Pavir.Fb00509 (Panicum virgatum)
BED ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02892 (zf-BED) IPR003656 Pavir.Fb00509 T028492_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Fb00509.1.p BED ZF 30 80
Pavir.Fb00509.1.p BED ZF 130 174
Pavir.Fb00509.2.p BED ZF 30 80
Pavir.Fb00509.2.p BED ZF 130 174
Pavir.Fb00509.3.p BED ZF 30 80
Pavir.Fb00509.3.p BED ZF 130 174

Links

Other BED ZF family TFs
Other Panicum virgatum TFs

12 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pavir.J16563 Panicum virgatum Pavir.J16563 N 0.977
Si013272m.g Setaria italica Si013272m.g N 0.953
Sb07g005045 Sorghum bicolor Sb07g005045 N 0.942
BGIOSGA028099 Oryza indica BGIOSGA028099 N 0.826
ONIVA08G04740 Oryza nivara ONIVA08G04740 N 0.826
OPUNC08G04700 Oryza punctata OPUNC08G04700 N 0.826
ORUFI08G05400 Oryza rufipogon ORUFI08G05400 N 0.826
OS08G0180500 Oryza sativa OS08G0180500 N 0.826
OB08G14980 Oryza brachyantha OB08G14980 N 0.802
BRADI5G22670 Brachypodium distachyon BRADI5G22670 N 0.709
Pavir.Gb00429 Panicum virgatum Pavir.Gb00429 N 0.709