CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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TCM_042067
(
Theobroma cacao
)
B3
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02362 (B3)
IPR003340
TCM_042067
T021548_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ARF16
M06708_2.00
Arabidopsis thaliana
TTTACGKTTTTGGCGGRAAAA
TTTTYCCGCCAAAAMCGTAAA
Dap-seq
OMalley et al.(2016)
ARF16_col_b
0.918
0.918
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
EOY34377
B3
113
215
FAKTLTQSDANNGGGFSVPRYCAETIFPRLDYTADPPVQTVIAKDVHGEIWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRAENGDLCVGIRRAK
EOY34378
B3
113
215
FAKTLTQSDANNGGGFSVPRYCAETIFPRLDYTADPPVQTVIAKDVHGEIWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRAENGDLCVGIRRAK
EOY34379
B3
113
215
FAKTLTQSDANNGGGFSVPRYCAETIFPRLDYTADPPVQTVIAKDVHGEIWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRAENGDLCVGIRRAK
Links
Other
B3
family TFs
Other
Theobroma cacao
TFs
225 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
27494.m000045
Ricinus communis
27494.m000045
I
0.866
27538.m000327
Ricinus communis
27538.m000327
I
0.969
29908.m005953
Ricinus communis
29908.m005953
I
0.701
30078.m002329
Ricinus communis
30078.m002329
I
0.938
AC207656.3_FG002
Zea mays
AC207656.3_FG002
I
0.938
AMTR_s00148p00046020
Amborella trichopoda
AMTR_s00148p00046020
I
0.845
AMTR_s00155p00082980
Amborella trichopoda
AMTR_s00155p00082980
I
0.887
Aquca_030_00152
Aquilegia coerulea
Aquca_030_00152
I
0.959
ARF10
Arabidopsis thaliana
AT2G28350
I
0.918
ARF16
Arabidopsis thaliana
AT4G30080
D
0.918
BGIOSGA008657
Oryza indica
BGIOSGA008657
I
0.897
ARF10
Oryza indica
BGIOSGA016767
I
0.794
BGIOSGA033142
Oryza indica
BGIOSGA033142
I
0.918
Bo1g014600
Brassica oleracea
Bo1g014600
I
0.918
Bo4g071620
Brassica oleracea
Bo4g071620
I
0.918
Bo7g114200
Brassica oleracea
Bo7g114200
I
0.907
Bostr.27991s0089
Boechera stricta
Bostr.27991s0089
I
0.928
Bostr.7867s0859
Boechera stricta
Bostr.7867s0859
I
0.918
Bra011162
Brassica rapa
Bra011162
I
0.928
Bra011955
Brassica rapa
Bra011955
I
0.928
Bra024109
Brassica rapa
Bra024109
I
0.897
BRADI1G33160
Brachypodium distachyon
BRADI1G33160
I
0.928
BRADI3G28950
Brachypodium distachyon
BRADI3G28950
I
0.938
BRADI3G49320
Brachypodium distachyon
BRADI3G49320
I
0.896
BRADI5G15904
Brachypodium distachyon
BRADI5G15904
I
0.720
Cagra.1744s0020
Capsella grandiflora
Cagra.1744s0020
I
0.918
Cagra.1876s0007
Capsella grandiflora
Cagra.1876s0007
I
0.928
Carubv10004220m.g
Capsella rubella
Carubv10004220m.g
I
0.918
Carubv10022755m.g
Capsella rubella
Carubv10022755m.g
I
0.928
cassava23558.valid.m1
Manihot esculenta
cassava23558.valid.m1
I
0.948
cassava36161.valid.m1
Manihot esculenta
cassava36161.valid.m1
I
0.701
cassava37879.valid.m1
Manihot esculenta
cassava37879.valid.m1
I
0.948
cassava5984.valid.m1
Manihot esculenta
cassava5984.valid.m1
I
0.959
cassava852.valid.m1
Manihot esculenta
cassava852.valid.m1
I
0.959
Ca_02541
Cicer arietinum
Ca_02541
I
0.938
Ca_08488
Cicer arietinum
Ca_08488
I
0.814
Ca_17136
Cicer arietinum
Ca_17136
I
0.918
Ca_17624
Cicer arietinum
Ca_17624
I
0.732
Ca_26121
Cicer arietinum
Ca_26121
I
0.928
chr1.LjT31L11.90.nd
Lotus japonicus
chr1.LjT31L11.90.nd
I
0.732
chr3.LjT10E18.60.nc
Lotus japonicus
chr3.LjT10E18.60.nc
I
0.948
Ciclev10011194m.g
Citrus clementina
Ciclev10011194m.g
I
0.948
Ciclev10027901m.g
Citrus clementina
Ciclev10027901m.g
I
0.918
Ciclev10030860m.g
Citrus clementina
Ciclev10030860m.g
I
0.938
Cla008883
Citrullus lanatus
Cla008883
I
0.918
Cla013979
Citrullus lanatus
Cla013979
I
0.907
Cla018574
Citrullus lanatus
Cla018574
I
0.948
Cla022413
Citrullus lanatus
Cla022413
I
0.722
Cucsa.124410
Cucumis sativus
Cucsa.124410
I
0.948
Cucsa.137650
Cucumis sativus
Cucsa.137650
I
0.907
Cucsa.386060
Cucumis sativus
Cucsa.386060
I
0.918
estExt_fgenesh1_pm.C_3390006
Physcomitrella patens
estExt_fgenesh1_pm.C_3390006
I
0.856
Eucgr.F04380
Eucalyptus grandis
Eucgr.F04380
I
0.704
Eucgr.G02838
Eucalyptus grandis
Eucgr.G02838
I
0.928
Eucgr.J00923
Eucalyptus grandis
Eucgr.J00923
I
0.979
Eucgr.K01240
Eucalyptus grandis
Eucgr.K01240
I
0.928
evm.TU.supercontig_49.122
Carica papaya
evm.TU.supercontig_49.122
I
0.701
evm.TU.supercontig_53.88
Carica papaya
evm.TU.supercontig_53.88
I
0.918
evm.TU.supercontig_65.4
Carica papaya
evm.TU.supercontig_65.4
I
0.979
e_gw1.279.55.1
Physcomitrella patens
e_gw1.279.55.1
I
0.856
F775_32978
Aegilops tauschii
F775_32978
I
0.928
ARF10
Arabidopsis lyrata
fgenesh2_kg.4__731__AT2G28350.1
I
0.928
gene09733-v1.0-hybrid
Fragaria vesca
gene09733-v1.0-hybrid
I
0.948
gene16844-v1.0-hybrid
Fragaria vesca
gene16844-v1.0-hybrid
I
0.959
gene23280-v1.0-hybrid
Fragaria vesca
gene23280-v1.0-hybrid
I
0.918
GLYMA10G06080
Glycine max
GLYMA10G06080
I
0.928
GLYMA10G35481
Glycine max
GLYMA10G35481
I
0.918
GLYMA11G20490
Glycine max
GLYMA11G20490
I
0.938
GLYMA12G08110
Glycine max
GLYMA12G08110
I
0.938
GLYMA12G29720
Glycine max
GLYMA12G29720
I
0.959
GLYMA13G20382
Glycine max
GLYMA13G20382
I
0.938
GLYMA13G40030
Glycine max
GLYMA13G40030
I
0.948
GLYMA19G36571
Glycine max
GLYMA19G36571
I
0.897
GLYMA20G32040
Glycine max
GLYMA20G32040
I
0.907
Gorai.003G142500
Gossypium raimondii
Gorai.003G142500
I
0.918
Gorai.006G166400
Gossypium raimondii
Gorai.006G166400
I
0.938
Gorai.009G107800
Gossypium raimondii
Gorai.009G107800
I
0.959
Gorai.009G241900
Gossypium raimondii
Gorai.009G241900
I
0.711
Gorai.010G046000
Gossypium raimondii
Gorai.010G046000
I
0.711
Gorai.011G238900
Gossypium raimondii
Gorai.011G238900
I
0.856
Gorai.012G004800
Gossypium raimondii
Gorai.012G004800
I
0.907
Gorai.013G267100
Gossypium raimondii
Gorai.013G267100
I
0.887
GRMZM2G081406
Zea mays
GRMZM2G081406
I
0.917
GRMZM2G153233
Zea mays
GRMZM2G153233
I
0.928
GRMZM2G159399
Zea mays
GRMZM2G159399
I
0.918
GRMZM2G390641
Zea mays
GRMZM2G390641
I
0.856
GSMUA_Achr11G22870_001
Musa acuminata
GSMUA_Achr11G22870_001
I
0.969
GSMUA_Achr4G18240_001
Musa acuminata
GSMUA_Achr4G18240_001
I
0.969
GSMUA_Achr5G18540_001
Musa acuminata
GSMUA_Achr5G18540_001
I
0.711
GSMUA_Achr8G18930_001
Musa acuminata
GSMUA_Achr8G18930_001
I
0.948
GSMUA_Achr9G29480_001
Musa acuminata
GSMUA_Achr9G29480_001
I
0.711
LjSGA_045968.2
Lotus japonicus
LjSGA_045968.2
I
0.797
LPERR02G20290
Leersia perrieri
LPERR02G20290
I
0.897
LPERR04G15300
Leersia perrieri
LPERR04G15300
I
0.835
LPERR06G21020
Leersia perrieri
LPERR06G21020
I
0.876
LPERR10G09970
Leersia perrieri
LPERR10G09970
I
0.928
Lus10016091.g
Linum usitatissimum
Lus10016091.g
I
0.897
Lus10019940.g
Linum usitatissimum
Lus10019940.g
I
0.948
Lus10021467.g
Linum usitatissimum
Lus10021467.g
I
0.907
Lus10023519.g
Linum usitatissimum
Lus10023519.g
I
0.835
Lus10026510.g
Linum usitatissimum
Lus10026510.g
I
0.948
Lus10040403.g
Linum usitatissimum
Lus10040403.g
I
0.835
MDP0000131481
Malus domestica
MDP0000131481
I
0.979
MDP0000221322
Malus domestica
MDP0000221322
I
0.979
MDP0000256621
Malus domestica
MDP0000256621
I
0.701
MDP0000750392
Malus domestica
MDP0000750392
I
0.918
mgf000336m
Mimulus guttatus
mgf000336m
I
0.907
mgf005300m
Mimulus guttatus
mgf005300m
I
0.928
mgf016139m
Mimulus guttatus
mgf016139m
I
0.958
mgf024607m
Mimulus guttatus
mgf024607m
I
0.907
MLOC_64795
Hordeum vulgare
MLOC_64795
I
0.938
MLOC_77438
Hordeum vulgare
MLOC_77438
I
0.906
MTR_0041s0110
Medicago truncatula
MTR_0041s0110
I
0.753
MTR_1g064430
Medicago truncatula
MTR_1g064430
I
0.928
MTR_1g094960
Medicago truncatula
MTR_1g094960
I
0.918
MTR_2g094570
Medicago truncatula
MTR_2g094570
I
0.928
MTR_4g058930
Medicago truncatula
MTR_4g058930
I
0.928
MTR_7g101275
Medicago truncatula
MTR_7g101275
I
0.732
MTR_7g101280
Medicago truncatula
MTR_7g101280
I
0.753
OB02G32150
Oryza brachyantha
OB02G32150
I
0.896
OB04G25990
Oryza brachyantha
OB04G25990
I
0.763
OB06G32920
Oryza brachyantha
OB06G32920
I
0.938
OB10G20590
Oryza brachyantha
OB10G20590
I
0.928
OBART02G24860
Oryza barthii
OBART02G24860
I
0.760
OBART04G18910
Oryza barthii
OBART04G18910
I
0.794
OBART06G25230
Oryza barthii
OBART06G25230
I
0.938
OBART10G13410
Oryza barthii
OBART10G13410
I
0.918
OGLUM01G18360
Oryza glumaepatula
OGLUM01G18360
I
0.794
OGLUM02G25270
Oryza glumaepatula
OGLUM02G25270
I
0.897
OGLUM06G26560
Oryza glumaepatula
OGLUM06G26560
I
0.938
OGLUM10G13220
Oryza glumaepatula
OGLUM10G13220
I
0.918
OLONG_000617
Oryza longistaminata
OLONG_000617
I
0.887
OLONG_021130
Oryza longistaminata
OLONG_021130
I
0.897
OMERI02G24320
Oryza meridionalis
OMERI02G24320
I
0.897
OMERI04G15770
Oryza meridionalis
OMERI04G15770
I
0.794
OMERI06G25370
Oryza meridionalis
OMERI06G25370
I
0.938
OMERI10G10210
Oryza meridionalis
OMERI10G10210
I
0.918
ONIVA02G27180
Oryza nivara
ONIVA02G27180
I
0.897
ONIVA06G28270
Oryza nivara
ONIVA06G28270
I
0.938
ONIVA06G31350
Oryza nivara
ONIVA06G31350
I
0.794
ONIVA10G14700
Oryza nivara
ONIVA10G14700
I
0.918
OPUNC02G22610
Oryza punctata
OPUNC02G22610
I
0.897
OPUNC04G16630
Oryza punctata
OPUNC04G16630
I
0.794
OPUNC06G22960
Oryza punctata
OPUNC06G22960
I
0.938
OPUNC10G11840
Oryza punctata
OPUNC10G11840
I
0.918
orange1.1g004896m.g
Citrus sinensis
orange1.1g004896m.g
I
0.918
orange1.1g005075m.g
Citrus sinensis
orange1.1g005075m.g
I
0.948
orange1.1g005482m.g
Citrus sinensis
orange1.1g005482m.g
I
0.938
ORGLA02G0215100
Oryza glaberrima
ORGLA02G0215100
I
0.897
ORGLA04G0160200
Oryza glaberrima
ORGLA04G0160200
I
0.794
ORGLA06G0209500
Oryza glaberrima
ORGLA06G0209500
I
0.938
ORGLA10G0115500
Oryza glaberrima
ORGLA10G0115500
I
0.918
ORUFI02G26180
Oryza rufipogon
ORUFI02G26180
I
0.897
ORUFI04G20430
Oryza rufipogon
ORUFI04G20430
I
0.761
ORUFI06G27120
Oryza rufipogon
ORUFI06G27120
I
0.938
ORUFI10G14150
Oryza rufipogon
ORUFI10G14150
I
0.918
ARF8
Oryza sativa
OS02G0628600
I
0.897
OS04G0519700
Oryza sativa
OS04G0519700
I
0.794
ARF18
Oryza sativa
OS06G0685700
I
0.938
ARF22
Oryza sativa
OS10G0479900
I
0.918
Pavir.Da00107
Panicum virgatum
Pavir.Da00107
I
0.928
Pavir.Gb00635
Panicum virgatum
Pavir.Gb00635
I
0.823
Pavir.Ia01695
Panicum virgatum
Pavir.Ia01695
I
0.916
Pavir.J03524
Panicum virgatum
Pavir.J03524
I
0.711
Pavir.J24081
Panicum virgatum
Pavir.J24081
I
0.823
Pavir.J26437
Panicum virgatum
Pavir.J26437
I
0.938
Pavir.J37640
Panicum virgatum
Pavir.J37640
I
0.732
PDK_20s1359671g001
Phoenix dactylifera
PDK_20s1359671g001
I
0.921
PGSC0003DMG400008081
Solanum tuberosum
PGSC0003DMG400008081
I
0.938
PGSC0003DMG400021560
Solanum tuberosum
PGSC0003DMG400021560
I
0.948
PGSC0003DMG400024320
Solanum tuberosum
PGSC0003DMG400024320
I
0.804
PK10136.1
Cannabis sativa
PK10136.1
I
0.722
PK13064.1
Cannabis sativa
PK13064.1
I
0.928
PK13393.1
Cannabis sativa
PK13393.1
I
0.804
PK17007.1
Cannabis sativa
PK17007.1
I
0.948
Pm018533
Prunus mume
Pm018533
I
0.907
Pm019126
Prunus mume
Pm019126
I
0.701
Pm030120
Prunus mume
Pm030120
I
0.948
Pm031275
Prunus mume
Pm031275
I
0.990
POPTR_0004s22130
Populus trichocarpa
POPTR_0004s22130
I
0.969
POPTR_0005s16320
Populus trichocarpa
POPTR_0005s16320
I
0.701
POPTR_0006s12930
Populus trichocarpa
POPTR_0006s12930
I
0.897
POPTR_0008s03890
Populus trichocarpa
POPTR_0008s03890
I
0.948
POPTR_0010s23000
Populus trichocarpa
POPTR_0010s23000
I
0.948
POPTR_0016s09150
Populus trichocarpa
POPTR_0016s09150
I
0.918
POPTR_0848s00200
Populus trichocarpa
POPTR_0848s00200
I
0.969
PRUPE_ppa002082mg
Prunus persica
PRUPE_ppa002082mg
I
0.979
PRUPE_ppa002195mg
Prunus persica
PRUPE_ppa002195mg
I
0.948
PRUPE_ppa002710mg
Prunus persica
PRUPE_ppa002710mg
I
0.928
PRUPE_ppa003136mg
Prunus persica
PRUPE_ppa003136mg
I
0.711
SapurV1A.0049s0400
Salix purpurea
SapurV1A.0049s0400
I
0.928
SapurV1A.0141s0090
Salix purpurea
SapurV1A.0141s0090
I
0.887
SapurV1A.0216s0160
Salix purpurea
SapurV1A.0216s0160
I
0.979
SapurV1A.0331s0130
Salix purpurea
SapurV1A.0331s0130
I
0.701
SapurV1A.0518s0120
Salix purpurea
SapurV1A.0518s0120
I
0.938
SapurV1A.0657s0050
Salix purpurea
SapurV1A.0657s0050
I
0.938
SapurV1A.0986s0010
Salix purpurea
SapurV1A.0986s0010
I
0.907
Sb01g019130
Sorghum bicolor
Sb01g019130
I
0.938
Sb04g026610
Sorghum bicolor
Sb04g026610
I
0.917
Sb10g027790
Sorghum bicolor
Sb10g027790
I
0.938
ARF16
Arabidopsis lyrata
scaffold_701217.1
I
0.918
SELMODRAFT_437622
Selaginella moellendorffii
SELMODRAFT_437622
I
0.835
SELMODRAFT_443304
Selaginella moellendorffii
SELMODRAFT_443304
I
0.856
SELMODRAFT_444549
Selaginella moellendorffii
SELMODRAFT_444549
I
0.856
SELMODRAFT_451564
Selaginella moellendorffii
SELMODRAFT_451564
I
0.835
Si005991m.g
Setaria italica
Si005991m.g
I
0.938
Si009541m.g
Setaria italica
Si009541m.g
I
0.784
Si016509m.g
Setaria italica
Si016509m.g
I
0.907
Si034525m.g
Setaria italica
Si034525m.g
I
0.938
Solyc06g075150.2
Solanum lycopersicum
Solyc06g075150.2
I
0.786
Solyc09g007810.2
Solanum lycopersicum
Solyc09g007810.2
I
0.948
Solyc10g086130.1
Solanum lycopersicum
Solyc10g086130.1
I
0.784
Solyc11g069500.1
Solanum lycopersicum
Solyc11g069500.1
I
0.959
TCM_022163
Theobroma cacao
TCM_022163
I
0.938
TCM_029792
Theobroma cacao
TCM_029792
I
0.717
TCM_035002
Theobroma cacao
TCM_035002
I
0.722
TCM_043157
Theobroma cacao
TCM_043157
I
0.928
Thhalv10016329m.g
Eutrema salsugineum
Thhalv10016329m.g
I
0.928
Thhalv10024601m.g
Eutrema salsugineum
Thhalv10024601m.g
I
0.918
Traes_2BL_A1A475B0F
Triticum aestivum
Traes_2BL_A1A475B0F
I
0.823
Traes_6DL_52A25BEA4
Triticum aestivum
Traes_6DL_52A25BEA4
I
0.861
ARF10
Vitis vinifera
VIT_06s0004g02750
I
0.990
VIT_08s0040g01810
Vitis vinifera
VIT_08s0040g01810
I
0.938
ARF16
Vitis vinifera
VIT_13s0019g04380
I
0.918