CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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BGIOSGA035917
(
Oryza indica
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00010 (HLH)
IPR001092
BGIOSGA035917
T030988_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
BGIOSGA035917-PA
bHLH
229
272
LYARKRRERINERLKTLQNLVPNGTKVDISTMLEEAVHYVKFLQ
Links
Other
bHLH
family TFs
Other
Oryza indica
TFs
213 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AMTR_s00164p00062120
Amborella trichopoda
AMTR_s00164p00062120
N
0.914
AT2G14760
Arabidopsis thaliana
AT2G14760
N
0.914
BHLH85
Arabidopsis thaliana
AT4G33880
N
0.914
BGIOSGA023988
Oryza indica
BGIOSGA023988
N
0.914
Bo1g007780
Brassica oleracea
Bo1g007780
N
0.914
Bo3g169400
Brassica oleracea
Bo3g169400
N
0.914
Bo7g116460
Brassica oleracea
Bo7g116460
N
0.914
Bra011476
Brassica rapa
Bra011476
N
0.914
Bra034587
Brassica rapa
Bra034587
N
0.914
Bra036969
Brassica rapa
Bra036969
N
0.914
BRADI1G14600
Brachypodium distachyon
BRADI1G14600
N
0.914
BRADI4G03070
Brachypodium distachyon
BRADI4G03070
N
0.914
F775_02582
Aegilops tauschii
F775_02582
N
0.914
RSL2
Arabidopsis lyrata
fgenesh2_kg.7__724__AT4G33880.1
N
0.914
GLYMA10G40350
Glycine max
GLYMA10G40350
N
0.914
GLYMA10G40360
Glycine max
GLYMA10G40360
N
0.914
GLYMA14G09781
Glycine max
GLYMA14G09781
N
0.914
GLYMA17G35423
Glycine max
GLYMA17G35423
N
0.914
GLYMA20G26980
Glycine max
GLYMA20G26980
N
0.914
GLYMA20G26991
Glycine max
GLYMA20G26991
N
0.914
GRMZM2G395549
Zea mays
GRMZM2G395549
N
0.914
GSMUA_Achr3G18870_001
Musa acuminata
GSMUA_Achr3G18870_001
N
0.914
GSMUA_Achr4G23240_001
Musa acuminata
GSMUA_Achr4G23240_001
N
0.914
GSMUA_Achr6G07760_001
Musa acuminata
GSMUA_Achr6G07760_001
N
0.914
LPERR07G17840
Leersia perrieri
LPERR07G17840
N
0.914
LPERR12G14550
Leersia perrieri
LPERR12G14550
N
0.914
MLOC_60270
Hordeum vulgare
MLOC_60270
N
0.914
MLOC_76486
Hordeum vulgare
MLOC_76486
N
0.914
MTR_1g018090
Medicago truncatula
MTR_1g018090
N
0.914
MTR_1g106460
Medicago truncatula
MTR_1g106460
N
0.914
MTR_1g106480
Medicago truncatula
MTR_1g106480
N
0.914
MTR_5g005110
Medicago truncatula
MTR_5g005110
N
0.914
OB07G26210
Oryza brachyantha
OB07G26210
N
0.914
OB12G24200
Oryza brachyantha
OB12G24200
N
0.914
OBART12G17400
Oryza barthii
OBART12G17400
N
0.914
OGLUM07G20330
Oryza glumaepatula
OGLUM07G20330
N
0.914
OGLUM09G03740
Oryza glumaepatula
OGLUM09G03740
N
0.914
OLONG_006157
Oryza longistaminata
OLONG_006157
N
0.914
OLONG_014997
Oryza longistaminata
OLONG_014997
N
0.914
OMERI07G17220
Oryza meridionalis
OMERI07G17220
N
0.914
OMERI12G12030
Oryza meridionalis
OMERI12G12030
N
0.914
ONIVA07G18960
Oryza nivara
ONIVA07G18960
N
0.914
ONIVA12G15960
Oryza nivara
ONIVA12G15960
N
0.914
OPUNC07G19390
Oryza punctata
OPUNC07G19390
N
0.914
OPUNC12G15720
Oryza punctata
OPUNC12G15720
N
0.914
ORGLA12G0149000
Oryza glaberrima
ORGLA12G0149000
N
0.914
ORUFI07G21430
Oryza rufipogon
ORUFI07G21430
N
0.914
ORUFI12G19280
Oryza rufipogon
ORUFI12G19280
N
0.914
OS07G0588400
Oryza sativa
OS07G0588400
N
0.914
OS12G0589000
Oryza sativa
OS12G0589000
N
0.914
PGSC0003DMG400021526
Solanum tuberosum
PGSC0003DMG400021526
N
0.914
PGSC0003DMG400036714
Solanum tuberosum
PGSC0003DMG400036714
N
0.914
POPTR_0001s30150
Populus trichocarpa
POPTR_0001s30150
N
0.914
POPTR_0002s12000
Populus trichocarpa
POPTR_0002s12000
N
0.914
POPTR_0009s09210
Populus trichocarpa
POPTR_0009s09210
N
0.914
POPTR_0014s01730
Populus trichocarpa
POPTR_0014s01730
N
0.914
PRUPE_ppa015160mg
Prunus persica
PRUPE_ppa015160mg
N
0.914
Sb01g007160
Sorghum bicolor
Sb01g007160
N
0.914
Si039720m.g
Setaria italica
Si039720m.g
N
0.914
Solyc01g107140.1
Solanum lycopersicum
Solyc01g107140.1
N
0.914
Solyc04g077960.1
Solanum lycopersicum
Solyc04g077960.1
N
0.914
TCM_007220
Theobroma cacao
TCM_007220
N
0.914
TCM_034717
Theobroma cacao
TCM_034717
N
0.914
Traes_5AS_5B9D5E067
Triticum aestivum
Traes_5AS_5B9D5E067
N
0.914
Traes_5DS_51467BEB4
Triticum aestivum
Traes_5DS_51467BEB4
N
0.914
TRIUR3_24341
Triticum urartu
TRIUR3_24341
N
0.914
VIT_03s0091g00730
Vitis vinifera
VIT_03s0091g00730
N
0.914
VIT_18s0001g09210
Vitis vinifera
VIT_18s0001g09210
N
0.914
Ca_01588
Cicer arietinum
Ca_01588
N
0.914
Ca_05644
Cicer arietinum
Ca_05644
N
0.914
Ca_11909
Cicer arietinum
Ca_11909
N
0.914
Ca_18366
Cicer arietinum
Ca_18366
N
0.914
Cla016346
Citrullus lanatus
Cla016346
N
0.914
Cla020918
Citrullus lanatus
Cla020918
N
0.914
Cla022968
Citrullus lanatus
Cla022968
N
0.914
Pm005392
Prunus mume
Pm005392
N
0.914
28152.m000914
Ricinus communis
28152.m000914
N
0.914
30170.m013749
Ricinus communis
30170.m013749
N
0.914
cassava14986.m1
Manihot esculenta
cassava14986.m1
N
0.914
cassava20440.m1
Manihot esculenta
cassava20440.m1
N
0.914
cassava25589.m1
Manihot esculenta
cassava25589.m1
N
0.914
cassava38950.m1
Manihot esculenta
cassava38950.m1
N
0.914
Cucsa.097490
Cucumis sativus
Cucsa.097490
N
0.914
Cucsa.219180
Cucumis sativus
Cucsa.219180
N
0.914
Cucsa.352750
Cucumis sativus
Cucsa.352750
N
0.914
mgf018282m
Mimulus guttatus
mgf018282m
N
0.914
mgf022238m
Mimulus guttatus
mgf022238m
N
0.914
mgf024863m
Mimulus guttatus
mgf024863m
N
0.914
Aquca_017_00066
Aquilegia coerulea
Aquca_017_00066
N
0.914
Aquca_042_00162
Aquilegia coerulea
Aquca_042_00162
N
0.914
Aquca_042_00163
Aquilegia coerulea
Aquca_042_00163
N
0.914
Bostr.2199s0029
Boechera stricta
Bostr.2199s0029
N
0.914
Bostr.7867s1234
Boechera stricta
Bostr.7867s1234
N
0.914
Cagra.1305s0010
Capsella grandiflora
Cagra.1305s0010
N
0.914
Cagra.9228s0001
Capsella grandiflora
Cagra.9228s0001
N
0.914
Carubv10006623m.g
Capsella rubella
Carubv10006623m.g
N
0.914
Carubv10015484m.g
Capsella rubella
Carubv10015484m.g
N
0.914
Ciclev10003450m.g
Citrus clementina
Ciclev10003450m.g
N
0.914
Ciclev10030309m.g
Citrus clementina
Ciclev10030309m.g
N
0.914
Eucgr.I01069
Eucalyptus grandis
Eucgr.I01069
N
0.914
evm.TU.supercontig_106.57
Carica papaya
evm.TU.supercontig_106.57
N
0.914
evm.TU.supercontig_142.14
Carica papaya
evm.TU.supercontig_142.14
N
0.914
gene02560-v1.0-hybrid
Fragaria vesca
gene02560-v1.0-hybrid
N
0.914
Gorai.005G231900
Gossypium raimondii
Gorai.005G231900
N
0.914
Gorai.009G219100
Gossypium raimondii
Gorai.009G219100
N
0.914
Gorai.010G025400
Gossypium raimondii
Gorai.010G025400
N
0.914
Lus10001068.g
Linum usitatissimum
Lus10001068.g
N
0.914
Lus10004315.g
Linum usitatissimum
Lus10004315.g
N
0.914
MDP0000145825
Malus domestica
MDP0000145825
N
0.914
MDP0000198037
Malus domestica
MDP0000198037
N
0.914
MDP0000573178
Malus domestica
MDP0000573178
N
0.914
orange1.1g036928m.g
Citrus sinensis
orange1.1g036928m.g
N
0.914
orange1.1g047654m.g
Citrus sinensis
orange1.1g047654m.g
N
0.914
Pavir.Ia00352
Panicum virgatum
Pavir.Ia00352
N
0.914
Pavir.Ia04640
Panicum virgatum
Pavir.Ia04640
N
0.914
Pavir.Ib00696
Panicum virgatum
Pavir.Ib00696
N
0.914
Pavir.J00626
Panicum virgatum
Pavir.J00626
N
0.914
SapurV1A.0005s0400
Salix purpurea
SapurV1A.0005s0400
N
0.914
SapurV1A.0019s0320
Salix purpurea
SapurV1A.0019s0320
N
0.914
SapurV1A.0476s0200
Salix purpurea
SapurV1A.0476s0200
N
0.914
Thhalv10026786m.g
Eutrema salsugineum
Thhalv10026786m.g
N
0.914
PK01802.1
Cannabis sativa
PK01802.1
N
0.914
chr1.CM0088.610.nd
Lotus japonicus
chr1.CM0088.610.nd
N
0.914
BGIOSGA011251
Oryza indica
BGIOSGA011251
N
0.912
LPERR11G16970
Leersia perrieri
LPERR11G16970
N
0.912
OB03G17860
Oryza brachyantha
OB03G17860
N
0.912
OBART03G07520
Oryza barthii
OBART03G07520
N
0.912
OGLUM03G07680
Oryza glumaepatula
OGLUM03G07680
N
0.912
OLONG_008046
Oryza longistaminata
OLONG_008046
N
0.912
OMERI03G07360
Oryza meridionalis
OMERI03G07360
N
0.912
ONIVA03G07980
Oryza nivara
ONIVA03G07980
N
0.912
OPUNC03G07300
Oryza punctata
OPUNC03G07300
N
0.912
ORGLA03G0073500
Oryza glaberrima
ORGLA03G0073500
N
0.912
ORUFI03G07580
Oryza rufipogon
ORUFI03G07580
N
0.912
OS03G0205300
Oryza sativa
OS03G0205300
N
0.912
PGSC0003DMG400039299
Solanum tuberosum
PGSC0003DMG400039299
N
0.912
Sb05g025230
Sorghum bicolor
Sb05g025230
N
0.912
Eucgr.F02259
Eucalyptus grandis
Eucgr.F02259
N
0.912
Eucgr.G01234
Eucalyptus grandis
Eucgr.G01234
N
0.912
GSMUA_Achr2G17130_001
Musa acuminata
GSMUA_Achr2G17130_001
N
0.911
BGIOSGA010239
Oryza indica
BGIOSGA010239
N
0.903
GRMZM2G057260
Zea mays
GRMZM2G057260
N
0.903
GRMZM2G383841
Zea mays
GRMZM2G383841
N
0.903
LPERR03G21650
Leersia perrieri
LPERR03G21650
N
0.903
OB03G34210
Oryza brachyantha
OB03G34210
N
0.903
OBART03G26170
Oryza barthii
OBART03G26170
N
0.903
OGLUM03G27050
Oryza glumaepatula
OGLUM03G27050
N
0.903
OLONG_010636
Oryza longistaminata
OLONG_010636
N
0.903
OMERI03G23570
Oryza meridionalis
OMERI03G23570
N
0.903
ONIVA03G27180
Oryza nivara
ONIVA03G27180
N
0.903
OPUNC03G23870
Oryza punctata
OPUNC03G23870
N
0.903
ORGLA03G0242600
Oryza glaberrima
ORGLA03G0242600
N
0.903
ORUFI03G27070
Oryza rufipogon
ORUFI03G27070
N
0.903
Sb02g037990
Sorghum bicolor
Sb02g037990
N
0.903
Si032445m.g
Setaria italica
Si032445m.g
N
0.903
Pavir.Ba01059
Panicum virgatum
Pavir.Ba01059
N
0.903
Pavir.Bb01173
Panicum virgatum
Pavir.Bb01173
N
0.903
fgenesh2_kg.3__3067__AT2G14760.1
Arabidopsis lyrata
fgenesh2_kg.3__3067__AT2G14760.1
N
0.902
GLYMA04G04801
Glycine max
GLYMA04G04801
N
0.894
GSMUA_Achr9G09600_001
Musa acuminata
GSMUA_Achr9G09600_001
N
0.894
Thhalv10003393m.g
Eutrema salsugineum
Thhalv10003393m.g
N
0.894
GSMUA_AchrUn_randomG07080_001
Musa acuminata
GSMUA_AchrUn_randomG07080_001
N
0.890
Traes_5BS_0F8DBB33D
Triticum aestivum
Traes_5BS_0F8DBB33D
N
0.890
GSMUA_Achr6G16890_001
Musa acuminata
GSMUA_Achr6G16890_001
N
0.888
BRADI1G22960
Brachypodium distachyon
BRADI1G22960
N
0.882
F775_02706
Aegilops tauschii
F775_02706
N
0.882
MLOC_74022
Hordeum vulgare
MLOC_74022
N
0.882
Traes_2AS_9A3F73BE3
Triticum aestivum
Traes_2AS_9A3F73BE3
N
0.882
Traes_2BS_659F9ABB9
Triticum aestivum
Traes_2BS_659F9ABB9
N
0.882
Traes_2DS_7C9C33E09
Triticum aestivum
Traes_2DS_7C9C33E09
N
0.882
TRIUR3_17670
Triticum urartu
TRIUR3_17670
N
0.882
BHLH54
Arabidopsis thaliana
AT1G27740
N
0.879
Bo3g142890
Brassica oleracea
Bo3g142890
N
0.879
Bo5g052310
Brassica oleracea
Bo5g052310
N
0.879
Bo7g048630
Brassica oleracea
Bo7g048630
N
0.879
Bra010921
Brassica rapa
Bra010921
N
0.879
Bra030063
Brassica rapa
Bra030063
N
0.879
Bra032846
Brassica rapa
Bra032846
N
0.879
F775_27628
Aegilops tauschii
F775_27628
N
0.879
RSL4
Arabidopsis lyrata
fgenesh2_kg.1__2933__AT1G27740.1
N
0.879
Traes_4AL_6A6EC9A6A
Triticum aestivum
Traes_4AL_6A6EC9A6A
N
0.879
Traes_4BS_9BFCC52AD
Triticum aestivum
Traes_4BS_9BFCC52AD
N
0.879
Traes_4DS_7488F4608
Triticum aestivum
Traes_4DS_7488F4608
N
0.879
Pm021172
Prunus mume
Pm021172
N
0.879
mgf019332m
Mimulus guttatus
mgf019332m
N
0.879
Bostr.15697s0100
Boechera stricta
Bostr.15697s0100
N
0.879
Cagra.1822s0081
Capsella grandiflora
Cagra.1822s0081
N
0.879
Carubv10011072m.g
Capsella rubella
Carubv10011072m.g
N
0.879
gene25555-v1.0-hybrid
Fragaria vesca
gene25555-v1.0-hybrid
N
0.879
Thhalv10009862m.g
Eutrema salsugineum
Thhalv10009862m.g
N
0.879
chr5.CM0096.500.nd
Lotus japonicus
chr5.CM0096.500.nd
N
0.879
chr5.CM0200.480.nc
Lotus japonicus
chr5.CM0200.480.nc
N
0.879
MDP0000946515
Malus domestica
MDP0000946515
N
0.878
Al_scaffold_0797_1
Arabidopsis lyrata
Al_scaffold_0797_1
N
0.873
BHLH139
Arabidopsis thaliana
AT5G43175
N
0.873
fgenesh2_kg.8__503__AT5G43175.1
Arabidopsis lyrata
fgenesh2_kg.8__503__AT5G43175.1
N
0.873
Bostr.3148s0158
Boechera stricta
Bostr.3148s0158
N
0.873
Cagra.1103s0007
Capsella grandiflora
Cagra.1103s0007
N
0.873
Carubv10028625m.g
Capsella rubella
Carubv10028625m.g
N
0.873
SapurV1A.0845s0110
Salix purpurea
SapurV1A.0845s0110
N
0.869
SapurV1A.2301s0020
Salix purpurea
SapurV1A.2301s0020
N
0.869
MDP0000131874
Malus domestica
MDP0000131874
N
0.856
LPERR12G11190
Leersia perrieri
LPERR12G11190
N
0.852
ONIVA12G13790
Oryza nivara
ONIVA12G13790
N
0.852
BRADI1G70860
Brachypodium distachyon
BRADI1G70860
N
0.847
MTR_3g103030
Medicago truncatula
MTR_3g103030
N
0.846
MLOC_67369
Hordeum vulgare
MLOC_67369
N
0.845
SELMODRAFT_404767
Selaginella moellendorffii
SELMODRAFT_404767
N
0.845
SELMODRAFT_419388
Selaginella moellendorffii
SELMODRAFT_419388
N
0.845
Traes_4AS_7530AAEB4
Triticum aestivum
Traes_4AS_7530AAEB4
N
0.845
Traes_4DL_61AE80723
Triticum aestivum
Traes_4DL_61AE80723
N
0.845
TRIUR3_01454
Triticum urartu
TRIUR3_01454
N
0.845
Traes_5BL_E1D1D198E
Triticum aestivum
Traes_5BL_E1D1D198E
N
0.838