Bo4g126940 (Brassica oleracea)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 Bo4g126940 T031169_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BHLH104
M01706_2.00 		Arabidopsis thaliana
GGCACGTGCC
GGCACGTGCC		 PBM
Weirauch et al.(2014)
pTH7365 		0.891 0.940
BHLH104
M06737_2.00 		Arabidopsis thaliana
GVCACGTGBMDDBHNSDNBH
DVNHSNDVHHKVCACGTGBC		 Dap-seq
OMalley et al.(2016)
bHLH104_col_b 		0.891 0.940
BHLH34
M01704_2.00 		Arabidopsis thaliana
VCACGYGH
DCRCGTGB		 PBM
Weirauch et al.(2014)
pTH7212 		0.856 0.940
BHLH34
M06734_2.00 		Arabidopsis thaliana
NNNHNNDNNNNVCACGTGHCN
NGDCACGTGBNNNNHNNDNNN		 Dap-seq
OMalley et al.(2016)
bHLH34_colamp_a 		0.856 0.940
BHLH34
M06735_2.00 		Arabidopsis thaliana
RWRNNNNNCACGTGBNNNNNNNN
NNNNNNNNVCACGTGNNNNNYWY		 Dap-seq
OMalley et al.(2016)
bHLH34_col 		0.856 0.940
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo4g126940.1 bHLH 135 184

Links

Other bHLH family TFs
Other Brassica oleracea TFs

31 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra041033 Brassica rapa Bra041033 I 0.894
BHLH104 Arabidopsis thaliana AT4G14410 D 0.891
bHLH104 Arabidopsis lyrata fgenesh2_kg.7__2895__AT4G14410.2 I 0.891
Bostr.0597s0053 Boechera stricta Bostr.0597s0053 I 0.891
Cagra.1718s0002 Capsella grandiflora Cagra.1718s0002 I 0.891
Carubv10005335m.g Capsella rubella Carubv10005335m.g I 0.891
Thhalv10025927m.g Eutrema salsugineum Thhalv10025927m.g I 0.891
Bo1g102270 Brassica oleracea Bo1g102270 I 0.879
Bo7g040830 Brassica oleracea Bo7g040830 I 0.879
Bra014923 Brassica rapa Bra014923 I 0.879
gene11436-v1.0-hybrid Fragaria vesca gene11436-v1.0-hybrid I 0.879
evm.TU.supercontig_44.78 Carica papaya evm.TU.supercontig_44.78 I 0.876
Cla021854 Citrullus lanatus Cla021854 I 0.875
Cucsa.255290 Cucumis sativus Cucsa.255290 I 0.875
Lus10022186.g Linum usitatissimum Lus10022186.g I 0.874
PRUPE_ppa011217mg Prunus persica PRUPE_ppa011217mg I 0.863
Ciclev10005872m.g Citrus clementina Ciclev10005872m.g I 0.863
orange1.1g028060m.g Citrus sinensis orange1.1g028060m.g I 0.863
BHLH34 Arabidopsis thaliana AT3G23210 D 0.856
bHLH34 Arabidopsis lyrata fgenesh2_kg.3__2536__AT3G23210.1 I 0.856
MTR_1g043430 Medicago truncatula MTR_1g043430 I 0.854
Ca_23174 Cicer arietinum Ca_23174 I 0.854
POPTR_0010s08360 Populus trichocarpa POPTR_0010s08360 N 0.852
SapurV1A.0007s0940 Salix purpurea SapurV1A.0007s0940 N 0.852
SapurV1A.0292s0060 Salix purpurea SapurV1A.0292s0060 N 0.852
cassava35418.valid.m1 Manihot esculenta cassava35418.valid.m1 N 0.850
Bostr.19424s0322 Boechera stricta Bostr.19424s0322 I 0.840
Eucgr.H00174 Eucalyptus grandis Eucgr.H00174 N 0.839
Lus10021199.g Linum usitatissimum Lus10021199.g N 0.839
Lus10021876.g Linum usitatissimum Lus10021876.g N 0.839
Lus10041148.g Linum usitatissimum Lus10041148.g N 0.839