Bra000872 (Brassica rapa)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 Bra000872 T031339_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Bra000872.1-P bHLH 153 200

Links

Other bHLH family TFs
Other Brassica rapa TFs

121 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AT1G03040 Arabidopsis thaliana AT1G03040 N 0.914
UNE12 Arabidopsis thaliana AT4G02590 N 0.914
Bo01031s030 Brassica oleracea Bo01031s030 N 0.914
Bo2g100750 Brassica oleracea Bo2g100750 N 0.914
Bo5g003580 Brassica oleracea Bo5g003580 N 0.914
Bo9g005930 Brassica oleracea Bo9g005930 N 0.914
Bra018539 Brassica rapa Bra018539 N 0.914
Bra033368 Brassica rapa Bra033368 N 0.914
Bra036256 Brassica rapa Bra036256 N 0.914
fgenesh2_kg.1__235__AT1G03040.1 Arabidopsis lyrata fgenesh2_kg.1__235__AT1G03040.1 N 0.914
UNE12 Arabidopsis lyrata fgenesh2_kg.6__3435__AT4G02590.2 N 0.914
Bostr.2983s0202 Boechera stricta Bostr.2983s0202 N 0.914
Cagra.0635s0023 Capsella grandiflora Cagra.0635s0023 N 0.914
Cagra.0897s0074 Capsella grandiflora Cagra.0897s0074 N 0.914
Carubv10001523m.g Capsella rubella Carubv10001523m.g N 0.914
Carubv10009831m.g Capsella rubella Carubv10009831m.g N 0.914
Thhalv10008279m.g Eutrema salsugineum Thhalv10008279m.g N 0.914
Thhalv10028824m.g Eutrema salsugineum Thhalv10028824m.g N 0.914
29598.m000464 Ricinus communis 29598.m000464 N 0.902
cassava18573.valid.m1 Manihot esculenta cassava18573.valid.m1 N 0.902
Lus10006587.g Linum usitatissimum Lus10006587.g N 0.902
Lus10015909.g Linum usitatissimum Lus10015909.g N 0.902
cassava22704.valid.m1 Manihot esculenta cassava22704.valid.m1 N 0.890
GLYMA02G16110 Glycine max GLYMA02G16110 N 0.884
GLYMA03G31510 Glycine max GLYMA03G31510 N 0.884
GLYMA10G03690 Glycine max GLYMA10G03690 N 0.884
GLYMA19G34360 Glycine max GLYMA19G34360 N 0.884
MTR_1g070870 Medicago truncatula MTR_1g070870 N 0.884
POPTR_0002s04620 Populus trichocarpa POPTR_0002s04620 N 0.884
TCM_004217 Theobroma cacao TCM_004217 N 0.884
VIT_07s0141g00220 Vitis vinifera VIT_07s0141g00220 N 0.884
Ca_07790 Cicer arietinum Ca_07790 N 0.884
Ca_12194 Cicer arietinum Ca_12194 N 0.884
Cla015040 Citrullus lanatus Cla015040 N 0.884
29883.m001988 Ricinus communis 29883.m001988 N 0.884
cassava36725.valid.m1 Manihot esculenta cassava36725.valid.m1 N 0.884
Cucsa.388780 Cucumis sativus Cucsa.388780 N 0.884
Ciclev10021443m.g Citrus clementina Ciclev10021443m.g N 0.884
Eucgr.B01487 Eucalyptus grandis Eucgr.B01487 N 0.884
Gorai.001G242500 Gossypium raimondii Gorai.001G242500 N 0.884
Gorai.007G141800 Gossypium raimondii Gorai.007G141800 N 0.884
orange1.1g022649m.g Citrus sinensis orange1.1g022649m.g N 0.884
SapurV1A.0006s1290 Salix purpurea SapurV1A.0006s1290 N 0.884
PK25419.1 Cannabis sativa PK25419.1 N 0.884
chr1.CM0375.380.nc Lotus japonicus chr1.CM0375.380.nc N 0.884
POPTR_0005s05500 Populus trichocarpa POPTR_0005s05500 N 0.878
SapurV1A.0729s0150 Salix purpurea SapurV1A.0729s0150 N 0.878
GSMUA_Achr4G21070_001 Musa acuminata GSMUA_Achr4G21070_001 I 0.873
GSMUA_Achr5G03100_001 Musa acuminata GSMUA_Achr5G03100_001 I 0.873
PGSC0003DMG400006089 Solanum tuberosum PGSC0003DMG400006089 N 0.873
PGSC0003DMG400013393 Solanum tuberosum PGSC0003DMG400013393 N 0.873
PRUPE_ppa009299mg Prunus persica PRUPE_ppa009299mg N 0.873
Solyc09g083220.2 Solanum lycopersicum Solyc09g083220.2 N 0.873
Pm020229 Prunus mume Pm020229 N 0.873
gene08188-v1.0-hybrid Fragaria vesca gene08188-v1.0-hybrid N 0.873
MDP0000176749 Malus domestica MDP0000176749 N 0.873
GLYMA10G30430 Glycine max GLYMA10G30430 N 0.872
GLYMA20G36770 Glycine max GLYMA20G36770 N 0.872
MTR_1g080890 Medicago truncatula MTR_1g080890 N 0.872
PRUPE_ppa008172mg Prunus persica PRUPE_ppa008172mg N 0.872
TCM_026346 Theobroma cacao TCM_026346 N 0.872
VIT_05s0020g04620 Vitis vinifera VIT_05s0020g04620 N 0.872
VIT_14s0030g02230 Vitis vinifera VIT_14s0030g02230 N 0.872
Ca_03755 Cicer arietinum Ca_03755 N 0.872
Cla011475 Citrullus lanatus Cla011475 N 0.872
Pm003525 Prunus mume Pm003525 N 0.872
Cucsa.289090 Cucumis sativus Cucsa.289090 N 0.872
Aquca_017_00590 Aquilegia coerulea Aquca_017_00590 N 0.872
Eucgr.H04337 Eucalyptus grandis Eucgr.H04337 N 0.872
evm.TU.supercontig_117.94 Carica papaya evm.TU.supercontig_117.94 N 0.872
gene16564-v1.0-hybrid Fragaria vesca gene16564-v1.0-hybrid N 0.872
Gorai.007G277200 Gossypium raimondii Gorai.007G277200 N 0.872
MDP0000295593 Malus domestica MDP0000295593 N 0.872
PK20184.1 Cannabis sativa PK20184.1 N 0.872
Solyc03g005350.2 Solanum lycopersicum Solyc03g005350.2 N 0.870
BGIOSGA013729 Oryza indica BGIOSGA013729 I 0.861
BGIOSGA025266 Oryza indica BGIOSGA025266 I 0.861
BRADI1G05430 Brachypodium distachyon BRADI1G05430 I 0.861
BRADI1G55427 Brachypodium distachyon BRADI1G55427 I 0.861
GRMZM2G004356 Zea mays GRMZM2G004356 I 0.861
GRMZM2G162382 Zea mays GRMZM2G162382 I 0.861
GSMUA_Achr9G25560_001 Musa acuminata GSMUA_Achr9G25560_001 I 0.861
LPERR03G31640 Leersia perrieri LPERR03G31640 I 0.861
LPERR07G04600 Leersia perrieri LPERR07G04600 I 0.861
OB07G13990 Oryza brachyantha OB07G13990 I 0.861
OBART03G37400 Oryza barthii OBART03G37400 I 0.861
OBART07G05280 Oryza barthii OBART07G05280 I 0.861
OGLUM03G37150 Oryza glumaepatula OGLUM03G37150 I 0.861
OGLUM07G04790 Oryza glumaepatula OGLUM07G04790 I 0.861
OLONG_014165 Oryza longistaminata OLONG_014165 I 0.861
OMERI03G34570 Oryza meridionalis OMERI03G34570 I 0.861
OMERI05G15760 Oryza meridionalis OMERI05G15760 I 0.861
ONIVA03G38760 Oryza nivara ONIVA03G38760 I 0.861
ONIVA07G04020 Oryza nivara ONIVA07G04020 I 0.861
OPUNC03G34510 Oryza punctata OPUNC03G34510 I 0.861
OPUNC07G05040 Oryza punctata OPUNC07G05040 I 0.861
ORGLA06G0244900 Oryza glaberrima ORGLA06G0244900 I 0.861
ORGLA07G0044500 Oryza glaberrima ORGLA07G0044500 I 0.861
ORUFI07G05060 Oryza rufipogon ORUFI07G05060 I 0.861
OS03G0797600 Oryza sativa OS03G0797600 I 0.861
Sb02g004570 Sorghum bicolor Sb02g004570 I 0.861
Si030704m.g Setaria italica Si030704m.g I 0.861
Si036929m.g Setaria italica Si036929m.g I 0.861
Pavir.Ba03672 Panicum virgatum Pavir.Ba03672 I 0.861
Pavir.J00283 Panicum virgatum Pavir.J00283 I 0.861
Pavir.J03221 Panicum virgatum Pavir.J03221 I 0.861
Pavir.J04249 Panicum virgatum Pavir.J04249 I 0.861
chr5.LjT29J15.30.nc Lotus japonicus chr5.LjT29J15.30.nc N 0.859
PGSC0003DMG400019334 Solanum tuberosum PGSC0003DMG400019334 N 0.858
POPTR_0005s23930 Populus trichocarpa POPTR_0005s23930 N 0.858
Solyc09g065820.2 Solanum lycopersicum Solyc09g065820.2 N 0.858
Gorai.004G075200 Gossypium raimondii Gorai.004G075200 N 0.858
Gorai.004G218900 Gossypium raimondii Gorai.004G218900 N 0.858
SapurV1A.0860s0050 Salix purpurea SapurV1A.0860s0050 N 0.858
SapurV1A.0110s0180 Salix purpurea SapurV1A.0110s0180 N 0.854
Ciclev10001768m.g Citrus clementina Ciclev10001768m.g N 0.852
evm.TU.supercontig_52.97 Carica papaya evm.TU.supercontig_52.97 N 0.849
Lus10002720.g Linum usitatissimum Lus10002720.g N 0.849
Lus10014726.g Linum usitatissimum Lus10014726.g N 0.849
Lus10018761.g Linum usitatissimum Lus10018761.g N 0.849
mgf001465m Mimulus guttatus mgf001465m N 0.846