evm.TU.supercontig_62.76 (Carica papaya)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 evm.TU.supercontig_62.76 T023146_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VRN1
M06704_2.00 		Arabidopsis thaliana
WWWTTTTTTTTTTTTTTTTTTTTTTTKTN
NAMAAAAAAAAAAAAAAAAAAAAAAAWWW		 Dap-seq
OMalley et al.(2016)
VRN1_col_a 		0.825 0.825
VRN1
M06705_2.00 		Arabidopsis thaliana
NWBNTTTTTTTTTTTTKKB
VMMAAAAAAAAAAAANVWN		 Dap-seq
OMalley et al.(2016)
VRN1_colamp_a 		0.825 0.825
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
evm.model.supercontig_62.76 B3 5 75
evm.model.supercontig_62.76 B3 229 323

Links

Other B3 family TFs
Other Carica papaya TFs

16 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TCM_006971 Theobroma cacao TCM_006971 I 0.750
Ciclev10028642m.g Citrus clementina Ciclev10028642m.g I 0.743
VRN1 Arabidopsis thaliana AT3G18990 D 0.725
VRN1 Arabidopsis lyrata fgenesh2_kg.3__2116__AT3G18990.1 I 0.725
Bostr.19424s0762 Boechera stricta Bostr.19424s0762 I 0.725
Cagra.5105s0003 Capsella grandiflora Cagra.5105s0003 I 0.725
Carubv10015637m.g Capsella rubella Carubv10015637m.g I 0.725
Gorai.005G240900 Gossypium raimondii Gorai.005G240900 I 0.725
Thhalv10021075m.g Eutrema salsugineum Thhalv10021075m.g I 0.725
Gorai.002G006500 Gossypium raimondii Gorai.002G006500 I 0.723
Bo1g115980 Brassica oleracea Bo1g115980 I 0.720
Bo5g116790 Brassica oleracea Bo5g116790 I 0.720
Bra037544 Brassica rapa Bra037544 I 0.720
Gorai.012G150900 Gossypium raimondii Gorai.012G150900 I 0.714
Gorai.013G040000 Gossypium raimondii Gorai.013G040000 I 0.714
Bra022376 Brassica rapa Bra022376 I 0.704