CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra025158
(
Brassica rapa
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00010 (HLH)
IPR001092
Bra025158
T031495_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK07858.1
M01123_2.00
Cannabis sativa
HCACGTGB
VCACGTGD
PBM
Lambert et al.(2019)
pTH11370
0.864
0.920
e_gw1.209.40.1
M01756_2.00
Physcomitrella patens
NNCACGTGNN
NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8070
0.853
0.480
LRL2
M06738_2.00
Arabidopsis thaliana
CACGTGSVDMNCACG
CGTGNKHBSCACGTG
Dap-seq
OMalley et al.(2016)
bHLH69_col_a
0.853
0.480
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra025158.1-P
bHLH
17
66
ASKSHSEAERRRRERINTHLAKLRSILPNTTKTDKASLLAEVIQHMKELK
Links
Other
bHLH
family TFs
Other
Brassica rapa
TFs
264 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AMTR_s00010p00144270
Amborella trichopoda
AMTR_s00010p00144270
I
0.914
BHLH32
Arabidopsis thaliana
AT3G25710
I
0.914
Bo2g138630
Brassica oleracea
Bo2g138630
I
0.914
Bo7g081980
Brassica oleracea
Bo7g081980
I
0.914
Bra026510
Brassica rapa
Bra026510
I
0.914
BHLH32
Arabidopsis lyrata
fgenesh2_kg.5__324__AT3G25710.1
I
0.914
Bostr.0556s0241
Boechera stricta
Bostr.0556s0241
I
0.914
Cagra.0417s0002
Capsella grandiflora
Cagra.0417s0002
I
0.914
Carubv10017470m.g
Capsella rubella
Carubv10017470m.g
I
0.914
Thhalv10004524m.g
Eutrema salsugineum
Thhalv10004524m.g
I
0.914
AMTR_s00002p00019320
Amborella trichopoda
AMTR_s00002p00019320
I
0.903
BHLH30
Arabidopsis thaliana
AT1G68810
I
0.894
Bo6g108270
Brassica oleracea
Bo6g108270
I
0.894
Bra004015
Brassica rapa
Bra004015
I
0.894
Bra004338
Brassica rapa
Bra004338
I
0.894
BRADI1G67500
Brachypodium distachyon
BRADI1G67500
I
0.894
F775_10096
Aegilops tauschii
F775_10096
I
0.894
fgenesh2_kg.2__1138__AT1G68810.1
Arabidopsis lyrata
fgenesh2_kg.2__1138__AT1G68810.1
I
0.894
GLYMA01G22530
Glycine max
GLYMA01G22530
I
0.894
GLYMA02G11190
Glycine max
GLYMA02G11190
I
0.894
GRMZM2G043854
Zea mays
GRMZM2G043854
I
0.894
GSMUA_Achr6G30610_001
Musa acuminata
GSMUA_Achr6G30610_001
I
0.894
GSMUA_Achr7G07280_001
Musa acuminata
GSMUA_Achr7G07280_001
I
0.894
LPERR03G10060
Leersia perrieri
LPERR03G10060
I
0.894
MLOC_66385
Hordeum vulgare
MLOC_66385
I
0.894
OB03G21490
Oryza brachyantha
OB03G21490
I
0.894
OBART03G11320
Oryza barthii
OBART03G11320
I
0.894
OGLUM03G11280
Oryza glumaepatula
OGLUM03G11280
I
0.894
OLONG_004075
Oryza longistaminata
OLONG_004075
I
0.894
ONIVA03G12280
Oryza nivara
ONIVA03G12280
I
0.894
ORGLA03G0109100
Oryza glaberrima
ORGLA03G0109100
I
0.894
ORUFI03G11650
Oryza rufipogon
ORUFI03G11650
I
0.894
OS03G0260600
Oryza sativa
OS03G0260600
I
0.894
PGSC0003DMG400000824
Solanum tuberosum
PGSC0003DMG400000824
I
0.894
Sb01g040450
Sorghum bicolor
Sb01g040450
I
0.894
SELMODRAFT_412681
Selaginella moellendorffii
SELMODRAFT_412681
I
0.894
SELMODRAFT_417246
Selaginella moellendorffii
SELMODRAFT_417246
I
0.894
Si039730m.g
Setaria italica
Si039730m.g
I
0.894
Solyc04g006990.2
Solanum lycopersicum
Solyc04g006990.2
I
0.894
Solyc05g009880.2
Solanum lycopersicum
Solyc05g009880.2
I
0.894
Traes_4AS_DD16F89E7
Triticum aestivum
Traes_4AS_DD16F89E7
I
0.894
Traes_4BL_A2B32FCEE
Triticum aestivum
Traes_4BL_A2B32FCEE
I
0.894
Traes_4DL_7BD3165FB
Triticum aestivum
Traes_4DL_7BD3165FB
I
0.894
TRIUR3_31897
Triticum urartu
TRIUR3_31897
I
0.894
Ca_24775
Cicer arietinum
Ca_24775
I
0.894
Cla000223
Citrullus lanatus
Cla000223
I
0.894
Bostr.26959s0001
Boechera stricta
Bostr.26959s0001
I
0.894
Cagra.1157s0003
Capsella grandiflora
Cagra.1157s0003
I
0.894
Carubv10020515m.g
Capsella rubella
Carubv10020515m.g
I
0.894
Pavir.Ib01099
Panicum virgatum
Pavir.Ib01099
I
0.894
Thhalv10018758m.g
Eutrema salsugineum
Thhalv10018758m.g
I
0.894
chr2.CM0749.390.nc
Lotus japonicus
chr2.CM0749.390.nc
I
0.894
Lus10034271.g
Linum usitatissimum
Lus10034271.g
I
0.890
Lus10041493.g
Linum usitatissimum
Lus10041493.g
I
0.890
GSMUA_Achr11G13440_001
Musa acuminata
GSMUA_Achr11G13440_001
I
0.884
BGIOSGA026937
Oryza indica
BGIOSGA026937
I
0.870
BGIOSGA029777
Oryza indica
BGIOSGA029777
I
0.870
Bo6g095860
Brassica oleracea
Bo6g095860
I
0.870
GRMZM2G107276
Zea mays
GRMZM2G107276
I
0.870
GRMZM2G526668
Zea mays
GRMZM2G526668
I
0.870
LPERR08G12910
Leersia perrieri
LPERR08G12910
I
0.870
LPERR09G06880
Leersia perrieri
LPERR09G06880
I
0.870
OBART08G15650
Oryza barthii
OBART08G15650
I
0.870
OGLUM08G16400
Oryza glumaepatula
OGLUM08G16400
I
0.870
OMERI08G12930
Oryza meridionalis
OMERI08G12930
I
0.870
OMERI09G07780
Oryza meridionalis
OMERI09G07780
I
0.870
ONIVA08G16750
Oryza nivara
ONIVA08G16750
I
0.870
ONIVA09G09550
Oryza nivara
ONIVA09G09550
I
0.870
OPUNC08G13730
Oryza punctata
OPUNC08G13730
I
0.870
ORGLA08G0137400
Oryza glaberrima
ORGLA08G0137400
I
0.870
ORUFI08G17560
Oryza rufipogon
ORUFI08G17560
I
0.870
ORUFI09G10670
Oryza rufipogon
ORUFI09G10670
I
0.870
OS08G0432800
Oryza sativa
OS08G0432800
I
0.870
OS09G0410700
Oryza sativa
OS09G0410700
I
0.870
Sb07g021170
Sorghum bicolor
Sb07g021170
I
0.870
Si013911m.g
Setaria italica
Si013911m.g
I
0.870
Solyc07g005400.2
Solanum lycopersicum
Solyc07g005400.2
I
0.865
GLYMA10G34910
Glycine max
GLYMA10G34910
I
0.864
GLYMA20G32660
Glycine max
GLYMA20G32660
I
0.864
GSMUA_Achr1G21280_001
Musa acuminata
GSMUA_Achr1G21280_001
I
0.864
MTR_1g093750
Medicago truncatula
MTR_1g093750
I
0.864
PGSC0003DMG400007457
Solanum tuberosum
PGSC0003DMG400007457
I
0.864
POPTR_0008s11490
Populus trichocarpa
POPTR_0008s11490
I
0.864
POPTR_0010s14010
Populus trichocarpa
POPTR_0010s14010
I
0.864
PRUPE_ppa019406mg
Prunus persica
PRUPE_ppa019406mg
I
0.864
SELMODRAFT_46532
Selaginella moellendorffii
SELMODRAFT_46532
I
0.864
SELMODRAFT_56610
Selaginella moellendorffii
SELMODRAFT_56610
I
0.864
TCM_011873
Theobroma cacao
TCM_011873
I
0.864
VIT_01s0011g02940
Vitis vinifera
VIT_01s0011g02940
I
0.864
Ca_08440
Cicer arietinum
Ca_08440
I
0.864
Cla020671
Citrullus lanatus
Cla020671
I
0.864
Pm029004
Prunus mume
Pm029004
I
0.864
29738.m001043
Ricinus communis
29738.m001043
I
0.864
cassava16550.m1
Manihot esculenta
cassava16550.m1
I
0.864
cassava46299.m1
Manihot esculenta
cassava46299.m1
I
0.864
Cucsa.283920
Cucumis sativus
Cucsa.283920
I
0.864
mgf017635m
Mimulus guttatus
mgf017635m
I
0.864
Aquca_002_01095
Aquilegia coerulea
Aquca_002_01095
I
0.864
Ciclev10031900m.g
Citrus clementina
Ciclev10031900m.g
I
0.864
Eucgr.G02351
Eucalyptus grandis
Eucgr.G02351
I
0.864
evm.TU.supercontig_53.118
Carica papaya
evm.TU.supercontig_53.118
I
0.864
Gorai.008G186700
Gossypium raimondii
Gorai.008G186700
I
0.864
Gorai.013G079600
Gossypium raimondii
Gorai.013G079600
I
0.864
Lus10021711.g
Linum usitatissimum
Lus10021711.g
I
0.864
Lus10035056.g
Linum usitatissimum
Lus10035056.g
I
0.864
MDP0000271420
Malus domestica
MDP0000271420
I
0.864
MDP0000319726
Malus domestica
MDP0000319726
I
0.864
orange1.1g037785m.g
Citrus sinensis
orange1.1g037785m.g
I
0.864
SapurV1A.0079s0530
Salix purpurea
SapurV1A.0079s0530
I
0.864
SapurV1A.0304s0070
Salix purpurea
SapurV1A.0304s0070
I
0.864
SapurV1A.3056s0010
Salix purpurea
SapurV1A.3056s0010
I
0.864
PK07858.1
Cannabis sativa
PK07858.1
D
0.864
BRADI4G29990
Brachypodium distachyon
BRADI4G29990
N
0.858
GRMZM2G176141
Zea mays
GRMZM2G176141
N
0.858
MLOC_12832
Hordeum vulgare
MLOC_12832
N
0.858
PGSC0003DMG400023577
Solanum tuberosum
PGSC0003DMG400023577
N
0.858
Sb02g024460
Sorghum bicolor
Sb02g024460
N
0.858
Si030496m.g
Setaria italica
Si030496m.g
N
0.858
Solyc04g014360.2
Solanum lycopersicum
Solyc04g014360.2
N
0.858
Traes_5BL_CF90A7CAE
Triticum aestivum
Traes_5BL_CF90A7CAE
N
0.858
Aquca_007_00571
Aquilegia coerulea
Aquca_007_00571
N
0.858
AMTR_s00065p00184910
Amborella trichopoda
AMTR_s00065p00184910
I
0.853
BHLH66
Arabidopsis thaliana
AT2G24260
I
0.853
LRL2
Arabidopsis thaliana
AT4G30980
D
0.853
BHLH82
Arabidopsis thaliana
AT5G58010
I
0.853
BGIOSGA021777
Oryza indica
BGIOSGA021777
I
0.853
BGIOSGA029759
Oryza indica
BGIOSGA029759
I
0.853
Bo1g011740
Brassica oleracea
Bo1g011740
I
0.853
Bo2g028920
Brassica oleracea
Bo2g028920
I
0.853
Bo3g018990
Brassica oleracea
Bo3g018990
I
0.853
Bo4g154370
Brassica oleracea
Bo4g154370
I
0.853
Bo8g099910
Brassica oleracea
Bo8g099910
I
0.853
Bo9g133640
Brassica oleracea
Bo9g133640
I
0.853
Bra002679
Brassica rapa
Bra002679
I
0.853
Bra006788
Brassica rapa
Bra006788
I
0.853
Bra007863
Brassica rapa
Bra007863
I
0.853
Bra011237
Brassica rapa
Bra011237
I
0.853
Bra020398
Brassica rapa
Bra020398
I
0.853
Bra032111
Brassica rapa
Bra032111
I
0.853
BRADI1G47350
Brachypodium distachyon
BRADI1G47350
I
0.853
LRL3
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_8001435
I
0.853
LRL1
Arabidopsis lyrata
fgenesh2_kg.4__341__AT2G24260.1
I
0.853
LRL2
Arabidopsis lyrata
fgenesh2_kg.7__1084__AT4G30980.1
I
0.853
GLYMA02G36380
Glycine max
GLYMA02G36380
I
0.853
GLYMA09G14380
Glycine max
GLYMA09G14380
I
0.853
GLYMA15G33020
Glycine max
GLYMA15G33020
I
0.853
GLYMA17G08300
Glycine max
GLYMA17G08300
I
0.853
GRMZM2G027563
Zea mays
GRMZM2G027563
I
0.853
GRMZM2G067654
Zea mays
GRMZM2G067654
I
0.853
GSMUA_Achr10G24090_001
Musa acuminata
GSMUA_Achr10G24090_001
I
0.853
GSMUA_Achr10G30710_001
Musa acuminata
GSMUA_Achr10G30710_001
I
0.853
GSMUA_Achr3G04630_001
Musa acuminata
GSMUA_Achr3G04630_001
I
0.853
GSMUA_Achr4G01910_001
Musa acuminata
GSMUA_Achr4G01910_001
I
0.853
LPERR02G29460
Leersia perrieri
LPERR02G29460
I
0.853
LPERR09G07210
Leersia perrieri
LPERR09G07210
I
0.853
MLOC_38567
Hordeum vulgare
MLOC_38567
I
0.853
MTR_4g131160
Medicago truncatula
MTR_4g131160
I
0.853
OB06G14990
Oryza brachyantha
OB06G14990
I
0.853
OBART06G05420
Oryza barthii
OBART06G05420
I
0.853
OGLUM02G37030
Oryza glumaepatula
OGLUM02G37030
I
0.853
OGLUM06G05610
Oryza glumaepatula
OGLUM06G05610
I
0.853
OGLUM09G10750
Oryza glumaepatula
OGLUM09G10750
I
0.853
OMERI02G33790
Oryza meridionalis
OMERI02G33790
I
0.853
ONIVA02G37880
Oryza nivara
ONIVA02G37880
I
0.853
ONIVA06G06250
Oryza nivara
ONIVA06G06250
I
0.853
ONIVA09G10010
Oryza nivara
ONIVA09G10010
I
0.853
ORGLA02G0311000
Oryza glaberrima
ORGLA02G0311000
I
0.853
ORUFI02G37320
Oryza rufipogon
ORUFI02G37320
I
0.853
ORUFI06G05560
Oryza rufipogon
ORUFI06G05560
I
0.853
OS06G0184000
Oryza sativa
OS06G0184000
I
0.853
PGSC0003DMG400007827
Solanum tuberosum
PGSC0003DMG400007827
I
0.853
PGSC0003DMG400011133
Solanum tuberosum
PGSC0003DMG400011133
I
0.853
POPTR_0018s11800
Populus trichocarpa
POPTR_0018s11800
I
0.853
PRUPE_ppa005254mg
Prunus persica
PRUPE_ppa005254mg
I
0.853
Sb02g024750
Sorghum bicolor
Sb02g024750
I
0.853
Sb04g035890
Sorghum bicolor
Sb04g035890
I
0.853
Sb10g005650
Sorghum bicolor
Sb10g005650
I
0.853
SELMODRAFT_422025
Selaginella moellendorffii
SELMODRAFT_422025
I
0.853
SELMODRAFT_444782
Selaginella moellendorffii
SELMODRAFT_444782
I
0.853
Si017553m.g
Setaria italica
Si017553m.g
I
0.853
Si029708m.g
Setaria italica
Si029708m.g
I
0.853
Solyc12g010170.1
Solanum lycopersicum
Solyc12g010170.1
I
0.853
TCM_037077
Theobroma cacao
TCM_037077
I
0.853
Traes_6AL_FD6EC5EA9
Triticum aestivum
Traes_6AL_FD6EC5EA9
I
0.853
TRIUR3_33768
Triticum urartu
TRIUR3_33768
I
0.853
VIT_11s0037g00040
Vitis vinifera
VIT_11s0037g00040
I
0.853
Ca_03340
Cicer arietinum
Ca_03340
I
0.853
Cla013823
Citrullus lanatus
Cla013823
I
0.853
Cla019007
Citrullus lanatus
Cla019007
I
0.853
Pm027715
Prunus mume
Pm027715
I
0.853
29737.m001209
Ricinus communis
29737.m001209
I
0.853
cassava22164.valid.m1
Manihot esculenta
cassava22164.valid.m1
I
0.853
cassava22165.valid.m1
Manihot esculenta
cassava22165.valid.m1
I
0.853
Cucsa.132830
Cucumis sativus
Cucsa.132830
I
0.853
Cucsa.350940
Cucumis sativus
Cucsa.350940
I
0.853
e_gw1.173.38.1
Physcomitrella patens
e_gw1.173.38.1
I
0.853
e_gw1.209.40.1
Physcomitrella patens
e_gw1.209.40.1
D
0.853
mgf001459m
Mimulus guttatus
mgf001459m
I
0.853
mgf009435m
Mimulus guttatus
mgf009435m
I
0.853
mgf014585m
Mimulus guttatus
mgf014585m
I
0.853
Aquca_016_00200
Aquilegia coerulea
Aquca_016_00200
I
0.853
Bostr.26833s0448
Boechera stricta
Bostr.26833s0448
I
0.853
Bostr.27895s0056
Boechera stricta
Bostr.27895s0056
I
0.853
Bostr.7867s0954
Boechera stricta
Bostr.7867s0954
I
0.853
Cagra.0380s0028
Capsella grandiflora
Cagra.0380s0028
I
0.853
Cagra.2848s0086
Capsella grandiflora
Cagra.2848s0086
I
0.853
Cagra.4091s0032
Capsella grandiflora
Cagra.4091s0032
I
0.853
Carubv10005248m.g
Capsella rubella
Carubv10005248m.g
I
0.853
Carubv10023532m.g
Capsella rubella
Carubv10023532m.g
I
0.853
Carubv10028492m.g
Capsella rubella
Carubv10028492m.g
I
0.853
Ciclev10008192m.g
Citrus clementina
Ciclev10008192m.g
I
0.853
Eucgr.C00360
Eucalyptus grandis
Eucgr.C00360
I
0.853
Eucgr.C02592
Eucalyptus grandis
Eucgr.C02592
I
0.853
evm.TU.contig_30708.1
Carica papaya
evm.TU.contig_30708.1
I
0.853
gene10062-v1.0-hybrid
Fragaria vesca
gene10062-v1.0-hybrid
I
0.853
Gorai.009G055200
Gossypium raimondii
Gorai.009G055200
I
0.853
Lus10021846.g
Linum usitatissimum
Lus10021846.g
I
0.853
MDP0000121522
Malus domestica
MDP0000121522
I
0.853
MDP0000534784
Malus domestica
MDP0000534784
I
0.853
orange1.1g012156m.g
Citrus sinensis
orange1.1g012156m.g
I
0.853
Pavir.Aa00205
Panicum virgatum
Pavir.Aa00205
I
0.853
Pavir.Ab03158
Panicum virgatum
Pavir.Ab03158
I
0.853
Pavir.Ba01914
Panicum virgatum
Pavir.Ba01914
I
0.853
Pavir.Bb02117
Panicum virgatum
Pavir.Bb02117
I
0.853
Pavir.Da02078
Panicum virgatum
Pavir.Da02078
I
0.853
Pavir.J04712
Panicum virgatum
Pavir.J04712
I
0.853
SapurV1A.0100s0120
Salix purpurea
SapurV1A.0100s0120
I
0.853
SapurV1A.0347s0080
Salix purpurea
SapurV1A.0347s0080
I
0.853
Thhalv10000220m.g
Eutrema salsugineum
Thhalv10000220m.g
I
0.853
Thhalv10014212m.g
Eutrema salsugineum
Thhalv10014212m.g
I
0.853
Thhalv10025656m.g
Eutrema salsugineum
Thhalv10025656m.g
I
0.853
PK14040.1
Cannabis sativa
PK14040.1
I
0.853
chr6.CM0037.770.nc
Lotus japonicus
chr6.CM0037.770.nc
I
0.853
Ciclev10020323m.g
Citrus clementina
Ciclev10020323m.g
I
0.852
orange1.1g026943m.g
Citrus sinensis
orange1.1g026943m.g
I
0.852
Aquca_081_00012
Aquilegia coerulea
Aquca_081_00012
I
0.849
OLONG_011765
Oryza longistaminata
OLONG_011765
N
0.848
Gorai.009G230000
Gossypium raimondii
Gorai.009G230000
N
0.847
Pavir.Ba01821
Panicum virgatum
Pavir.Ba01821
N
0.847
Pavir.Bb02155
Panicum virgatum
Pavir.Bb02155
N
0.847
GSMUA_Achr5G29390_001
Musa acuminata
GSMUA_Achr5G29390_001
N
0.846
MTR_5g066080
Medicago truncatula
MTR_5g066080
N
0.846
Ca_14981
Cicer arietinum
Ca_14981
N
0.846
SapurV1A.0596s0110
Salix purpurea
SapurV1A.0596s0110
N
0.845
SapurV1A.2444s0040
Salix purpurea
SapurV1A.2444s0040
N
0.845
BRADI3G36610
Brachypodium distachyon
BRADI3G36610
N
0.842
GLYMA01G02930
Glycine max
GLYMA01G02930
N
0.842
PRUPE_ppa026166mg
Prunus persica
PRUPE_ppa026166mg
N
0.842
TCM_000997
Theobroma cacao
TCM_000997
N
0.842
VIT_08s0040g01240
Vitis vinifera
VIT_08s0040g01240
I
0.842
Ca_18110
Cicer arietinum
Ca_18110
N
0.842
Aquca_004_00748
Aquilegia coerulea
Aquca_004_00748
I
0.842
evm.TU.supercontig_55.51
Carica papaya
evm.TU.supercontig_55.51
N
0.842
Gorai.012G124100
Gossypium raimondii
Gorai.012G124100
N
0.842
GRMZM2G350165
Zea mays
GRMZM2G350165
I
0.841
SELMODRAFT_24890
Selaginella moellendorffii
SELMODRAFT_24890
I
0.841
SELMODRAFT_24892
Selaginella moellendorffii
SELMODRAFT_24892
I
0.841
AMTR_s00007p00170710
Amborella trichopoda
AMTR_s00007p00170710
I
0.840
GLYMA17G19570
Glycine max
GLYMA17G19570
I
0.840
Solyc04g078690.2
Solanum lycopersicum
Solyc04g078690.2
I
0.840
mg025182m
Mimulus guttatus
mg025182m
I
0.840
MDP0000606021
Malus domestica
MDP0000606021
I
0.840
orange1.1g022782m.g
Citrus sinensis
orange1.1g022782m.g
I
0.840
AMTR_s00101p00150740
Amborella trichopoda
AMTR_s00101p00150740
I
0.839