CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra025910
(
Brassica rapa
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00010 (HLH)
IPR001092
Bra025910
T031499_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra025910.1-P
bHLH
140
190
ATDSHSLAERVRRGKINERLRCLQDIVPGCYKSMGMATMLDEIINYVQSLQ
Links
Other
bHLH
family TFs
Other
Brassica rapa
TFs
72 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bo5g025360
Brassica oleracea
Bo5g025360
N
0.914
Thhalv10008517m.g
Eutrema salsugineum
Thhalv10008517m.g
N
0.914
BEE1
Arabidopsis thaliana
AT1G18400
N
0.902
BEE3
Arabidopsis thaliana
AT1G73830
N
0.902
Bo2g080780
Brassica oleracea
Bo2g080780
N
0.902
Bo6g118140
Brassica oleracea
Bo6g118140
N
0.902
Bra008113
Brassica rapa
Bra008113
N
0.902
Bra015960
Brassica rapa
Bra015960
N
0.902
fgenesh1_pm.C_scaffold_1001571
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_1001571
N
0.902
BEE3
Arabidopsis lyrata
fgenesh2_kg.2__1650__AT1G73830.1
N
0.902
Bostr.3288s0027
Boechera stricta
Bostr.3288s0027
N
0.902
Bostr.7128s0442
Boechera stricta
Bostr.7128s0442
N
0.902
Cagra.0876s0016
Capsella grandiflora
Cagra.0876s0016
N
0.902
Cagra.0909s0019
Capsella grandiflora
Cagra.0909s0019
N
0.902
Carubv10009894m.g
Capsella rubella
Carubv10009894m.g
N
0.902
Carubv10020802m.g
Capsella rubella
Carubv10020802m.g
N
0.902
Thhalv10019010m.g
Eutrema salsugineum
Thhalv10019010m.g
N
0.902
PGSC0003DMG400005388
Solanum tuberosum
PGSC0003DMG400005388
I
0.888
Solyc12g036470.1
Solanum lycopersicum
Solyc12g036470.1
I
0.888
PGSC0003DMG400005725
Solanum tuberosum
PGSC0003DMG400005725
N
0.875
POPTR_0012s05210
Populus trichocarpa
POPTR_0012s05210
I
0.875
POPTR_0015s03760
Populus trichocarpa
POPTR_0015s03760
I
0.875
PRUPE_ppa015301mg
Prunus persica
PRUPE_ppa015301mg
I
0.875
Solyc03g119390.2
Solanum lycopersicum
Solyc03g119390.2
N
0.875
TCM_012362
Theobroma cacao
TCM_012362
I
0.875
VIT_17s0000g03580
Vitis vinifera
VIT_17s0000g03580
I
0.875
Cla018783
Citrullus lanatus
Cla018783
I
0.875
Cla019256
Citrullus lanatus
Cla019256
I
0.875
Pm025178
Prunus mume
Pm025178
I
0.875
29974.m000242
Ricinus communis
29974.m000242
I
0.875
Cucsa.111110
Cucumis sativus
Cucsa.111110
I
0.875
mgf013353m
Mimulus guttatus
mgf013353m
I
0.875
Eucgr.B00731
Eucalyptus grandis
Eucgr.B00731
I
0.875
evm.TU.supercontig_3.503
Carica papaya
evm.TU.supercontig_3.503
N
0.875
Gorai.001G074900
Gossypium raimondii
Gorai.001G074900
I
0.875
Gorai.006G060400
Gossypium raimondii
Gorai.006G060400
I
0.875
Gorai.006G194500
Gossypium raimondii
Gorai.006G194500
I
0.875
Gorai.007G005700
Gossypium raimondii
Gorai.007G005700
I
0.875
MDP0000879337
Malus domestica
MDP0000879337
I
0.875
SapurV1A.0530s0010
Salix purpurea
SapurV1A.0530s0010
I
0.875
SapurV1A.0719s0010
Salix purpurea
SapurV1A.0719s0010
I
0.875
SapurV1A.1621s0020
Salix purpurea
SapurV1A.1621s0020
I
0.875
GLYMA05G35060
Glycine max
GLYMA05G35060
N
0.872
GLYMA07G10311
Glycine max
GLYMA07G10311
I
0.872
GLYMA08G04661
Glycine max
GLYMA08G04661
N
0.872
GLYMA09G31580
Glycine max
GLYMA09G31580
I
0.872
Ca_13025
Cicer arietinum
Ca_13025
I
0.872
Lus10009034.g
Linum usitatissimum
Lus10009034.g
I
0.872
Lus10009673.g
Linum usitatissimum
Lus10009673.g
I
0.872
chr4.CM0042.750.nc
Lotus japonicus
chr4.CM0042.750.nc
N
0.872
gene25151-v1.0-hybrid
Fragaria vesca
gene25151-v1.0-hybrid
I
0.863
cassava32072.m1
Manihot esculenta
cassava32072.m1
N
0.860
mgf017044m
Mimulus guttatus
mgf017044m
I
0.851
Eucgr.K02229
Eucalyptus grandis
Eucgr.K02229
I
0.851
MTR_6g084120
Medicago truncatula
MTR_6g084120
N
0.848
Aquca_041_00009
Aquilegia coerulea
Aquca_041_00009
I
0.848
MDP0000779358
Malus domestica
MDP0000779358
N
0.847
POPTR_0004s09850
Populus trichocarpa
POPTR_0004s09850
I
0.840
POPTR_0005s15590
Populus trichocarpa
POPTR_0005s15590
I
0.840
27469.m000162
Ricinus communis
27469.m000162
I
0.840
cassava6194.valid.m1
Manihot esculenta
cassava6194.valid.m1
I
0.840
cassava64.valid.m1
Manihot esculenta
cassava64.valid.m1
I
0.840
Lus10017602.g
Linum usitatissimum
Lus10017602.g
I
0.840
Lus10033562.g
Linum usitatissimum
Lus10033562.g
I
0.840
SapurV1A.0101s0180
Salix purpurea
SapurV1A.0101s0180
I
0.840
SapurV1A.0315s0030
Salix purpurea
SapurV1A.0315s0030
I
0.840
SapurV1A.0781s0030
Salix purpurea
SapurV1A.0781s0030
I
0.840
SapurV1A.4333s0010
Salix purpurea
SapurV1A.4333s0010
I
0.840
AMTR_s00079p00137860
Amborella trichopoda
AMTR_s00079p00137860
I
0.839
GSMUA_Achr1G21010_001
Musa acuminata
GSMUA_Achr1G21010_001
I
0.839
GSMUA_Achr5G23700_001
Musa acuminata
GSMUA_Achr5G23700_001
I
0.839
GSMUA_Achr9G00560_001
Musa acuminata
GSMUA_Achr9G00560_001
I
0.839