CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Carubv10016313m.g
(
Capsella rubella
)
B3
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02362 (B3)
IPR003340
Carubv10016313m.g
T022878_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10016313m
B3
200
317
FEKTLFVTDVNPTQNRLSMPFNNLLRNDFLTPVESRIIDEDINNNKKIGVGAILVDQWSKKWGVMLKRWEMKKDSGRGSWNYNLICGWNDIVEANGLKDGDKITLWSFRCCGILCFAM
Links
Other
B3
family TFs
Other
Capsella rubella
TFs
6 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Al_scaffold_0003_2791
Arabidopsis lyrata
Al_scaffold_0003_2791
N
0.865
AT5G24050
Arabidopsis thaliana
AT5G24050
N
0.875
Bostr.19424s0112
Boechera stricta
Bostr.19424s0112
N
0.854
Cagra.0139s0005
Capsella grandiflora
Cagra.0139s0005
N
0.938
fgenesh2_kg.3__2702__AT3G24850.1
Arabidopsis lyrata
fgenesh2_kg.3__2702__AT3G24850.1
N
0.865
scaffold_303024.1
Arabidopsis lyrata
scaffold_303024.1
N
0.823