
BGIOSGA031489
Oryza indica
BGIOSGA031489
N
0.819
Bostr.25993s0080
Boechera stricta
Bostr.25993s0080
N
0.889
Bostr.5325s0023
Boechera stricta
Bostr.5325s0023
N
0.819
Bra005886
Brassica rapa
Bra005886
N
0.792
Bra009171
Brassica rapa
Bra009171
N
0.724
BRADI4G25170
Brachypodium distachyon
BRADI4G25170
N
0.722
Cagra.0050s0013
Capsella grandiflora
Cagra.0050s0013
N
0.875
Carubv10001406m.g
Capsella rubella
Carubv10001406m.g
I
0.736
Carubv10023656m.g
Capsella rubella
Carubv10023656m.g
N
0.875
Ca_25633
Cicer arietinum
Ca_25633
I
0.778
Cucsa.241440
Cucumis sativus
Cucsa.241440
I
0.764
F775_04153
Aegilops tauschii
F775_04153
N
0.819
fgenesh2_kg.181__3__AT2G46870.1
Arabidopsis lyrata
fgenesh2_kg.181__3__AT2G46870.1
N
0.875
fgenesh2_kg.4__2914__AT2G46870.1
Arabidopsis lyrata
fgenesh2_kg.4__2914__AT2G46870.1
N
0.875
GLYMA03G35700
Glycine max
GLYMA03G35700
N
0.764
GLYMA19G45090
Glycine max
GLYMA19G45090
I
0.875
Gorai.001G150200
Gossypium raimondii
Gorai.001G150200
I
0.889
Gorai.007G114200
Gossypium raimondii
Gorai.007G114200
I
0.875
Gorai.008G261100
Gossypium raimondii
Gorai.008G261100
I
0.847
GRMZM2G125095
Zea mays
GRMZM2G125095
N
0.764
GRMZM5G805685
Zea mays
GRMZM5G805685
N
0.722
GSMUA_Achr9G02600_001
Musa acuminata
GSMUA_Achr9G02600_001
I
0.778
LPERR10G12990
Leersia perrieri
LPERR10G12990
N
0.819
Lus10021326.g
Linum usitatissimum
Lus10021326.g
N
0.750
MDP0000128295
Malus domestica
MDP0000128295
N
0.809
MLOC_48938
Hordeum vulgare
MLOC_48938
N
0.864
MTR_8g023990
Medicago truncatula
MTR_8g023990
I
0.889
OB01G12610
Oryza brachyantha
OB01G12610
I
0.764
OB03G11610
Oryza brachyantha
OB03G11610
N
0.931
OB10G24100
Oryza brachyantha
OB10G24100
N
0.756
OBART02G28110
Oryza barthii
OBART02G28110
N
0.811
OBART10G17010
Oryza barthii
OBART10G17010
N
0.819
OGLUM10G17040
Oryza glumaepatula
OGLUM10G17040
N
0.819
OLONG_010584
Oryza longistaminata
OLONG_010584
I
0.745
OMERI08G03480
Oryza meridionalis
OMERI08G03480
N
0.736
ONIVA10G18740
Oryza nivara
ONIVA10G18740
N
0.819
OPUNC04G20430
Oryza punctata
OPUNC04G20430
I
0.919
OPUNC07G09160
Oryza punctata
OPUNC07G09160
N
0.778
OPUNC10G16940
Oryza punctata
OPUNC10G16940
N
0.819
ORGLA10G0119700
Oryza glaberrima
ORGLA10G0119700
N
0.819
ORUFI04G24570
Oryza rufipogon
ORUFI04G24570
I
0.758
ORUFI10G18030
Oryza rufipogon
ORUFI10G18030
N
0.819
OS10G0537100
Oryza sativa
OS10G0537100
N
0.819
Pavir.Fa01903
Panicum virgatum
Pavir.Fa01903
N
0.716
Pavir.Ia04549
Panicum virgatum
Pavir.Ia04549
N
0.917
Pavir.Ib00059
Panicum virgatum
Pavir.Ib00059
N
0.917
Pavir.J27608
Panicum virgatum
Pavir.J27608
N
0.705
PGSC0003DMG400008936
Solanum tuberosum
PGSC0003DMG400008936
N
0.792
PGSC0003DMG400028159
Solanum tuberosum
PGSC0003DMG400028159
N
0.764
PK04952.1
Cannabis sativa
PK04952.1
I
0.764
SapurV1A.0666s0090
Salix purpurea
SapurV1A.0666s0090
I
0.900
SapurV1A.0974s0140
Salix purpurea
SapurV1A.0974s0140
N
0.778
SapurV1A.1211s0020
Salix purpurea
SapurV1A.1211s0020
N
0.736
SapurV1A.1586s0010
Salix purpurea
SapurV1A.1586s0010
N
0.778
Si036864m.g
Setaria italica
Si036864m.g
N
0.931
Solyc10g083210.1
Solanum lycopersicum
Solyc10g083210.1
N
0.764
TCM_015590
Theobroma cacao
TCM_015590
I
0.903
Thhalv10021305m.g
Eutrema salsugineum
Thhalv10021305m.g
N
0.764
Traes_2AL_41E2E66D9
Triticum aestivum
Traes_2AL_41E2E66D9
I
0.753
Traes_2DL_896E50180
Triticum aestivum
Traes_2DL_896E50180
I
0.929
Traes_3AS_2E5380A2A
Triticum aestivum
Traes_3AS_2E5380A2A
I
0.722
TRIUR3_24950
Triticum urartu
TRIUR3_24950
I
0.743