Pavir.Gb00429 (Panicum virgatum)
BED ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02892 (zf-BED) IPR003656 Pavir.Gb00429 T028502_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Gb00429.1.p BED ZF 49 95
Pavir.Gb00429.1.p BED ZF 148 194
Pavir.Gb00429.2.p BED ZF 49 95
Pavir.Gb00429.2.p BED ZF 148 194
Pavir.Gb00429.3.p BED ZF 49 95
Pavir.Gb00429.3.p BED ZF 148 194

Links

Other BED ZF family TFs
Other Panicum virgatum TFs

23 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Si009364m.g Setaria italica Si009364m.g N 0.988
Pavir.Ga00401 Panicum virgatum Pavir.Ga00401 N 0.988
BRADI5G22670 Brachypodium distachyon BRADI5G22670 N 0.919
Sb06g029390 Sorghum bicolor Sb06g029390 N 0.919
OB04G33050 Oryza brachyantha OB04G33050 N 0.907
LPERR04G21800 Leersia perrieri LPERR04G21800 N 0.895
MLOC_21064 Hordeum vulgare MLOC_21064 N 0.895
Traes_2AL_33E725A3F Triticum aestivum Traes_2AL_33E725A3F N 0.895
TRIUR3_02642 Triticum urartu TRIUR3_02642 N 0.895
Traes_2BL_F5E17E76E Triticum aestivum Traes_2BL_F5E17E76E N 0.885
BGIOSGA014299 Oryza indica BGIOSGA014299 N 0.884
ORGLA04G0232300 Oryza glaberrima ORGLA04G0232300 N 0.884
OS04G0628400 Oryza sativa OS04G0628400 N 0.884
Sb07g005045 Sorghum bicolor Sb07g005045 N 0.733
BGIOSGA028099 Oryza indica BGIOSGA028099 N 0.721
ONIVA08G04740 Oryza nivara ONIVA08G04740 N 0.721
OPUNC08G04700 Oryza punctata OPUNC08G04700 N 0.721
ORUFI08G05400 Oryza rufipogon ORUFI08G05400 N 0.721
OS08G0180500 Oryza sativa OS08G0180500 N 0.721
Si013272m.g Setaria italica Si013272m.g N 0.721
Pavir.Fb00509 Panicum virgatum Pavir.Fb00509 N 0.709
Pavir.J16563 Panicum virgatum Pavir.J16563 N 0.709