Bra041033 (Brassica rapa)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 Bra041033 T031582_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BHLH104
M01706_2.00 		Arabidopsis thaliana
GGCACGTGCC
GGCACGTGCC		 PBM
Weirauch et al.(2014)
pTH7365 		0.911 0.960
BHLH104
M06737_2.00 		Arabidopsis thaliana
GVCACGTGBMDDBHNSDNBH
DVNHSNDVHHKVCACGTGBC		 Dap-seq
OMalley et al.(2016)
bHLH104_col_b 		0.911 0.960
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra041033.1-P bHLH 135 184

Links

Other bHLH family TFs
Other Brassica rapa TFs

24 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BHLH104 Arabidopsis thaliana AT4G14410 D 0.911
bHLH104 Arabidopsis lyrata fgenesh2_kg.7__2895__AT4G14410.2 I 0.911
Bostr.0597s0053 Boechera stricta Bostr.0597s0053 I 0.911
Cagra.1718s0002 Capsella grandiflora Cagra.1718s0002 I 0.911
Carubv10005335m.g Capsella rubella Carubv10005335m.g I 0.911
Thhalv10025927m.g Eutrema salsugineum Thhalv10025927m.g I 0.911
Bo4g126940 Brassica oleracea Bo4g126940 I 0.894
MTR_1g043430 Medicago truncatula MTR_1g043430 I 0.874
Ca_23174 Cicer arietinum Ca_23174 I 0.874
Bo1g102270 Brassica oleracea Bo1g102270 I 0.859
Bo7g040830 Brassica oleracea Bo7g040830 I 0.859
Bra014923 Brassica rapa Bra014923 I 0.859
gene11436-v1.0-hybrid Fragaria vesca gene11436-v1.0-hybrid I 0.859
evm.TU.supercontig_44.78 Carica papaya evm.TU.supercontig_44.78 I 0.856
Cla021854 Citrullus lanatus Cla021854 I 0.854
Cucsa.255290 Cucumis sativus Cucsa.255290 I 0.854
Lus10022186.g Linum usitatissimum Lus10022186.g I 0.854
Solyc10g006510.2 Solanum lycopersicum Solyc10g006510.2 I 0.845
PRUPE_ppa011217mg Prunus persica PRUPE_ppa011217mg I 0.843
Ciclev10005872m.g Citrus clementina Ciclev10005872m.g I 0.843
orange1.1g028060m.g Citrus sinensis orange1.1g028060m.g I 0.843
Gorai.011G172500 Gossypium raimondii Gorai.011G172500 I 0.840
GLYMA10G01010 Glycine max GLYMA10G01010 I 0.839
GLYMA20G22010 Glycine max GLYMA20G22010 I 0.839