Pavir.Ba00654 (Panicum virgatum)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 Pavir.Ba00654 T023787_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ba00654.1.p B3 384 485

Links

Other B3 family TFs
Other Panicum virgatum TFs

184 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GRMZM2G008356 Zea mays GRMZM2G008356 N 0.960
Sb02g036430 Sorghum bicolor Sb02g036430 N 0.960
Si028829m.g Setaria italica Si028829m.g N 0.960
Pavir.Bb03074 Panicum virgatum Pavir.Bb03074 N 0.960
BGIOSGA025947 Oryza indica BGIOSGA025947 N 0.939
GSMUA_Achr7G00120_001 Musa acuminata GSMUA_Achr7G00120_001 N 0.939
LPERR07G16110 Leersia perrieri LPERR07G16110 N 0.939
OBART07G18780 Oryza barthii OBART07G18780 N 0.939
OGLUM07G18530 Oryza glumaepatula OGLUM07G18530 N 0.939
OLONG_013183 Oryza longistaminata OLONG_013183 N 0.939
OMERI07G15550 Oryza meridionalis OMERI07G15550 N 0.939
ONIVA07G17160 Oryza nivara ONIVA07G17160 N 0.939
OPUNC07G17640 Oryza punctata OPUNC07G17640 N 0.939
ORGLA07G0151800 Oryza glaberrima ORGLA07G0151800 N 0.939
ORUFI07G19520 Oryza rufipogon ORUFI07G19520 N 0.939
Cucsa.045980 Cucumis sativus Cucsa.045980 N 0.939
orange1.1g002489m.g Citrus sinensis orange1.1g002489m.g N 0.938
BRADI1G24720 Brachypodium distachyon BRADI1G24720 N 0.929
SapurV1A.0028s0060 Salix purpurea SapurV1A.0028s0060 N 0.929
AMTR_s00003p00266720 Amborella trichopoda AMTR_s00003p00266720 N 0.919
GLYMA01G32810 Glycine max GLYMA01G32810 N 0.919
GLYMA03G04330 Glycine max GLYMA03G04330 N 0.919
GSMUA_Achr4G23790_001 Musa acuminata GSMUA_Achr4G23790_001 N 0.919
GSMUA_Achr8G03800_001 Musa acuminata GSMUA_Achr8G03800_001 N 0.919
MTR_4g028130 Medicago truncatula MTR_4g028130 N 0.919
POPTR_0004s03530 Populus trichocarpa POPTR_0004s03530 N 0.919
PRUPE_ppa001220mg Prunus persica PRUPE_ppa001220mg N 0.919
VAL3 Vitis vinifera VIT_00s0181g00260 N 0.919
Ca_23185 Cicer arietinum Ca_23185 N 0.919
Pm009906 Prunus mume Pm009906 N 0.919
Ciclev10014219m.g Citrus clementina Ciclev10014219m.g N 0.919
SapurV1A.0044s0150 Salix purpurea SapurV1A.0044s0150 N 0.919
PK04158.1 Cannabis sativa PK04158.1 N 0.919
PK13763.1 Cannabis sativa PK13763.1 N 0.919
OS07G0563350 Oryza sativa OS07G0563350 N 0.918
MLOC_4657 Hordeum vulgare MLOC_4657 N 0.909
POPTR_0011s04340 Populus trichocarpa POPTR_0011s04340 N 0.909
PRUPE_ppa001234mg Prunus persica PRUPE_ppa001234mg N 0.909
TCM_019701 Theobroma cacao TCM_019701 N 0.909
Traes_2AS_C4FD8E351 Triticum aestivum Traes_2AS_C4FD8E351 N 0.909
Traes_2BS_A61094919 Triticum aestivum Traes_2BS_A61094919 N 0.909
Traes_2DS_3E4E3BEFC Triticum aestivum Traes_2DS_3E4E3BEFC N 0.909
Pm003031 Prunus mume Pm003031 N 0.909
gene13877-v1.0-hybrid Fragaria vesca gene13877-v1.0-hybrid N 0.909
Gorai.011G022400 Gossypium raimondii Gorai.011G022400 N 0.909
PDK_20s13009463g004 Phoenix dactylifera PDK_20s13009463g004 N 0.909
Eucgr.E03465 Eucalyptus grandis Eucgr.E03465 N 0.906
Solyc02g079020.2 Solanum lycopersicum Solyc02g079020.2 N 0.899
TCM_029976 Theobroma cacao TCM_029976 N 0.899
HSL1 Vitis vinifera VIT_08s0058g01300 N 0.899
evm.TU.supercontig_0.91 Carica papaya evm.TU.supercontig_0.91 N 0.899
Bo4g173060 Brassica oleracea Bo4g173060 N 0.889
Bo7g115560 Brassica oleracea Bo7g115560 N 0.889
Bo7g115570 Brassica oleracea Bo7g115570 N 0.889
Bra023968 Brassica rapa Bra023968 N 0.889
Solyc10g075030.1 Solanum lycopersicum Solyc10g075030.1 N 0.889
Cla018330 Citrullus lanatus Cla018330 N 0.889
29915.m000469 Ricinus communis 29915.m000469 N 0.889
cassava39646.m1 Manihot esculenta cassava39646.m1 N 0.889
cassava41301.m1 Manihot esculenta cassava41301.m1 N 0.889
Cucsa.177010 Cucumis sativus Cucsa.177010 N 0.889
Bostr.7867s1055 Boechera stricta Bostr.7867s1055 N 0.889
Ciclev10011039m.g Citrus clementina Ciclev10011039m.g N 0.889
Eucgr.F02704 Eucalyptus grandis Eucgr.F02704 N 0.889
Eucgr.L01473 Eucalyptus grandis Eucgr.L01473 N 0.889
Gorai.005G004300 Gossypium raimondii Gorai.005G004300 N 0.889
Gorai.009G173100 Gossypium raimondii Gorai.009G173100 N 0.889
Gorai.011G127500 Gossypium raimondii Gorai.011G127500 N 0.889
orange1.1g002708m.g Citrus sinensis orange1.1g002708m.g N 0.889
Thhalv10024481m.g Eutrema salsugineum Thhalv10024481m.g N 0.889
Bo4g058460 Brassica oleracea Bo4g058460 N 0.879
Bra018313 Brassica rapa Bra018313 N 0.879
BRADI1G17680 Brachypodium distachyon BRADI1G17680 N 0.879
GRMZM2G158162 Zea mays GRMZM2G158162 N 0.879
GRMZM2G172621 Zea mays GRMZM2G172621 N 0.879
MTR_2g011940 Medicago truncatula MTR_2g011940 N 0.879
POPTR_0006s10880 Populus trichocarpa POPTR_0006s10880 N 0.879
POPTR_0016s14350 Populus trichocarpa POPTR_0016s14350 N 0.879
Sb02g043000 Sorghum bicolor Sb02g043000 N 0.879
TCM_042290 Theobroma cacao TCM_042290 N 0.879
cassava25238.valid.m1 Manihot esculenta cassava25238.valid.m1 N 0.879
mgf007363m Mimulus guttatus mgf007363m N 0.879
Gorai.003G152700 Gossypium raimondii Gorai.003G152700 N 0.879
Lus10022741.g Linum usitatissimum Lus10022741.g N 0.879
Lus10025226.g Linum usitatissimum Lus10025226.g N 0.879
SapurV1A.0065s0470 Salix purpurea SapurV1A.0065s0470 N 0.879
SapurV1A.0914s0080 Salix purpurea SapurV1A.0914s0080 N 0.879
BGIOSGA023709 Oryza indica BGIOSGA023709 N 0.869
Bra021635 Brassica rapa Bra021635 N 0.869
F775_32613 Aegilops tauschii F775_32613 N 0.869
GLYMA13G31970 Glycine max GLYMA13G31970 N 0.869
GLYMA15G07350 Glycine max GLYMA15G07350 N 0.869
GSMUA_Achr5G27930_001 Musa acuminata GSMUA_Achr5G27930_001 N 0.869
GSMUA_Achr8G01750_001 Musa acuminata GSMUA_Achr8G01750_001 N 0.869
LPERR07G23240 Leersia perrieri LPERR07G23240 N 0.869
OB07G31850 Oryza brachyantha OB07G31850 N 0.869
OBART07G26400 Oryza barthii OBART07G26400 N 0.869
OGLUM07G26430 Oryza glumaepatula OGLUM07G26430 N 0.869
OLONG_008212 Oryza longistaminata OLONG_008212 N 0.869
OMERI07G23020 Oryza meridionalis OMERI07G23020 N 0.869
ONIVA07G26110 Oryza nivara ONIVA07G26110 N 0.869
ORGLA07G0207500 Oryza glaberrima ORGLA07G0207500 N 0.869
ORUFI07G27410 Oryza rufipogon ORUFI07G27410 N 0.869
OS07G0679700 Oryza sativa OS07G0679700 N 0.869
Si028834m.g Setaria italica Si028834m.g N 0.869
Traes_2AS_F4CEC9849 Triticum aestivum Traes_2AS_F4CEC9849 N 0.869
Traes_2BS_5B00A8C50 Triticum aestivum Traes_2BS_5B00A8C50 N 0.869
Traes_2DS_B1C947D2B Triticum aestivum Traes_2DS_B1C947D2B N 0.869
TRIUR3_04238 Triticum urartu TRIUR3_04238 N 0.869
29917.m001969 Ricinus communis 29917.m001969 N 0.869
Ciclev10000225m.g Citrus clementina Ciclev10000225m.g N 0.869
Pavir.Ba00225 Panicum virgatum Pavir.Ba00225 N 0.869
Pavir.Bb03754 Panicum virgatum Pavir.Bb03754 N 0.869
PDK_20s13009466g004 Phoenix dactylifera PDK_20s13009466g004 N 0.869
gene30690-v1.0-hybrid Fragaria vesca gene30690-v1.0-hybrid N 0.867
PK09020.1 Cannabis sativa PK09020.1 N 0.867
Bo3g024640 Brassica oleracea Bo3g024640 N 0.859
Bra022801 Brassica rapa Bra022801 N 0.859
PRUPE_ppa001229mg Prunus persica PRUPE_ppa001229mg N 0.859
Pm000247 Prunus mume Pm000247 N 0.859
cassava13133.valid.m1 Manihot esculenta cassava13133.valid.m1 N 0.859
evm.TU.supercontig_2.296 Carica papaya evm.TU.supercontig_2.296 N 0.859
Lus10018440.g Linum usitatissimum Lus10018440.g N 0.859
Lus10025142.g Linum usitatissimum Lus10025142.g N 0.859
SapurV1A.0215s0260 Salix purpurea SapurV1A.0215s0260 N 0.859
Bostr.24513s0191 Boechera stricta Bostr.24513s0191 N 0.857
Carubv10022654m.g Capsella rubella Carubv10022654m.g N 0.857
POPTR_0019s15070 Populus trichocarpa POPTR_0019s15070 N 0.848
HSI2 Arabidopsis lyrata scaffold_401535.1 N 0.848
Solyc06g082520.2 Solanum lycopersicum Solyc06g082520.2 N 0.848
Ca_08924 Cicer arietinum Ca_08924 N 0.848
Cla008225 Citrullus lanatus Cla008225 N 0.848
Aquca_008_00005 Aquilegia coerulea Aquca_008_00005 N 0.848
Cagra.0567s0011 Capsella grandiflora Cagra.0567s0011 N 0.848
Thhalv10016263m.g Eutrema salsugineum Thhalv10016263m.g N 0.848
Aquca_063_00016 Aquilegia coerulea Aquca_063_00016 N 0.847
VAL1 Arabidopsis thaliana AT2G30470 N 0.838
GLYMA11G31234 Glycine max GLYMA11G31234 N 0.838
GLYMA18G05840 Glycine max GLYMA18G05840 N 0.838
SELMODRAFT_451631 Selaginella moellendorffii SELMODRAFT_451631 N 0.838
gene28098-v1.0-hybrid Fragaria vesca gene28098-v1.0-hybrid N 0.838
MDP0000127640 Malus domestica MDP0000127640 N 0.838
MDP0000267885 Malus domestica MDP0000267885 N 0.838
POPTR_0013s15330 Populus trichocarpa POPTR_0013s15330 N 0.828
SELMODRAFT_451626 Selaginella moellendorffii SELMODRAFT_451626 N 0.828
VIT_06s0004g08100 Vitis vinifera VIT_06s0004g08100 N 0.828
29976.m000497 Ricinus communis 29976.m000497 N 0.828
MDP0000229344 Malus domestica MDP0000229344 N 0.828
PDK_20s1314471g001 Phoenix dactylifera PDK_20s1314471g001 N 0.826
VAL2 Arabidopsis thaliana AT4G32010 N 0.825
HSL1 Arabidopsis lyrata scaffold_700997.1 N 0.825
Cagra.12385s0007 Capsella grandiflora Cagra.12385s0007 N 0.825
Carubv10004194m.g Capsella rubella Carubv10004194m.g N 0.825
LjSGA_029833.1 Lotus japonicus LjSGA_029833.1 N 0.822
PDK_20s1455001g004 Phoenix dactylifera PDK_20s1455001g004 N 0.819
MTR_3g467380 Medicago truncatula MTR_3g467380 N 0.818
mgf007846m Mimulus guttatus mgf007846m N 0.818
Thhalv10024526m.g Eutrema salsugineum Thhalv10024526m.g N 0.818
Bo1g024250 Brassica oleracea Bo1g024250 N 0.808
Bra013535 Brassica rapa Bra013535 N 0.808
Bostr.10689s0100 Boechera stricta Bostr.10689s0100 N 0.808
Eucgr.B04027 Eucalyptus grandis Eucgr.B04027 N 0.808
SapurV1A.1353s0040 Salix purpurea SapurV1A.1353s0040 N 0.808
mgf024907m Mimulus guttatus mgf024907m N 0.806
MLOC_36861 Hordeum vulgare MLOC_36861 N 0.802
mgf013365m Mimulus guttatus mgf013365m N 0.798
GLYMA14G38492 Glycine max GLYMA14G38492 N 0.788
GLYMA02G40280 Glycine max GLYMA02G40280 N 0.778
Carubv10004192m.g Capsella rubella Carubv10004192m.g N 0.778
Aquca_045_00208 Aquilegia coerulea Aquca_045_00208 N 0.776
Cucsa.111990 Cucumis sativus Cucsa.111990 N 0.772
F775_30051 Aegilops tauschii F775_30051 N 0.771
Ca_00244 Cicer arietinum Ca_00244 N 0.771
OPUNC07G24850 Oryza punctata OPUNC07G24850 N 0.768
Cagra.3519s0007 Capsella grandiflora Cagra.3519s0007 N 0.768
LjSGA_009543.1 Lotus japonicus LjSGA_009543.1 N 0.768
Ca_15659 Cicer arietinum Ca_15659 N 0.765
Eucgr.E03467 Eucalyptus grandis Eucgr.E03467 N 0.758
MDP0000274788 Malus domestica MDP0000274788 N 0.758
PDK_20s1397381g002 Phoenix dactylifera PDK_20s1397381g002 N 0.758
MTR_5g075410 Medicago truncatula MTR_5g075410 N 0.753
SELMODRAFT_451634 Selaginella moellendorffii SELMODRAFT_451634 N 0.727
SELMODRAFT_451635 Selaginella moellendorffii SELMODRAFT_451635 N 0.727
orange1.1g039386m.g Citrus sinensis orange1.1g039386m.g N 0.710