ENSLACG00000011306 (Latimeria chalumnae)
BED ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02892 (zf-BED) IPR003656 ENSLACG00000011306 T026040_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZBED1
M02771_2.00 		Homo sapiens
HTRTCGCGACATR
YATGTCGCGAYAD		 SELEX
Jolma et al.(2013)
ZBED1_1 		0.955 0.955
ZBED1
M04056_2.00 		Homo sapiens
VTRTCGCGAYAT
ATRTCGCGAYAB		 SELEX
Yin et al.(2017)
ZBED1_eDBD_HT-SELEX 		0.955 0.955
ZBED1
M09776_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DREF_01 		0.955 0.955
ZBED1
M04057_2.00 		Homo sapiens
MTRTCGCGAYAK
MTRTCGCGAYAK		 SELEX
Yin et al.(2017)
ZBED1_eDBD_Methyl-HT-SELEX 		0.955 0.955
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSLACP00000012840 BED ZF 23 72

Links

Other BED ZF family TFs
Other Latimeria chalumnae TFs

35 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ZBED1 Anolis carolinensis ENSACAG00000023513 I 0.955
ENSAMEG00000018666 Ailuropoda melanoleuca ENSAMEG00000018666 I 0.955
ENSAPLG00000011428 Anas platyrhynchos ENSAPLG00000011428 I 0.955
ENSCSAG00000019527 Chlorocebus sabaeus ENSCSAG00000019527 I 0.955
ZBED1 Dasypus novemcinctus ENSDNOG00000012869 I 0.955
ENSFALG00000015033 Ficedula albicollis ENSFALG00000015033 I 0.955
ZBED1 Felis catus ENSFCAG00000012522 I 0.955
ZBED1 Homo sapiens ENSG00000214717 D 0.955
ENSGALG00000028601 Gallus gallus ENSGALG00000028601 I 0.955
ZBED1 Gorilla gorilla ENSGGOG00000011706 I 0.955
ZBED1 Loxodonta africana ENSLAFG00000013332 I 0.955
ENSLOCG00000017415 Lepisosteus oculatus ENSLOCG00000017415 I 0.955
ZBED1 Meleagris gallopavo ENSMGAG00000015483 I 0.955
ZBED1 Macaca mulatta ENSMMUG00000007514 I 0.955
ENSNLEG00000018727 Nomascus leucogenys ENSNLEG00000018727 I 0.955
ZBED1 Ornithorhynchus anatinus ENSOANG00000010515 I 0.955
ENSPANG00000011132 Papio anubis ENSPANG00000011132 I 0.955
ENSPPYG00000020088 Pongo abelii ENSPPYG00000020088 I 0.955
ENSPSIG00000002047 Pelodiscus sinensis ENSPSIG00000002047 I 0.955
ENSSHAG00000012608 Sarcophilus harrisii ENSSHAG00000012608 I 0.955
Aan_R008132 Calypte anna Aan_R008132 I 0.955
Afo_R005396 Aptenodytes forsteri Afo_R005396 I 0.955
Brh_R008630 Buceros rhinoceros Brh_R008630 I 0.955
Cmyd_10021612 Chelonia mydas Cmyd_10021612 I 0.955
ENSP00000370620 Macaca fascicularis ENSP00000370620 I 0.955
Gfo_R009655 Geospiza fortis Gfo_R009655 I 0.955
Pvit_08935 Pogona vitticeps Pvit_08935 I 0.955
Tal_R000939 Tyto alba Tal_R000939 I 0.955
XP_002933665 Xenopus tropicalis XP_002933665 I 0.955
XP_002941050 Xenopus tropicalis XP_002941050 I 0.955
ZBED1 Bos taurus ENSBTAG00000024641 I 0.932
ENSOARG00000008137 Ovis aries ENSOARG00000008137 I 0.932
ZBED1 Oryctolagus cuniculus ENSOCUG00000023740 I 0.932
ENSP00000370620-D1 Bos grunniens ENSP00000370620-D1 I 0.932
ENSONIG00000007347 Oreochromis niloticus ENSONIG00000007347 I 0.909