CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Carubv10014376m.g
(
Capsella rubella
)
B3
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02362 (B3)
IPR003340
Carubv10014376m.g
T022866_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10014376m
B3
36
152
FEKSLTPSDVGKLNRLVIPKQHAEKYFALSNNNNNGGGGGGDDVATTEKGMLLSFEDESGKCWKFRYSYWNSSQSYVLTKGWSRYVKDKHLDAGDVVFFQRHRFDLQRLFIGWRRRG
Links
Other
B3
family TFs
Other
Capsella rubella
TFs
238 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AMTR_s00114p00142630
Amborella trichopoda
AMTR_s00114p00142630
I
0.714
BGIOSGA014498
Oryza indica
BGIOSGA014498
I
0.733
Bo4g197410
Brassica oleracea
Bo4g197410
I
0.713
Bra040478
Brassica rapa
Bra040478
I
0.733
BRADI5G19260
Brachypodium distachyon
BRADI5G19260
I
0.733
GLYMA02G36090
Glycine max
GLYMA02G36090
I
0.861
GLYMA03G42301
Glycine max
GLYMA03G42301
I
0.733
GLYMA07G05381
Glycine max
GLYMA07G05381
I
0.713
GLYMA10G08871
Glycine max
GLYMA10G08871
I
0.851
GLYMA16G01951
Glycine max
GLYMA16G01951
I
0.713
GLYMA19G45090
Glycine max
GLYMA19G45090
I
0.723
GSMUA_Achr9G02600_001
Musa acuminata
GSMUA_Achr9G02600_001
I
0.703
LPERR02G22870
Leersia perrieri
LPERR02G22870
I
0.703
MLOC_66387
Hordeum vulgare
MLOC_66387
I
0.713
MTR_7g117455
Medicago truncatula
MTR_7g117455
I
0.713
MTR_8g023990
Medicago truncatula
MTR_8g023990
I
0.733
OB02G35380
Oryza brachyantha
OB02G35380
I
0.713
OBART04G22880
Oryza barthii
OBART04G22880
I
0.733
OGLUM04G22780
Oryza glumaepatula
OGLUM04G22780
I
0.733
ONIVA04G22030
Oryza nivara
ONIVA04G22030
I
0.733
ORGLA04G0198400
Oryza glaberrima
ORGLA04G0198400
I
0.733
OS04G0581400
Oryza sativa
OS04G0581400
I
0.733
PGSC0003DMG400005856
Solanum tuberosum
PGSC0003DMG400005856
I
0.703
PGSC0003DMG400005857
Solanum tuberosum
PGSC0003DMG400005857
I
0.703
PGSC0003DMG400012222
Solanum tuberosum
PGSC0003DMG400012222
I
0.743
POPTR_0001s45650
Populus trichocarpa
POPTR_0001s45650
I
0.713
POPTR_0011s15270
Populus trichocarpa
POPTR_0011s15270
I
0.723
POPTR_0014s10290
Populus trichocarpa
POPTR_0014s10290
I
0.713
PRUPE_ppa019131mg
Prunus persica
PRUPE_ppa019131mg
I
0.743
PRUPE_ppa019539mg
Prunus persica
PRUPE_ppa019539mg
I
0.808
Solyc08g013690.1
Solanum lycopersicum
Solyc08g013690.1
I
0.713
Solyc08g013700.1
Solanum lycopersicum
Solyc08g013700.1
I
0.713
Solyc08g083400.2
Solanum lycopersicum
Solyc08g083400.2
I
0.733
TCM_005014
Theobroma cacao
TCM_005014
I
0.733
TCM_015590
Theobroma cacao
TCM_015590
I
0.752
Traes_1BL_53C31B54B
Triticum aestivum
Traes_1BL_53C31B54B
I
0.741
Traes_2AL_41E2E66D9
Triticum aestivum
Traes_2AL_41E2E66D9
I
0.764
Traes_2DL_896E50180
Triticum aestivum
Traes_2DL_896E50180
I
0.821
Traes_6AL_44AA5642C
Triticum aestivum
Traes_6AL_44AA5642C
I
0.713
Traes_6DL_359607E93
Triticum aestivum
Traes_6DL_359607E93
I
0.713
TRIUR3_24950
Triticum urartu
TRIUR3_24950
I
0.771
VIT_02s0025g03000
Vitis vinifera
VIT_02s0025g03000
I
0.733
Ca_25633
Cicer arietinum
Ca_25633
I
0.842
Cla017937
Citrullus lanatus
Cla017937
I
0.792
Pm024248
Prunus mume
Pm024248
I
0.743
30068.m002615
Ricinus communis
30068.m002615
I
0.713
30076.m004471
Ricinus communis
30076.m004471
I
0.723
cassava29779.valid.m1
Manihot esculenta
cassava29779.valid.m1
I
0.713
cassava36125.valid.m1
Manihot esculenta
cassava36125.valid.m1
I
0.713
Cucsa.241440
Cucumis sativus
Cucsa.241440
I
0.782
Aquca_037_00291
Aquilegia coerulea
Aquca_037_00291
I
0.703
Aquca_072_00063
Aquilegia coerulea
Aquca_072_00063
I
0.772
Cagra.2117s0038
Capsella grandiflora
Cagra.2117s0038
I
0.871
Carubv10001689m.g
Capsella rubella
Carubv10001689m.g
I
0.871
Ciclev10012008m.g
Citrus clementina
Ciclev10012008m.g
I
0.848
Ciclev10020034m.g
Citrus clementina
Ciclev10020034m.g
I
0.743
Ciclev10020450m.g
Citrus clementina
Ciclev10020450m.g
I
0.733
Eucgr.E01093
Eucalyptus grandis
Eucgr.E01093
I
0.703
Eucgr.L00348
Eucalyptus grandis
Eucgr.L00348
I
0.743
evm.TU.contig_29173.1
Carica papaya
evm.TU.contig_29173.1
I
0.832
evm.TU.supercontig_37.108
Carica papaya
evm.TU.supercontig_37.108
I
0.723
evm.TU.supercontig_57.71
Carica papaya
evm.TU.supercontig_57.71
I
0.723
gene01855-v1.0-hybrid
Fragaria vesca
gene01855-v1.0-hybrid
I
0.733
gene15627-v1.0-hybrid
Fragaria vesca
gene15627-v1.0-hybrid
I
0.822
gene18594-v1.0-hybrid
Fragaria vesca
gene18594-v1.0-hybrid
I
0.713
Gorai.001G150200
Gossypium raimondii
Gorai.001G150200
I
0.723
Gorai.002G237900
Gossypium raimondii
Gorai.002G237900
I
0.812
Gorai.003G073600
Gossypium raimondii
Gorai.003G073600
I
0.743
Gorai.007G114200
Gossypium raimondii
Gorai.007G114200
I
0.723
Gorai.008G261100
Gossypium raimondii
Gorai.008G261100
I
0.723
orange1.1g013565m.g
Citrus sinensis
orange1.1g013565m.g
I
0.743
orange1.1g015743m.g
Citrus sinensis
orange1.1g015743m.g
I
0.733
orange1.1g019261m.g
Citrus sinensis
orange1.1g019261m.g
I
0.848
SapurV1A.0003s0340
Salix purpurea
SapurV1A.0003s0340
I
0.723
SapurV1A.0162s0420
Salix purpurea
SapurV1A.0162s0420
I
0.713
SapurV1A.0285s0040
Salix purpurea
SapurV1A.0285s0040
I
0.733
SapurV1A.0666s0090
Salix purpurea
SapurV1A.0666s0090
I
0.771
Thhalv10015675m.g
Eutrema salsugineum
Thhalv10015675m.g
I
0.881
PK04952.1
Cannabis sativa
PK04952.1
I
0.812
PK11025.1
Cannabis sativa
PK11025.1
I
0.752
chr1.CM0105.800.nc
Lotus japonicus
chr1.CM0105.800.nc
I
0.733
LjT15D16.50.nc
Lotus japonicus
LjT15D16.50.nc
I
0.733
AMTR_s00018p00040300
Amborella trichopoda
AMTR_s00018p00040300
N
0.703
ARF31
Arabidopsis thaliana
AT2G36080
N
0.812
NGA1
Arabidopsis thaliana
AT2G46870
N
0.713
AT3G11580
Arabidopsis thaliana
AT3G11580
N
0.990
AT5G06250
Arabidopsis thaliana
AT5G06250
N
0.881
BGIOSGA005835
Oryza indica
BGIOSGA005835
N
0.703
BGIOSGA011738
Oryza indica
BGIOSGA011738
N
0.743
BGIOSGA034469
Oryza indica
BGIOSGA034469
N
0.743
BGIOSGA036599
Oryza indica
BGIOSGA036599
N
0.723
Bo01079s020
Brassica oleracea
Bo01079s020
N
0.812
Bo3g003800
Brassica oleracea
Bo3g003800
N
0.861
Bo3g039420
Brassica oleracea
Bo3g039420
N
0.713
Bo3g064320
Brassica oleracea
Bo3g064320
N
0.931
Bo4g006900
Brassica oleracea
Bo4g006900
N
0.723
Bo4g035110
Brassica oleracea
Bo4g035110
N
0.792
Bo5g136360
Brassica oleracea
Bo5g136360
N
0.891
Bo6g079210
Brassica oleracea
Bo6g079210
N
0.713
Bo9g176470
Brassica oleracea
Bo9g176470
N
0.871
Bra000434
Brassica rapa
Bra000434
N
0.713
Bra001411
Brassica rapa
Bra001411
N
0.941
Bra003482
Brassica rapa
Bra003482
N
0.703
Bra004501
Brassica rapa
Bra004501
N
0.723
Bra005301
Brassica rapa
Bra005301
N
0.792
Bra005886
Brassica rapa
Bra005886
N
0.871
Bra017262
Brassica rapa
Bra017262
N
0.812
Bra034828
Brassica rapa
Bra034828
N
0.891
Bra041023
Brassica rapa
Bra041023
N
0.911
BRADI4G25170
Brachypodium distachyon
BRADI4G25170
N
0.752
BRADI4G42167
Brachypodium distachyon
BRADI4G42167
N
0.778
F775_02500
Aegilops tauschii
F775_02500
N
0.752
fgenesh2_kg.181__3__AT2G46870.1
Arabidopsis lyrata
fgenesh2_kg.181__3__AT2G46870.1
N
0.713
fgenesh2_kg.4__2914__AT2G46870.1
Arabidopsis lyrata
fgenesh2_kg.4__2914__AT2G46870.1
N
0.713
fgenesh2_kg.6__566__AT5G06250.2
Arabidopsis lyrata
fgenesh2_kg.6__566__AT5G06250.2
N
0.881
GLYMA03G35700
Glycine max
GLYMA03G35700
N
0.782
GLYMA19G38340
Glycine max
GLYMA19G38340
N
0.782
GRMZM2G018485
Zea mays
GRMZM2G018485
N
0.733
GRMZM2G024948
Zea mays
GRMZM2G024948
N
0.713
GRMZM2G082227
Zea mays
GRMZM2G082227
N
0.703
GRMZM2G098443
Zea mays
GRMZM2G098443
N
0.723
GRMZM2G102059
Zea mays
GRMZM2G102059
N
0.733
GRMZM2G328742
Zea mays
GRMZM2G328742
N
0.720
GRMZM5G805685
Zea mays
GRMZM5G805685
N
0.713
GSMUA_Achr3G19210_001
Musa acuminata
GSMUA_Achr3G19210_001
N
0.733
GSMUA_Achr6G13140_001
Musa acuminata
GSMUA_Achr6G13140_001
N
0.762
GSMUA_Achr6G35600_001
Musa acuminata
GSMUA_Achr6G35600_001
N
0.762
LPERR03G01560
Leersia perrieri
LPERR03G01560
N
0.723
LPERR04G18630
Leersia perrieri
LPERR04G18630
N
0.733
LPERR12G03290
Leersia perrieri
LPERR12G03290
N
0.733
MLOC_11014
Hordeum vulgare
MLOC_11014
N
0.762
MLOC_56530
Hordeum vulgare
MLOC_56530
N
0.768
MTR_1g058350
Medicago truncatula
MTR_1g058350
N
0.832
MTR_7g105370
Medicago truncatula
MTR_7g105370
N
0.832
OB03G11610
Oryza brachyantha
OB03G11610
N
0.743
OB11G12920
Oryza brachyantha
OB11G12920
N
0.733
OB12G13420
Oryza brachyantha
OB12G13420
N
0.782
OBART02G28100
Oryza barthii
OBART02G28100
N
0.703
OBART03G01650
Oryza barthii
OBART03G01650
N
0.743
OBART11G03590
Oryza barthii
OBART11G03590
N
0.743
OBART12G03490
Oryza barthii
OBART12G03490
N
0.723
OGLUM02G28660
Oryza glumaepatula
OGLUM02G28660
N
0.703
OGLUM03G01630
Oryza glumaepatula
OGLUM03G01630
N
0.743
OGLUM11G03240
Oryza glumaepatula
OGLUM11G03240
N
0.743
OGLUM12G04180
Oryza glumaepatula
OGLUM12G04180
N
0.723
OLONG_005139
Oryza longistaminata
OLONG_005139
N
0.743
OMERI02G27240
Oryza meridionalis
OMERI02G27240
N
0.703
OMERI03G01600
Oryza meridionalis
OMERI03G01600
N
0.743
OMERI11G03310
Oryza meridionalis
OMERI11G03310
N
0.743
OMERI12G01740
Oryza meridionalis
OMERI12G01740
N
0.782
ONIVA02G30750
Oryza nivara
ONIVA02G30750
N
0.743
ONIVA07G22860
Oryza nivara
ONIVA07G22860
N
0.743
ONIVA12G03130
Oryza nivara
ONIVA12G03130
N
0.723
ONIVA12G15340
Oryza nivara
ONIVA12G15340
N
0.703
OPUNC02G25780
Oryza punctata
OPUNC02G25780
N
0.703
OPUNC03G01540
Oryza punctata
OPUNC03G01540
N
0.743
OPUNC11G03320
Oryza punctata
OPUNC11G03320
N
0.733
OPUNC12G03300
Oryza punctata
OPUNC12G03300
N
0.782
ORGLA02G0241100
Oryza glaberrima
ORGLA02G0241100
N
0.703
ORGLA03G0014300
Oryza glaberrima
ORGLA03G0014300
N
0.743
ORGLA11G0033600
Oryza glaberrima
ORGLA11G0033600
N
0.743
ORGLA12G0033700
Oryza glaberrima
ORGLA12G0033700
N
0.723
ORUFI02G29620
Oryza rufipogon
ORUFI02G29620
N
0.703
ORUFI11G03500
Oryza rufipogon
ORUFI11G03500
N
0.743
ORUFI12G03970
Oryza rufipogon
ORUFI12G03970
N
0.723
OS02G0683500
Oryza sativa
OS02G0683500
N
0.703
OS03G0120900
Oryza sativa
OS03G0120900
N
0.743
OS11G0156000
Oryza sativa
OS11G0156000
N
0.743
PGSC0003DMG400008936
Solanum tuberosum
PGSC0003DMG400008936
N
0.812
PGSC0003DMG400028159
Solanum tuberosum
PGSC0003DMG400028159
N
0.792
POPTR_0002s18260
Populus trichocarpa
POPTR_0002s18260
N
0.713
POPTR_0006s22460
Populus trichocarpa
POPTR_0006s22460
N
0.832
POPTR_0016s07540
Populus trichocarpa
POPTR_0016s07540
N
0.822
Sb01g049150
Sorghum bicolor
Sb01g049150
N
0.743
Sb04g031710
Sorghum bicolor
Sb04g031710
N
0.713
Sb05g003450
Sorghum bicolor
Sb05g003450
N
0.752
Sb06g026370
Sorghum bicolor
Sb06g026370
N
0.733
scaffold_301330.1
Arabidopsis lyrata
scaffold_301330.1
N
0.990
scaffold_402221.1
Arabidopsis lyrata
scaffold_402221.1
N
0.802
Si011823m.g
Setaria italica
Si011823m.g
N
0.733
Si027632m.g
Setaria italica
Si027632m.g
N
0.752
Si036864m.g
Setaria italica
Si036864m.g
N
0.743
Solyc09g010230.1
Solanum lycopersicum
Solyc09g010230.1
N
0.822
Solyc10g083210.1
Solanum lycopersicum
Solyc10g083210.1
N
0.792
TCM_022729
Theobroma cacao
TCM_022729
N
0.848
Traes_2BL_439C794F5
Triticum aestivum
Traes_2BL_439C794F5
N
0.733
Traes_2BL_5ECD53274
Triticum aestivum
Traes_2BL_5ECD53274
N
0.758
Traes_2DL_2128A95BD
Triticum aestivum
Traes_2DL_2128A95BD
N
0.737
Traes_4AL_4F2E6EF28
Triticum aestivum
Traes_4AL_4F2E6EF28
N
0.752
Traes_4BL_D9784B20C1
Triticum aestivum
Traes_4BL_D9784B20C1
N
0.723
Traes_4BS_5FECB39FA
Triticum aestivum
Traes_4BS_5FECB39FA
N
0.752
Traes_4DL_A83084AC1
Triticum aestivum
Traes_4DL_A83084AC1
N
0.733
Traes_4DS_E6210A614
Triticum aestivum
Traes_4DS_E6210A614
N
0.752
Traes_5BL_B98E347A8
Triticum aestivum
Traes_5BL_B98E347A8
N
0.743
Traes_5DL_CACDF70D6
Triticum aestivum
Traes_5DL_CACDF70D6
N
0.743
VIT_08s0007g02810
Vitis vinifera
VIT_08s0007g02810
N
0.812
Ca_00826
Cicer arietinum
Ca_00826
N
0.812
Cla014858
Citrullus lanatus
Cla014858
N
0.737
30032.m000462
Ricinus communis
30032.m000462
N
0.832
cassava19218.valid.m1
Manihot esculenta
cassava19218.valid.m1
N
0.822
cassava3990.m1
Manihot esculenta
cassava3990.m1
N
0.802
Cucsa.106780
Cucumis sativus
Cucsa.106780
N
0.747
mgf018965m
Mimulus guttatus
mgf018965m
N
0.768
mgf019085m
Mimulus guttatus
mgf019085m
N
0.772
mgf023769m
Mimulus guttatus
mgf023769m
N
0.733
Bostr.13129s0349
Boechera stricta
Bostr.13129s0349
N
0.871
Bostr.19424s1090
Boechera stricta
Bostr.19424s1090
N
0.990
Bostr.23794s0488
Boechera stricta
Bostr.23794s0488
N
0.822
Bostr.25993s0080
Boechera stricta
Bostr.25993s0080
N
0.723
Cagra.0050s0013
Capsella grandiflora
Cagra.0050s0013
N
0.713
Cagra.0993s0119
Capsella grandiflora
Cagra.0993s0119
N
0.812
Cagra.1655s0012
Capsella grandiflora
Cagra.1655s0012
N
1.000
Carubv10023656m.g
Capsella rubella
Carubv10023656m.g
N
0.713
Carubv10023925m.g
Capsella rubella
Carubv10023925m.g
N
0.812
Eucgr.A02625
Eucalyptus grandis
Eucgr.A02625
N
0.782
Gorai.004G128200
Gossypium raimondii
Gorai.004G128200
N
0.720
Gorai.006G152400
Gossypium raimondii
Gorai.006G152400
N
0.782
Gorai.009G399000
Gossypium raimondii
Gorai.009G399000
N
0.832
Lus10004226.g
Linum usitatissimum
Lus10004226.g
N
0.733
Lus10021326.g
Linum usitatissimum
Lus10021326.g
N
0.782
MDP0000229742
Malus domestica
MDP0000229742
N
0.772
Pavir.Aa00929
Panicum virgatum
Pavir.Aa00929
N
0.713
Pavir.Ca00165
Panicum virgatum
Pavir.Ca00165
N
0.762
Pavir.Cb02052
Panicum virgatum
Pavir.Cb02052
N
0.762
Pavir.Ga00960
Panicum virgatum
Pavir.Ga00960
N
0.733
Pavir.Ha01761
Panicum virgatum
Pavir.Ha01761
N
0.743
Pavir.Hb01814
Panicum virgatum
Pavir.Hb01814
N
0.752
Pavir.Ia04549
Panicum virgatum
Pavir.Ia04549
N
0.733
Pavir.Ib00059
Panicum virgatum
Pavir.Ib00059
N
0.733
Pavir.J27608
Panicum virgatum
Pavir.J27608
N
0.716
Pavir.J38226
Panicum virgatum
Pavir.J38226
N
0.733
SapurV1A.0974s0140
Salix purpurea
SapurV1A.0974s0140
N
0.832
SapurV1A.1211s0020
Salix purpurea
SapurV1A.1211s0020
N
0.832
SapurV1A.1586s0010
Salix purpurea
SapurV1A.1586s0010
N
0.832
Thhalv10001555m.g
Eutrema salsugineum
Thhalv10001555m.g
N
0.723
Thhalv10017156m.g
Eutrema salsugineum
Thhalv10017156m.g
N
0.812
Thhalv10021305m.g
Eutrema salsugineum
Thhalv10021305m.g
N
0.960
LjSGA_011266.1
Lotus japonicus
LjSGA_011266.1
N
0.792