CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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cassava11454.m1
(
Manihot esculenta
)
B3
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02362 (B3)
IPR003340
cassava11454.m1
T022215_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
cassava11454.m1
B3
76
177
FCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVASDLHGNSWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRL
cassava11454.m1
B3
422
466
KLEDMFDIEGELSGSTKKWQVVYTDDEDDMMMVGDDPWHEFCSMV
Links
Other
B3
family TFs
Other
Manihot esculenta
TFs
72 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
cassava11453.m1
Manihot esculenta
cassava11453.m1
N
1.000
cassava11455.m1
Manihot esculenta
cassava11455.m1
N
1.000
cassava11456.m1
Manihot esculenta
cassava11456.m1
N
1.000
cassava7098.valid.m1
Manihot esculenta
cassava7098.valid.m1
N
1.000
cassava7099.valid.m1
Manihot esculenta
cassava7099.valid.m1
N
1.000
GLYMA07G40270
Glycine max
GLYMA07G40270
N
0.925
Lus10024455.g
Linum usitatissimum
Lus10024455.g
N
0.918
Eucgr.G00076
Eucalyptus grandis
Eucgr.G00076
I
0.906
Cla001927
Citrullus lanatus
Cla001927
N
0.904
Cucsa.183410
Cucumis sativus
Cucsa.183410
N
0.904
TCM_027113
Theobroma cacao
TCM_027113
I
0.903
29609.m000587
Ricinus communis
29609.m000587
N
0.899
Ciclev10000491m.g
Citrus clementina
Ciclev10000491m.g
N
0.891
Lus10007440.g
Linum usitatissimum
Lus10007440.g
N
0.884
GLYMA12G28550
Glycine max
GLYMA12G28550
N
0.870
SapurV1A.0422s0040
Salix purpurea
SapurV1A.0422s0040
I
0.866
Gorai.011G091100
Gossypium raimondii
Gorai.011G091100
N
0.865
mgf006427m
Mimulus guttatus
mgf006427m
N
0.859
PRUPE_ppa002394mg
Prunus persica
PRUPE_ppa002394mg
N
0.856
SapurV1A.0225s0120
Salix purpurea
SapurV1A.0225s0120
N
0.851
POPTR_0003s00890
Populus trichocarpa
POPTR_0003s00890
N
0.848
Solyc01g103050.2
Solanum lycopersicum
Solyc01g103050.2
N
0.836
PGSC0003DMG400020711
Solanum tuberosum
PGSC0003DMG400020711
I
0.834
Cagra.0996s0001
Capsella grandiflora
Cagra.0996s0001
N
0.833
Carubv10022415m.g
Capsella rubella
Carubv10022415m.g
N
0.833
Bo4g083590
Brassica oleracea
Bo4g083590
N
0.830
gene29255-v1.0-hybrid
Fragaria vesca
gene29255-v1.0-hybrid
N
0.825
Thhalv10023326m.g
Eutrema salsugineum
Thhalv10023326m.g
N
0.819
Bo1g090350
Brassica oleracea
Bo1g090350
N
0.815
Bra035427
Brassica rapa
Bra035427
N
0.815
OGLUM02G20880
Oryza glumaepatula
OGLUM02G20880
N
0.815
OBART02G20600
Oryza barthii
OBART02G20600
N
0.809
OLONG_012362
Oryza longistaminata
OLONG_012362
N
0.809
OMERI02G20310
Oryza meridionalis
OMERI02G20310
N
0.809
ONIVA02G22590
Oryza nivara
ONIVA02G22590
N
0.809
ORUFI02G21640
Oryza rufipogon
ORUFI02G21640
N
0.809
ARF7
Oryza sativa
OS02G0557200
N
0.809
Bostr.10040s0256
Boechera stricta
Bostr.10040s0256
N
0.808
ARF1
Arabidopsis thaliana
AT1G59750
N
0.807
ARF1
Arabidopsis lyrata
fgenesh2_kg.2__468__AT1G59750.1
N
0.805
BGIOSGA008429
Oryza indica
BGIOSGA008429
N
0.803
OPUNC02G18520
Oryza punctata
OPUNC02G18520
N
0.803
ORGLA02G0176700
Oryza glaberrima
ORGLA02G0176700
N
0.803
Sb04g022830
Sorghum bicolor
Sb04g022830
N
0.788
Traes_2DL_A86E54838
Triticum aestivum
Traes_2DL_A86E54838
N
0.768
MLOC_64596
Hordeum vulgare
MLOC_64596
I
0.759
29742.m001397
Ricinus communis
29742.m001397
N
0.759
Traes_2AL_89543BA1A
Triticum aestivum
Traes_2AL_89543BA1A
N
0.757
TRIUR3_33501
Triticum urartu
TRIUR3_33501
N
0.757
VIT_18s0089g00910
Vitis vinifera
VIT_18s0089g00910
N
0.757
BRADI4G17410
Brachypodium distachyon
BRADI4G17410
I
0.731
AMTR_s00021p00221770
Amborella trichopoda
AMTR_s00021p00221770
N
0.719
POPTR_0004s23770
Populus trichocarpa
POPTR_0004s23770
I
0.714
ARF1
Vitis vinifera
VIT_12s0035g01800
I
0.714
MDP0000929655
Malus domestica
MDP0000929655
I
0.714
PK12669.1
Cannabis sativa
PK12669.1
I
0.714
Pm003827
Prunus mume
Pm003827
N
0.709
GLYMA16G00220
Glycine max
GLYMA16G00220
I
0.707
MTR_2g005240
Medicago truncatula
MTR_2g005240
I
0.707
LjSGA_022281.1
Lotus japonicus
LjSGA_022281.1
I
0.707
mgf024961m
Mimulus guttatus
mgf024961m
N
0.706
GSMUA_Achr6G16450_001
Musa acuminata
GSMUA_Achr6G16450_001
N
0.704
BGIOSGA036199
Oryza indica
BGIOSGA036199
N
0.702
OBART12G11990
Oryza barthii
OBART12G11990
N
0.702
OGLUM12G13560
Oryza glumaepatula
OGLUM12G13560
N
0.702
OLONG_019549
Oryza longistaminata
OLONG_019549
N
0.702
OMERI12G08550
Oryza meridionalis
OMERI12G08550
N
0.702
ONIVA12G12070
Oryza nivara
ONIVA12G12070
N
0.702
OPUNC12G10620
Oryza punctata
OPUNC12G10620
N
0.702
ORGLA12G0109100
Oryza glaberrima
ORGLA12G0109100
N
0.702
ORUFI12G13110
Oryza rufipogon
ORUFI12G13110
N
0.702
ARF24
Oryza sativa
OS12G0479400
N
0.702