CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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HSI2
(
Arabidopsis lyrata
)
B3
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02362 (B3)
IPR003340
scaffold_401535.1
T021173_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
scaffold_401535.1
B3
300
401
FEKTLSASDAGRIGRLVLPKACAEAYFPPISQSEGIPLKIQDVRGKEWTFQFRYWPNNNSRMYVLEGVTPCIQSMMLQAGDTVTFSRVDPGGKLIMGSRKAA
Links
Other
B3
family TFs
Other
Arabidopsis lyrata
TFs
180 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AMTR_s00029p00112130
Amborella trichopoda
AMTR_s00029p00112130
N
AMTR_s00009p00175450
Amborella trichopoda
AMTR_s00009p00175450
I
AMTR_s00098p00170370
Amborella trichopoda
AMTR_s00098p00170370
N
Aquca_005_00425
Aquilegia coerulea
Aquca_005_00425
I
ILR3
Arabidopsis lyrata
fgenesh2_kg.8__1365__AT5G54680.1
I
ILR3
Arabidopsis thaliana
AT5G54680
D
Bostr.26833s0797
Boechera stricta
Bostr.26833s0797
I
Bo3g021940
Brassica oleracea
Bo3g021940
I
Bra002964
Brassica rapa
Bra002964
I
Bra022738
Brassica rapa
Bra022738
I
Bra029011
Brassica rapa
Bra029011
I
PK23013.1
Cannabis sativa
PK23013.1
I
Cagra.1629s0040
Capsella grandiflora
Cagra.1629s0040
I
Carubv10026758m.g
Capsella rubella
Carubv10026758m.g
I
evm.TU.supercontig_97.78
Carica papaya
evm.TU.supercontig_97.78
I
Ca_16355
Cicer arietinum
Ca_16355
I
Ca_06956
Cicer arietinum
Ca_06956
I
Cla001735
Citrullus lanatus
Cla001735
I
Ciclev10016381m.g
Citrus clementina
Ciclev10016381m.g
N
Ciclev10009354m.g
Citrus clementina
Ciclev10009354m.g
I
orange1.1g026646m.g
Citrus sinensis
orange1.1g026646m.g
N
orange1.1g026599m.g
Citrus sinensis
orange1.1g026599m.g
I
Cucsa.267130
Cucumis sativus
Cucsa.267130
I
Cucsa.267170
Cucumis sativus
Cucsa.267170
I
Eucgr.F03420
Eucalyptus grandis
Eucgr.F03420
I
Thhalv10014564m.g
Eutrema salsugineum
Thhalv10014564m.g
I
gene24654-v1.0-hybrid
Fragaria vesca
gene24654-v1.0-hybrid
I
gene03303-v1.0-hybrid
Fragaria vesca
gene03303-v1.0-hybrid
I
GLYMA13G36260
Glycine max
GLYMA13G36260
I
GLYMA12G16560
Glycine max
GLYMA12G16560
N
GLYMA06G41620
Glycine max
GLYMA06G41620
I
Gorai.013G164100
Gossypium raimondii
Gorai.013G164100
I
Gorai.002G081900
Gossypium raimondii
Gorai.002G081900
I
LPERR02G01020
Leersia perrieri
LPERR02G01020
N
Lus10011167.g
Linum usitatissimum
Lus10011167.g
I
Lus10043076.g
Linum usitatissimum
Lus10043076.g
I
chr3.CM0155.80.nd
Lotus japonicus
chr3.CM0155.80.nd
N
MDP0000264803
Malus domestica
MDP0000264803
I
MDP0000323291
Malus domestica
MDP0000323291
N
cassava24574.valid.m1
Manihot esculenta
cassava24574.valid.m1
I
cassava37031.valid.m1
Manihot esculenta
cassava37031.valid.m1
I
cassava37032.valid.m1
Manihot esculenta
cassava37032.valid.m1
I
MTR_2g082640
Medicago truncatula
MTR_2g082640
I
MTR_4g081370
Medicago truncatula
MTR_4g081370
I
mgf009119m
Mimulus guttatus
mgf009119m
I
mgf012088m
Mimulus guttatus
mgf012088m
I
GSMUA_Achr8G33180_001
Musa acuminata
GSMUA_Achr8G33180_001
I
GSMUA_Achr3G23080_001
Musa acuminata
GSMUA_Achr3G23080_001
I
OBART02G01220
Oryza barthii
OBART02G01220
N
ORGLA02G0011200
Oryza glaberrima
ORGLA02G0011200
N
OGLUM02G01100
Oryza glumaepatula
OGLUM02G01100
N
BGIOSGA007247
Oryza indica
BGIOSGA007247
N
OLONG_000275
Oryza longistaminata
OLONG_000275
N
OMERI02G00630
Oryza meridionalis
OMERI02G00630
N
ONIVA02G01100
Oryza nivara
ONIVA02G01100
N
OPUNC02G00650
Oryza punctata
OPUNC02G00650
N
ORUFI02G01220
Oryza rufipogon
ORUFI02G01220
N
OS02G0116600
Oryza sativa
OS02G0116600
N
Pavir.Ab00172
Panicum virgatum
Pavir.Ab00172
N
PDK_20s1322801g004
Phoenix dactylifera
PDK_20s1322801g004
N
e_gw1.229.33.1
Physcomitrella patens
e_gw1.229.33.1
I
estExt_gwp_gw1.C_2460032
Physcomitrella patens
estExt_gwp_gw1.C_2460032
I
fgenesh1_pg.scaffold_13000185
Physcomitrella patens
fgenesh1_pg.scaffold_13000185
I
POPTR_0004s03190
Populus trichocarpa
POPTR_0004s03190
N
POPTR_0001s44230
Populus trichocarpa
POPTR_0001s44230
I
POPTR_0011s03360
Populus trichocarpa
POPTR_0011s03360
N
POPTR_0011s13580
Populus trichocarpa
POPTR_0011s13580
I
Pm029465
Prunus mume
Pm029465
I
PRUPE_ppa009077mg
Prunus persica
PRUPE_ppa009077mg
I
PRUPE_ppa010730mg
Prunus persica
PRUPE_ppa010730mg
I
28166.m001054
Ricinus communis
28166.m001054
I
SapurV1A.0502s0080
Salix purpurea
SapurV1A.0502s0080
N
SapurV1A.0535s0060
Salix purpurea
SapurV1A.0535s0060
N
SapurV1A.0712s0010
Salix purpurea
SapurV1A.0712s0010
I
SapurV1A.3390s0010
Salix purpurea
SapurV1A.3390s0010
N
SELMODRAFT_165556
Selaginella moellendorffii
SELMODRAFT_165556
I
SELMODRAFT_165311
Selaginella moellendorffii
SELMODRAFT_165311
I
Si018232m.g
Setaria italica
Si018232m.g
N
Solyc07g064040.2
Solanum lycopersicum
Solyc07g064040.2
I
TCM_030082
Theobroma cacao
TCM_030082
I
TCM_031118
Theobroma cacao
TCM_031118
I
VIT_00s0532g00050
Vitis vinifera
VIT_00s0532g00050
N
VIT_12s0059g02650
Vitis vinifera
VIT_12s0059g02650
I