CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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BRADI1G05430
(
Brachypodium distachyon
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00010 (HLH)
IPR001092
BRADI1G05430
T031585_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
e_gw1.209.40.1
M01756_2.00
Physcomitrella patens
NNCACGTGNN
NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8070
0.852
0.875
LRL2
M06738_2.00
Arabidopsis thaliana
CACGTGSVDMNCACG
CGTGNKHBSCACGTG
Dap-seq
OMalley et al.(2016)
bHLH69_col_a
0.852
0.833
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
BRADI1G05430.2
bHLH
126
173
DPHSIAERLRRERIAERMRALQELVPNTNKTDRAAMLDEILDYVKFLR
Links
Other
bHLH
family TFs
Other
Brachypodium distachyon
TFs
229 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
LRL2
Arabidopsis thaliana
AT4G30980
D
0.852
e_gw1.209.40.1
Physcomitrella patens
e_gw1.209.40.1
D
0.852
AMTR_s00065p00184910
Amborella trichopoda
AMTR_s00065p00184910
I
0.852
BHLH66
Arabidopsis thaliana
AT2G24260
I
0.852
BHLH82
Arabidopsis thaliana
AT5G58010
I
0.852
BGIOSGA013729
Oryza indica
BGIOSGA013729
I
0.914
BGIOSGA021777
Oryza indica
BGIOSGA021777
I
0.852
BGIOSGA025266
Oryza indica
BGIOSGA025266
I
0.914
BGIOSGA029759
Oryza indica
BGIOSGA029759
I
0.852
Bo1g011740
Brassica oleracea
Bo1g011740
I
0.852
Bo2g028920
Brassica oleracea
Bo2g028920
I
0.852
Bo3g018990
Brassica oleracea
Bo3g018990
I
0.852
Bo4g154370
Brassica oleracea
Bo4g154370
I
0.852
Bo8g099910
Brassica oleracea
Bo8g099910
I
0.852
Bo9g133640
Brassica oleracea
Bo9g133640
I
0.852
Bra002679
Brassica rapa
Bra002679
I
0.852
Bra006788
Brassica rapa
Bra006788
I
0.852
Bra007863
Brassica rapa
Bra007863
I
0.852
Bra011237
Brassica rapa
Bra011237
I
0.852
Bra020398
Brassica rapa
Bra020398
I
0.852
Bra032111
Brassica rapa
Bra032111
I
0.852
BRADI1G47350
Brachypodium distachyon
BRADI1G47350
I
0.852
BRADI1G55427
Brachypodium distachyon
BRADI1G55427
I
0.914
F775_30957
Aegilops tauschii
F775_30957
I
0.888
LRL3
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_8001435
I
0.852
LRL1
Arabidopsis lyrata
fgenesh2_kg.4__341__AT2G24260.1
I
0.852
LRL2
Arabidopsis lyrata
fgenesh2_kg.7__1084__AT4G30980.1
I
0.852
GLYMA02G36380
Glycine max
GLYMA02G36380
I
0.852
GLYMA09G14380
Glycine max
GLYMA09G14380
I
0.852
GLYMA15G33020
Glycine max
GLYMA15G33020
I
0.852
GLYMA17G08300
Glycine max
GLYMA17G08300
I
0.852
GRMZM2G004356
Zea mays
GRMZM2G004356
I
0.914
GRMZM2G027563
Zea mays
GRMZM2G027563
I
0.852
GRMZM2G067654
Zea mays
GRMZM2G067654
I
0.852
GRMZM2G162382
Zea mays
GRMZM2G162382
I
0.914
GRMZM2G350165
Zea mays
GRMZM2G350165
I
0.852
GSMUA_Achr10G24090_001
Musa acuminata
GSMUA_Achr10G24090_001
I
0.852
GSMUA_Achr10G30710_001
Musa acuminata
GSMUA_Achr10G30710_001
I
0.852
GSMUA_Achr4G01910_001
Musa acuminata
GSMUA_Achr4G01910_001
I
0.852
GSMUA_Achr4G21070_001
Musa acuminata
GSMUA_Achr4G21070_001
I
0.902
GSMUA_Achr5G03100_001
Musa acuminata
GSMUA_Achr5G03100_001
I
0.902
GSMUA_Achr5G16470_001
Musa acuminata
GSMUA_Achr5G16470_001
I
0.852
GSMUA_Achr9G25560_001
Musa acuminata
GSMUA_Achr9G25560_001
I
0.902
LPERR02G29460
Leersia perrieri
LPERR02G29460
I
0.852
LPERR03G31640
Leersia perrieri
LPERR03G31640
I
0.914
LPERR07G04600
Leersia perrieri
LPERR07G04600
I
0.914
LPERR09G07210
Leersia perrieri
LPERR09G07210
I
0.852
MLOC_13438
Hordeum vulgare
MLOC_13438
I
0.852
MLOC_38567
Hordeum vulgare
MLOC_38567
I
0.852
MTR_4g131160
Medicago truncatula
MTR_4g131160
I
0.852
OB06G14990
Oryza brachyantha
OB06G14990
I
0.852
OB07G13990
Oryza brachyantha
OB07G13990
I
0.914
OBART03G37400
Oryza barthii
OBART03G37400
I
0.914
OBART06G05420
Oryza barthii
OBART06G05420
I
0.852
OBART07G05280
Oryza barthii
OBART07G05280
I
0.914
OGLUM02G37030
Oryza glumaepatula
OGLUM02G37030
I
0.852
OGLUM03G37150
Oryza glumaepatula
OGLUM03G37150
I
0.914
OGLUM06G05610
Oryza glumaepatula
OGLUM06G05610
I
0.852
OGLUM07G04790
Oryza glumaepatula
OGLUM07G04790
I
0.914
OGLUM09G10750
Oryza glumaepatula
OGLUM09G10750
I
0.852
OLONG_014165
Oryza longistaminata
OLONG_014165
I
0.914
OMERI02G33790
Oryza meridionalis
OMERI02G33790
I
0.852
OMERI03G34570
Oryza meridionalis
OMERI03G34570
I
0.914
OMERI05G15760
Oryza meridionalis
OMERI05G15760
I
0.914
ONIVA02G37880
Oryza nivara
ONIVA02G37880
I
0.852
ONIVA03G38760
Oryza nivara
ONIVA03G38760
I
0.914
ONIVA06G06250
Oryza nivara
ONIVA06G06250
I
0.852
ONIVA07G04020
Oryza nivara
ONIVA07G04020
I
0.914
ONIVA09G10010
Oryza nivara
ONIVA09G10010
I
0.852
OPUNC03G34510
Oryza punctata
OPUNC03G34510
I
0.914
OPUNC07G05040
Oryza punctata
OPUNC07G05040
I
0.914
ORGLA02G0311000
Oryza glaberrima
ORGLA02G0311000
I
0.852
ORGLA06G0244900
Oryza glaberrima
ORGLA06G0244900
I
0.914
ORGLA07G0044500
Oryza glaberrima
ORGLA07G0044500
I
0.914
ORUFI02G37320
Oryza rufipogon
ORUFI02G37320
I
0.852
ORUFI06G05560
Oryza rufipogon
ORUFI06G05560
I
0.852
ORUFI07G05060
Oryza rufipogon
ORUFI07G05060
I
0.914
OS03G0797600
Oryza sativa
OS03G0797600
I
0.914
OS06G0184000
Oryza sativa
OS06G0184000
I
0.852
PGSC0003DMG400007827
Solanum tuberosum
PGSC0003DMG400007827
I
0.852
PGSC0003DMG400011133
Solanum tuberosum
PGSC0003DMG400011133
I
0.852
POPTR_0018s11800
Populus trichocarpa
POPTR_0018s11800
I
0.852
PRUPE_ppa005254mg
Prunus persica
PRUPE_ppa005254mg
I
0.852
Sb01g005130
Sorghum bicolor
Sb01g005130
I
0.888
Sb02g004570
Sorghum bicolor
Sb02g004570
I
0.914
Sb02g024750
Sorghum bicolor
Sb02g024750
I
0.852
Sb04g035890
Sorghum bicolor
Sb04g035890
I
0.852
Sb10g005650
Sorghum bicolor
Sb10g005650
I
0.852
SELMODRAFT_24890
Selaginella moellendorffii
SELMODRAFT_24890
I
0.852
SELMODRAFT_24892
Selaginella moellendorffii
SELMODRAFT_24892
I
0.852
SELMODRAFT_422025
Selaginella moellendorffii
SELMODRAFT_422025
I
0.852
SELMODRAFT_444782
Selaginella moellendorffii
SELMODRAFT_444782
I
0.852
Si017553m.g
Setaria italica
Si017553m.g
I
0.852
Si029708m.g
Setaria italica
Si029708m.g
I
0.852
Si030704m.g
Setaria italica
Si030704m.g
I
0.914
Si036929m.g
Setaria italica
Si036929m.g
I
0.914
Solyc07g005400.2
Solanum lycopersicum
Solyc07g005400.2
I
0.841
Solyc12g010170.1
Solanum lycopersicum
Solyc12g010170.1
I
0.852
TCM_037077
Theobroma cacao
TCM_037077
I
0.852
Traes_5BL_DB5410008
Triticum aestivum
Traes_5BL_DB5410008
I
0.888
Traes_5DL_1CD573458
Triticum aestivum
Traes_5DL_1CD573458
I
0.888
Traes_6AL_FD6EC5EA9
Triticum aestivum
Traes_6AL_FD6EC5EA9
I
0.852
TRIUR3_33768
Triticum urartu
TRIUR3_33768
I
0.852
VIT_11s0037g00040
Vitis vinifera
VIT_11s0037g00040
I
0.852
Ca_03340
Cicer arietinum
Ca_03340
I
0.852
Cla013823
Citrullus lanatus
Cla013823
I
0.852
Cla019007
Citrullus lanatus
Cla019007
I
0.852
Pm027715
Prunus mume
Pm027715
I
0.852
29737.m001209
Ricinus communis
29737.m001209
I
0.852
cassava22164.valid.m1
Manihot esculenta
cassava22164.valid.m1
I
0.852
cassava22165.valid.m1
Manihot esculenta
cassava22165.valid.m1
I
0.852
Cucsa.132830
Cucumis sativus
Cucsa.132830
I
0.852
Cucsa.350940
Cucumis sativus
Cucsa.350940
I
0.852
e_gw1.173.38.1
Physcomitrella patens
e_gw1.173.38.1
I
0.852
mgf001459m
Mimulus guttatus
mgf001459m
I
0.852
mgf009435m
Mimulus guttatus
mgf009435m
I
0.852
mgf014585m
Mimulus guttatus
mgf014585m
I
0.852
Aquca_016_00200
Aquilegia coerulea
Aquca_016_00200
I
0.852
Bostr.26833s0448
Boechera stricta
Bostr.26833s0448
I
0.852
Bostr.27895s0056
Boechera stricta
Bostr.27895s0056
I
0.852
Bostr.7867s0954
Boechera stricta
Bostr.7867s0954
I
0.852
Cagra.0380s0028
Capsella grandiflora
Cagra.0380s0028
I
0.852
Cagra.2848s0086
Capsella grandiflora
Cagra.2848s0086
I
0.852
Cagra.4091s0032
Capsella grandiflora
Cagra.4091s0032
I
0.852
Carubv10005248m.g
Capsella rubella
Carubv10005248m.g
I
0.852
Carubv10023532m.g
Capsella rubella
Carubv10023532m.g
I
0.852
Carubv10028492m.g
Capsella rubella
Carubv10028492m.g
I
0.852
Ciclev10008192m.g
Citrus clementina
Ciclev10008192m.g
I
0.852
Eucgr.C00360
Eucalyptus grandis
Eucgr.C00360
I
0.852
Eucgr.C02592
Eucalyptus grandis
Eucgr.C02592
I
0.852
evm.TU.contig_30708.1
Carica papaya
evm.TU.contig_30708.1
I
0.852
gene10062-v1.0-hybrid
Fragaria vesca
gene10062-v1.0-hybrid
I
0.852
Gorai.009G055200
Gossypium raimondii
Gorai.009G055200
I
0.852
Lus10021846.g
Linum usitatissimum
Lus10021846.g
I
0.852
MDP0000121522
Malus domestica
MDP0000121522
I
0.852
MDP0000534784
Malus domestica
MDP0000534784
I
0.852
MDP0000606021
Malus domestica
MDP0000606021
I
0.840
orange1.1g012156m.g
Citrus sinensis
orange1.1g012156m.g
I
0.852
Pavir.Aa00205
Panicum virgatum
Pavir.Aa00205
I
0.852
Pavir.Ab03158
Panicum virgatum
Pavir.Ab03158
I
0.852
Pavir.Ba01914
Panicum virgatum
Pavir.Ba01914
I
0.852
Pavir.Ba03672
Panicum virgatum
Pavir.Ba03672
I
0.914
Pavir.Bb02117
Panicum virgatum
Pavir.Bb02117
I
0.852
Pavir.Da02078
Panicum virgatum
Pavir.Da02078
I
0.852
Pavir.J00283
Panicum virgatum
Pavir.J00283
I
0.914
Pavir.J03221
Panicum virgatum
Pavir.J03221
I
0.914
Pavir.J04249
Panicum virgatum
Pavir.J04249
I
0.914
Pavir.J04712
Panicum virgatum
Pavir.J04712
I
0.852
SapurV1A.0100s0120
Salix purpurea
SapurV1A.0100s0120
I
0.852
SapurV1A.0347s0080
Salix purpurea
SapurV1A.0347s0080
I
0.852
Thhalv10000220m.g
Eutrema salsugineum
Thhalv10000220m.g
I
0.852
Thhalv10014212m.g
Eutrema salsugineum
Thhalv10014212m.g
I
0.852
Thhalv10025656m.g
Eutrema salsugineum
Thhalv10025656m.g
I
0.852
PK14040.1
Cannabis sativa
PK14040.1
I
0.852
chr6.CM0037.770.nc
Lotus japonicus
chr6.CM0037.770.nc
I
0.852
AT1G03040
Arabidopsis thaliana
AT1G03040
N
0.861
UNE12
Arabidopsis thaliana
AT4G02590
N
0.861
Bo01031s030
Brassica oleracea
Bo01031s030
N
0.861
Bo2g100750
Brassica oleracea
Bo2g100750
N
0.861
Bo5g003580
Brassica oleracea
Bo5g003580
N
0.861
Bo9g005930
Brassica oleracea
Bo9g005930
N
0.861
Bra000872
Brassica rapa
Bra000872
N
0.861
Bra018539
Brassica rapa
Bra018539
N
0.861
Bra033368
Brassica rapa
Bra033368
N
0.861
Bra036256
Brassica rapa
Bra036256
N
0.861
fgenesh2_kg.1__235__AT1G03040.1
Arabidopsis lyrata
fgenesh2_kg.1__235__AT1G03040.1
N
0.861
UNE12
Arabidopsis lyrata
fgenesh2_kg.6__3435__AT4G02590.2
N
0.861
GLYMA02G16110
Glycine max
GLYMA02G16110
N
0.861
GLYMA03G31510
Glycine max
GLYMA03G31510
N
0.861
GLYMA10G03690
Glycine max
GLYMA10G03690
N
0.861
GLYMA10G30430
Glycine max
GLYMA10G30430
N
0.873
GLYMA19G34360
Glycine max
GLYMA19G34360
N
0.861
GLYMA20G36770
Glycine max
GLYMA20G36770
N
0.873
MTR_1g070870
Medicago truncatula
MTR_1g070870
N
0.861
MTR_1g080890
Medicago truncatula
MTR_1g080890
N
0.873
PGSC0003DMG400006089
Solanum tuberosum
PGSC0003DMG400006089
N
0.872
PGSC0003DMG400013393
Solanum tuberosum
PGSC0003DMG400013393
N
0.872
POPTR_0002s04620
Populus trichocarpa
POPTR_0002s04620
N
0.861
PRUPE_ppa008172mg
Prunus persica
PRUPE_ppa008172mg
N
0.873
PRUPE_ppa009299mg
Prunus persica
PRUPE_ppa009299mg
N
0.861
Solyc03g005350.2
Solanum lycopersicum
Solyc03g005350.2
N
0.870
Solyc09g083220.2
Solanum lycopersicum
Solyc09g083220.2
N
0.872
TCM_004217
Theobroma cacao
TCM_004217
N
0.861
TCM_026346
Theobroma cacao
TCM_026346
N
0.873
VIT_05s0020g04620
Vitis vinifera
VIT_05s0020g04620
N
0.873
VIT_07s0141g00220
Vitis vinifera
VIT_07s0141g00220
N
0.861
VIT_14s0030g02230
Vitis vinifera
VIT_14s0030g02230
N
0.873
Ca_03755
Cicer arietinum
Ca_03755
N
0.873
Ca_07790
Cicer arietinum
Ca_07790
N
0.861
Ca_12194
Cicer arietinum
Ca_12194
N
0.861
Cla011475
Citrullus lanatus
Cla011475
N
0.873
Cla015040
Citrullus lanatus
Cla015040
N
0.861
Pm003525
Prunus mume
Pm003525
N
0.873
Pm020229
Prunus mume
Pm020229
N
0.861
29598.m000464
Ricinus communis
29598.m000464
N
0.873
29883.m001988
Ricinus communis
29883.m001988
N
0.861
cassava18573.valid.m1
Manihot esculenta
cassava18573.valid.m1
N
0.873
cassava22704.valid.m1
Manihot esculenta
cassava22704.valid.m1
N
0.860
cassava36725.valid.m1
Manihot esculenta
cassava36725.valid.m1
N
0.861
Cucsa.289090
Cucumis sativus
Cucsa.289090
N
0.873
Cucsa.388780
Cucumis sativus
Cucsa.388780
N
0.861
Aquca_017_00590
Aquilegia coerulea
Aquca_017_00590
N
0.873
Bostr.2983s0202
Boechera stricta
Bostr.2983s0202
N
0.861
Cagra.0635s0023
Capsella grandiflora
Cagra.0635s0023
N
0.861
Cagra.0897s0074
Capsella grandiflora
Cagra.0897s0074
N
0.861
Carubv10001523m.g
Capsella rubella
Carubv10001523m.g
N
0.861
Carubv10009831m.g
Capsella rubella
Carubv10009831m.g
N
0.861
Ciclev10001768m.g
Citrus clementina
Ciclev10001768m.g
N
0.852
Ciclev10021443m.g
Citrus clementina
Ciclev10021443m.g
N
0.861
Eucgr.B01487
Eucalyptus grandis
Eucgr.B01487
N
0.861
Eucgr.H04337
Eucalyptus grandis
Eucgr.H04337
N
0.873
evm.TU.supercontig_117.94
Carica papaya
evm.TU.supercontig_117.94
N
0.873
gene08188-v1.0-hybrid
Fragaria vesca
gene08188-v1.0-hybrid
N
0.861
gene16564-v1.0-hybrid
Fragaria vesca
gene16564-v1.0-hybrid
N
0.873
Gorai.001G242500
Gossypium raimondii
Gorai.001G242500
N
0.861
Gorai.007G141800
Gossypium raimondii
Gorai.007G141800
N
0.861
Gorai.007G277200
Gossypium raimondii
Gorai.007G277200
N
0.873
Lus10006587.g
Linum usitatissimum
Lus10006587.g
N
0.873
Lus10015909.g
Linum usitatissimum
Lus10015909.g
N
0.873
MDP0000176749
Malus domestica
MDP0000176749
N
0.861
MDP0000295593
Malus domestica
MDP0000295593
N
0.873
orange1.1g022649m.g
Citrus sinensis
orange1.1g022649m.g
N
0.861
SapurV1A.0006s1290
Salix purpurea
SapurV1A.0006s1290
N
0.861
Thhalv10008279m.g
Eutrema salsugineum
Thhalv10008279m.g
N
0.861
Thhalv10028824m.g
Eutrema salsugineum
Thhalv10028824m.g
N
0.861
PK20184.1
Cannabis sativa
PK20184.1
N
0.873
PK25419.1
Cannabis sativa
PK25419.1
N
0.861
chr1.CM0375.380.nc
Lotus japonicus
chr1.CM0375.380.nc
N
0.861
chr5.LjT29J15.30.nc
Lotus japonicus
chr5.LjT29J15.30.nc
N
0.860