CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
30068.m002615
(
Ricinus communis
)
B3
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02362 (B3)
IPR003340
30068.m002615
T022194_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
RAV1
M01646_2.00
Arabidopsis thaliana
NCACCTGAHN
NDTCAGGTGN
PBM
Weirauch et al.(2014)
pTH8592
0.703
0.703
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
30068.m002615
B3
103
208
FDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSTNDKGLLLNFEDKTGKAWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRGVGEAAKDRLYIDWRRRP
Links
Other
B3
family TFs
Other
Ricinus communis
TFs
260 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Traes_2DL_896E50180
Triticum aestivum
Traes_2DL_896E50180
I
1.000
cassava39049.m1
Manihot esculenta
cassava39049.m1
I
0.960
Eucgr.E01093
Eucalyptus grandis
Eucgr.E01093
I
0.951
Gorai.008G261100
Gossypium raimondii
Gorai.008G261100
I
0.951
Pm028725
Prunus mume
Pm028725
N
0.911
PRUPE_ppa015999mg
Prunus persica
PRUPE_ppa015999mg
N
0.901
Ciclev10020450m.g
Citrus clementina
Ciclev10020450m.g
I
0.901
gene01855-v1.0-hybrid
Fragaria vesca
gene01855-v1.0-hybrid
I
0.901
orange1.1g015743m.g
Citrus sinensis
orange1.1g015743m.g
I
0.901
POPTR_0011s15270
Populus trichocarpa
POPTR_0011s15270
I
0.891
TCM_015590
Theobroma cacao
TCM_015590
I
0.891
VIT_02s0025g03000
Vitis vinifera
VIT_02s0025g03000
I
0.891
VIT_15s0048g02370
Vitis vinifera
VIT_15s0048g02370
I
0.891
Cucsa.193290
Cucumis sativus
Cucsa.193290
I
0.891
evm.TU.supercontig_37.108
Carica papaya
evm.TU.supercontig_37.108
I
0.891
evm.TU.supercontig_57.71
Carica papaya
evm.TU.supercontig_57.71
I
0.891
PK21157.1
Cannabis sativa
PK21157.1
I
0.891
PGSC0003DMG400012222
Solanum tuberosum
PGSC0003DMG400012222
I
0.881
POPTR_0001s45650
Populus trichocarpa
POPTR_0001s45650
I
0.881
PRUPE_ppa019131mg
Prunus persica
PRUPE_ppa019131mg
I
0.881
TCM_005014
Theobroma cacao
TCM_005014
I
0.881
Traes_4BL_D9784B20C1
Triticum aestivum
Traes_4BL_D9784B20C1
N
0.881
Pm024248
Prunus mume
Pm024248
I
0.881
30076.m004471
Ricinus communis
30076.m004471
I
0.881
Eucgr.L00348
Eucalyptus grandis
Eucgr.L00348
I
0.881
Gorai.001G150200
Gossypium raimondii
Gorai.001G150200
I
0.881
BRADI1G77150
Brachypodium distachyon
BRADI1G77150
N
0.871
Solyc08g083400.2
Solanum lycopersicum
Solyc08g083400.2
I
0.871
Cla005055
Citrullus lanatus
Cla005055
N
0.871
cassava29779.valid.m1
Manihot esculenta
cassava29779.valid.m1
I
0.871
cassava36125.valid.m1
Manihot esculenta
cassava36125.valid.m1
I
0.871
Gorai.003G073600
Gossypium raimondii
Gorai.003G073600
I
0.871
Gorai.007G114200
Gossypium raimondii
Gorai.007G114200
I
0.871
SapurV1A.0285s0040
Salix purpurea
SapurV1A.0285s0040
I
0.871
NGA2
Arabidopsis thaliana
AT3G61970
N
0.861
Bra003482
Brassica rapa
Bra003482
N
0.861
GRMZM2G082227
Zea mays
GRMZM2G082227
N
0.861
PGSC0003DMG400005856
Solanum tuberosum
PGSC0003DMG400005856
I
0.861
PGSC0003DMG400005857
Solanum tuberosum
PGSC0003DMG400005857
I
0.861
Cucsa.349830
Cucumis sativus
Cucsa.349830
N
0.861
Aquca_037_00291
Aquilegia coerulea
Aquca_037_00291
I
0.861
Cagra.0483s0046
Capsella grandiflora
Cagra.0483s0046
I
0.861
Thhalv10006123m.g
Eutrema salsugineum
Thhalv10006123m.g
I
0.861
chr1.CM0105.800.nc
Lotus japonicus
chr1.CM0105.800.nc
I
0.861
LjT15D16.50.nc
Lotus japonicus
LjT15D16.50.nc
I
0.861
NGA2
Arabidopsis lyrata
fgenesh2_kg.5__2696__AT3G61970.1
N
0.851
GLYMA07G05381
Glycine max
GLYMA07G05381
I
0.851
GLYMA16G01951
Glycine max
GLYMA16G01951
I
0.851
Solyc08g013690.1
Solanum lycopersicum
Solyc08g013690.1
I
0.851
Solyc08g013700.1
Solanum lycopersicum
Solyc08g013700.1
I
0.851
Cla006845
Citrullus lanatus
Cla006845
I
0.851
Bostr.13158s0202
Boechera stricta
Bostr.13158s0202
N
0.851
Carubv10017696m.g
Capsella rubella
Carubv10017696m.g
I
0.851
Ciclev10020034m.g
Citrus clementina
Ciclev10020034m.g
I
0.851
orange1.1g013565m.g
Citrus sinensis
orange1.1g013565m.g
I
0.851
SapurV1A.0003s0340
Salix purpurea
SapurV1A.0003s0340
I
0.851
PK11025.1
Cannabis sativa
PK11025.1
I
0.851
Gorai.004G128200
Gossypium raimondii
Gorai.004G128200
N
0.850
SapurV1A.0666s0090
Salix purpurea
SapurV1A.0666s0090
I
0.843
BGIOSGA011738
Oryza indica
BGIOSGA011738
N
0.842
Bo8g097490
Brassica oleracea
Bo8g097490
N
0.842
Bra007646
Brassica rapa
Bra007646
N
0.842
Bra040478
Brassica rapa
Bra040478
I
0.842
MTR_8g023990
Medicago truncatula
MTR_8g023990
I
0.842
OB03G11610
Oryza brachyantha
OB03G11610
N
0.842
OBART03G01650
Oryza barthii
OBART03G01650
N
0.842
OGLUM03G01630
Oryza glumaepatula
OGLUM03G01630
N
0.842
OMERI03G01600
Oryza meridionalis
OMERI03G01600
N
0.842
ONIVA02G30750
Oryza nivara
ONIVA02G30750
N
0.842
OPUNC03G01540
Oryza punctata
OPUNC03G01540
N
0.842
ORGLA03G0014300
Oryza glaberrima
ORGLA03G0014300
N
0.842
OS03G0120900
Oryza sativa
OS03G0120900
N
0.842
POPTR_0002s18260
Populus trichocarpa
POPTR_0002s18260
N
0.842
POPTR_0014s10290
Populus trichocarpa
POPTR_0014s10290
I
0.842
Si036864m.g
Setaria italica
Si036864m.g
N
0.842
mgf023769m
Mimulus guttatus
mgf023769m
N
0.842
Bostr.25993s0080
Boechera stricta
Bostr.25993s0080
N
0.842
SapurV1A.0162s0420
Salix purpurea
SapurV1A.0162s0420
I
0.842
NGA1
Arabidopsis thaliana
AT2G46870
N
0.832
Bo3g039420
Brassica oleracea
Bo3g039420
N
0.832
Bo4g197410
Brassica oleracea
Bo4g197410
I
0.832
Bo6g079210
Brassica oleracea
Bo6g079210
N
0.832
fgenesh2_kg.181__3__AT2G46870.1
Arabidopsis lyrata
fgenesh2_kg.181__3__AT2G46870.1
N
0.832
fgenesh2_kg.4__2914__AT2G46870.1
Arabidopsis lyrata
fgenesh2_kg.4__2914__AT2G46870.1
N
0.832
GLYMA03G42301
Glycine max
GLYMA03G42301
I
0.832
GLYMA19G45090
Glycine max
GLYMA19G45090
I
0.832
LPERR03G01560
Leersia perrieri
LPERR03G01560
N
0.832
MTR_7g117455
Medicago truncatula
MTR_7g117455
I
0.832
OMERI10G13480
Oryza meridionalis
OMERI10G13480
N
0.832
Sb01g049150
Sorghum bicolor
Sb01g049150
N
0.832
Traes_4DL_A83084AC1
Triticum aestivum
Traes_4DL_A83084AC1
N
0.832
Cagra.0050s0013
Capsella grandiflora
Cagra.0050s0013
N
0.832
Carubv10023656m.g
Capsella rubella
Carubv10023656m.g
N
0.832
gene18594-v1.0-hybrid
Fragaria vesca
gene18594-v1.0-hybrid
I
0.832
Gorai.008G132400
Gossypium raimondii
Gorai.008G132400
I
0.832
Pavir.Ia04549
Panicum virgatum
Pavir.Ia04549
N
0.832
Pavir.Ib00059
Panicum virgatum
Pavir.Ib00059
N
0.832
Thhalv10001555m.g
Eutrema salsugineum
Thhalv10001555m.g
N
0.832
AMTR_s00018p00040300
Amborella trichopoda
AMTR_s00018p00040300
N
0.822
BGIOSGA031489
Oryza indica
BGIOSGA031489
N
0.822
Bo4g006900
Brassica oleracea
Bo4g006900
N
0.822
Bra000434
Brassica rapa
Bra000434
N
0.822
Bra004501
Brassica rapa
Bra004501
N
0.822
Bra014415
Brassica rapa
Bra014415
N
0.822
GSMUA_Achr1G03600_001
Musa acuminata
GSMUA_Achr1G03600_001
I
0.822
OBART10G17010
Oryza barthii
OBART10G17010
N
0.822
OGLUM10G17040
Oryza glumaepatula
OGLUM10G17040
N
0.822
ONIVA10G18740
Oryza nivara
ONIVA10G18740
N
0.822
OPUNC10G16940
Oryza punctata
OPUNC10G16940
N
0.822
ORGLA10G0119700
Oryza glaberrima
ORGLA10G0119700
N
0.822
ORUFI10G18030
Oryza rufipogon
ORUFI10G18030
N
0.822
OS10G0537100
Oryza sativa
OS10G0537100
N
0.822
Sb06g026370
Sorghum bicolor
Sb06g026370
N
0.822
Pavir.Ga00960
Panicum virgatum
Pavir.Ga00960
N
0.822
Pavir.J38226
Panicum virgatum
Pavir.J38226
N
0.822
Bo4g099000
Brassica oleracea
Bo4g099000
N
0.812
BRADI5G19260
Brachypodium distachyon
BRADI5G19260
I
0.812
GRMZM2G098443
Zea mays
GRMZM2G098443
N
0.812
GSMUA_Achr4G26430_001
Musa acuminata
GSMUA_Achr4G26430_001
I
0.812
LPERR04G18630
Leersia perrieri
LPERR04G18630
N
0.812
MLOC_66387
Hordeum vulgare
MLOC_66387
I
0.812
OB02G35380
Oryza brachyantha
OB02G35380
I
0.812
OBART04G22880
Oryza barthii
OBART04G22880
I
0.812
OGLUM04G22780
Oryza glumaepatula
OGLUM04G22780
I
0.812
ORGLA04G0198400
Oryza glaberrima
ORGLA04G0198400
I
0.812
OS04G0581400
Oryza sativa
OS04G0581400
I
0.812
Si011823m.g
Setaria italica
Si011823m.g
N
0.812
Traes_6AL_44AA5642C
Triticum aestivum
Traes_6AL_44AA5642C
I
0.812
Traes_6DL_359607E93
Triticum aestivum
Traes_6DL_359607E93
I
0.812
Ca_01368
Cicer arietinum
Ca_01368
I
0.812
Traes_2AL_41E2E66D9
Triticum aestivum
Traes_2AL_41E2E66D9
I
0.809
OB10G24100
Oryza brachyantha
OB10G24100
N
0.808
Cla014858
Citrullus lanatus
Cla014858
N
0.808
Cucsa.106780
Cucumis sativus
Cucsa.106780
N
0.808
TRIUR3_06598
Triticum urartu
TRIUR3_06598
N
0.804
BGIOSGA014498
Oryza indica
BGIOSGA014498
I
0.802
GRMZM2G018485
Zea mays
GRMZM2G018485
N
0.802
GRMZM2G102059
Zea mays
GRMZM2G102059
N
0.802
ONIVA04G22030
Oryza nivara
ONIVA04G22030
I
0.802
Si020241m.g
Setaria italica
Si020241m.g
N
0.802
Traes_2BL_439C794F5
Triticum aestivum
Traes_2BL_439C794F5
N
0.802
Pavir.Ab02711
Panicum virgatum
Pavir.Ab02711
I
0.802
AC216872.3_FG002
Zea mays
AC216872.3_FG002
N
0.800
NGA3
Arabidopsis thaliana
AT1G01030
N
0.792
BGIOSGA005835
Oryza indica
BGIOSGA005835
N
0.792
Bo3g001110
Brassica oleracea
Bo3g001110
N
0.792
Bo5g002790
Brassica oleracea
Bo5g002790
N
0.792
NGA3
Arabidopsis lyrata
fgenesh2_kg.1__134__AT1G01030.1
N
0.792
LPERR10G12990
Leersia perrieri
LPERR10G12990
N
0.792
OBART02G28100
Oryza barthii
OBART02G28100
N
0.792
OGLUM02G28660
Oryza glumaepatula
OGLUM02G28660
N
0.792
OMERI02G27240
Oryza meridionalis
OMERI02G27240
N
0.792
ONIVA12G15340
Oryza nivara
ONIVA12G15340
N
0.792
OPUNC02G25780
Oryza punctata
OPUNC02G25780
N
0.792
ORGLA02G0241100
Oryza glaberrima
ORGLA02G0241100
N
0.792
ORUFI02G29620
Oryza rufipogon
ORUFI02G29620
N
0.792
OS02G0683500
Oryza sativa
OS02G0683500
N
0.792
Bostr.5325s0023
Boechera stricta
Bostr.5325s0023
N
0.792
Cagra.1968s0048
Capsella grandiflora
Cagra.1968s0048
N
0.792
Carubv10009540m.g
Capsella rubella
Carubv10009540m.g
N
0.792
MDP0000138163
Malus domestica
MDP0000138163
N
0.792
Thhalv10008068m.g
Eutrema salsugineum
Thhalv10008068m.g
N
0.792
Bra030497
Brassica rapa
Bra030497
N
0.782
GSMUA_Achr5G20340_001
Musa acuminata
GSMUA_Achr5G20340_001
N
0.782
LPERR02G22870
Leersia perrieri
LPERR02G22870
I
0.782
Traes_4DL_D0F3E9568
Triticum aestivum
Traes_4DL_D0F3E9568
N
0.782
Bra033294
Brassica rapa
Bra033294
N
0.772
GRMZM2G024948
Zea mays
GRMZM2G024948
N
0.772
Sb04g031710
Sorghum bicolor
Sb04g031710
N
0.772
MDP0000288808
Malus domestica
MDP0000288808
N
0.772
Pavir.Aa00929
Panicum virgatum
Pavir.Aa00929
N
0.772
Pavir.J27608
Panicum virgatum
Pavir.J27608
N
0.768
Aquca_072_00063
Aquilegia coerulea
Aquca_072_00063
I
0.762
GRMZM2G142999
Zea mays
GRMZM2G142999
N
0.758
SELMODRAFT_59317
Selaginella moellendorffii
SELMODRAFT_59317
N
0.753
Traes_1AL_29F610E15
Triticum aestivum
Traes_1AL_29F610E15
N
0.752
TRIUR3_29732
Triticum urartu
TRIUR3_29732
N
0.752
OLONG_022770
Oryza longistaminata
OLONG_022770
N
0.750
Traes_2DL_2D1980C7B
Triticum aestivum
Traes_2DL_2D1980C7B
N
0.750
TCM_022729
Theobroma cacao
TCM_022729
N
0.747
Sb01g030520
Sorghum bicolor
Sb01g030520
N
0.745
MDP0000128295
Malus domestica
MDP0000128295
N
0.745
PGSC0003DMG400008936
Solanum tuberosum
PGSC0003DMG400008936
N
0.743
Solyc09g010230.1
Solanum lycopersicum
Solyc09g010230.1
N
0.743
Cagra.2117s0038
Capsella grandiflora
Cagra.2117s0038
I
0.743
Carubv10001689m.g
Capsella rubella
Carubv10001689m.g
I
0.743
Gorai.009G399000
Gossypium raimondii
Gorai.009G399000
N
0.743
MDP0000229742
Malus domestica
MDP0000229742
N
0.743
Pavir.J06582
Panicum virgatum
Pavir.J06582
N
0.743
Pavir.J35382
Panicum virgatum
Pavir.J35382
N
0.743
Traes_1BL_53C31B54B
Triticum aestivum
Traes_1BL_53C31B54B
I
0.741
GRMZM2G328742
Zea mays
GRMZM2G328742
N
0.740
PRUPE_ppa019539mg
Prunus persica
PRUPE_ppa019539mg
I
0.737
Traes_2BL_5ECD53274
Triticum aestivum
Traes_2BL_5ECD53274
N
0.737
AT5G06250
Arabidopsis thaliana
AT5G06250
N
0.733
fgenesh2_kg.6__566__AT5G06250.2
Arabidopsis lyrata
fgenesh2_kg.6__566__AT5G06250.2
N
0.733
GLYMA02G36090
Glycine max
GLYMA02G36090
I
0.733
MLOC_74058
Hordeum vulgare
MLOC_74058
N
0.733
Si039972m.g
Setaria italica
Si039972m.g
N
0.733
VIT_08s0007g02810
Vitis vinifera
VIT_08s0007g02810
N
0.733
mgf023686m
Mimulus guttatus
mgf023686m
I
0.733
Bostr.13129s0349
Boechera stricta
Bostr.13129s0349
N
0.733
MLOC_56530
Hordeum vulgare
MLOC_56530
N
0.727
Traes_2DL_2128A95BD
Triticum aestivum
Traes_2DL_2128A95BD
N
0.727
Ciclev10012008m.g
Citrus clementina
Ciclev10012008m.g
I
0.727
orange1.1g019261m.g
Citrus sinensis
orange1.1g019261m.g
I
0.727
Bo9g176470
Brassica oleracea
Bo9g176470
N
0.723
GLYMA10G08871
Glycine max
GLYMA10G08871
I
0.723
GSMUA_Achr6G13140_001
Musa acuminata
GSMUA_Achr6G13140_001
N
0.723
MLOC_38822
Hordeum vulgare
MLOC_38822
I
0.723
MTR_7g105370
Medicago truncatula
MTR_7g105370
N
0.723
ORUFI04G24570
Oryza rufipogon
ORUFI04G24570
I
0.723
POPTR_0016s07540
Populus trichocarpa
POPTR_0016s07540
N
0.723
Ca_25633
Cicer arietinum
Ca_25633
I
0.723
30032.m000462
Ricinus communis
30032.m000462
N
0.723
mgf019085m
Mimulus guttatus
mgf019085m
N
0.723
Lus10034276.g
Linum usitatissimum
Lus10034276.g
I
0.723
SapurV1A.0974s0140
Salix purpurea
SapurV1A.0974s0140
N
0.723
SapurV1A.1586s0010
Salix purpurea
SapurV1A.1586s0010
N
0.723
Thhalv10015675m.g
Eutrema salsugineum
Thhalv10015675m.g
I
0.723
PK04952.1
Cannabis sativa
PK04952.1
I
0.723
BRADI4G42167
Brachypodium distachyon
BRADI4G42167
N
0.717
AMTR_s00114p00142630
Amborella trichopoda
AMTR_s00114p00142630
I
0.714
MLOC_44012
Hordeum vulgare
MLOC_44012
I
0.714
TRIUR3_24950
Triticum urartu
TRIUR3_24950
I
0.714
AT3G11580
Arabidopsis thaliana
AT3G11580
N
0.713
MTR_1g058350
Medicago truncatula
MTR_1g058350
N
0.713
OMERI12G01740
Oryza meridionalis
OMERI12G01740
N
0.713
scaffold_301330.1
Arabidopsis lyrata
scaffold_301330.1
N
0.713
Traes_5BL_B98E347A8
Triticum aestivum
Traes_5BL_B98E347A8
N
0.713
Traes_5DL_CACDF70D6
Triticum aestivum
Traes_5DL_CACDF70D6
N
0.713
Cla017937
Citrullus lanatus
Cla017937
I
0.713
cassava19218.valid.m1
Manihot esculenta
cassava19218.valid.m1
N
0.713
Bostr.19424s1090
Boechera stricta
Bostr.19424s1090
N
0.713
Cagra.1655s0012
Capsella grandiflora
Cagra.1655s0012
N
0.713
Carubv10014376m.g
Capsella rubella
Carubv10014376m.g
N
0.713
evm.TU.contig_29173.1
Carica papaya
evm.TU.contig_29173.1
I
0.713
gene15627-v1.0-hybrid
Fragaria vesca
gene15627-v1.0-hybrid
I
0.713
Pavir.Ca00165
Panicum virgatum
Pavir.Ca00165
N
0.713
Pavir.Cb02052
Panicum virgatum
Pavir.Cb02052
N
0.713
Thhalv10021305m.g
Eutrema salsugineum
Thhalv10021305m.g
N
0.713
OLONG_000415
Oryza longistaminata
OLONG_000415
I
0.711
Bo3g003800
Brassica oleracea
Bo3g003800
N
0.703
Bo3g064320
Brassica oleracea
Bo3g064320
N
0.703
Bra001411
Brassica rapa
Bra001411
N
0.703
Bra005886
Brassica rapa
Bra005886
N
0.703
GRMZM2G125095
Zea mays
GRMZM2G125095
N
0.703
OB12G13420
Oryza brachyantha
OB12G13420
N
0.703
OPUNC12G03300
Oryza punctata
OPUNC12G03300
N
0.703
POPTR_0006s22460
Populus trichocarpa
POPTR_0006s22460
N
0.703
Si027632m.g
Setaria italica
Si027632m.g
N
0.703
Traes_1BL_B8B4C1FB6
Triticum aestivum
Traes_1BL_B8B4C1FB6
I
0.703
Ca_00826
Cicer arietinum
Ca_00826
N
0.703
cassava3990.m1
Manihot esculenta
cassava3990.m1
N
0.703
Cucsa.241440
Cucumis sativus
Cucsa.241440
I
0.703
Cagra.11546s0001
Capsella grandiflora
Cagra.11546s0001
I
0.703
Carubv10010429m.g
Capsella rubella
Carubv10010429m.g
I
0.703
Eucgr.A02625
Eucalyptus grandis
Eucgr.A02625
N
0.703
Gorai.002G237900
Gossypium raimondii
Gorai.002G237900
I
0.703
SapurV1A.1211s0020
Salix purpurea
SapurV1A.1211s0020
N
0.703