CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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CGI_10026909
(
Crassostrea gigas
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00010 (HLH)
IPR001092
CGI_10026909
T032148_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Tfap4
M01717_2.00
Mus musculus
VHCABVYGB
VCRBVTGDB
PBM
Weirauch et al.(2014)
pTH5067
0.903
0.885
TFAP4
M02776_2.00
Homo sapiens
AWCAGCTGWY
RWCAGCTGWT
SELEX
Jolma et al.(2013)
TFAP4_1
0.903
0.885
TFAP4
M02777_2.00
Homo sapiens
AWCAGCTGWT
AWCAGCTGWT
SELEX
Jolma et al.(2013)
TFAP4_2
0.903
0.885
TFAP4
M04066_2.00
Homo sapiens
VHCAKVTGDB
VHCABMTGDB
SELEX
Yin et al.(2017)
TFAP4_eDBD_HT-SELEX_1
0.903
0.885
TFAP4
M04067_2.00
Homo sapiens
VWCAGCTGWB
VWCAGCTGWB
SELEX
Yin et al.(2017)
TFAP4_eDBD_HT-SELEX_2
0.903
0.885
TFAP4
M04070_2.00
Homo sapiens
RHCAYVTGDB
VHCABRTGDY
SELEX
Yin et al.(2017)
TFAP4_FL_HT-SELEX_1
0.903
0.885
TFAP4
M04071_2.00
Homo sapiens
VHCAGCTGDB
VHCAGCTGDB
SELEX
Yin et al.(2017)
TFAP4_FL_HT-SELEX_2
0.903
0.885
TFAP4
M08712_2.00
Homo sapiens
VMNCAGCTGR
YCAGCTGNKB
Misc
Kulakovskiy et al.(2013)
TFAP4_HUMAN.H11MO.0.A
0.903
0.885
TFAP4
M09453_2.00
Homo sapiens
NVHCAGCTGD
HCAGCTGDBN
Misc
Heinz et al.(2010)
AML-Tfap4_GSE45738
0.903
0.885
TFAP4
M09802_2.00
Homo sapiens
MNGNCHVCAGCTGDBBBW
WVVVHCAGCTGBDGNCNK
Transfac
Matys et al.(2006)
V$AP4_01
0.903
0.885
TFAP4
M09803_2.00
Homo sapiens
NNSAGCTGHB
VDCAGCTSNN
Transfac
Matys et al.(2006)
V$AP4_Q5
0.903
0.885
TFAP4
M09804_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AP4_Q6_01
0.903
0.885
TFAP4
M09805_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AP4_Q6_02
0.903
0.885
TFAP4
M09806_2.00
Homo sapiens
NVCAGCTGHB
VDCAGCTGBN
Transfac
Matys et al.(2006)
V$AP4_Q6
0.903
0.885
TFAP4
M04068_2.00
Homo sapiens
DHCABMTGDN
NHCAKVTGDH
SELEX
Yin et al.(2017)
TFAP4_eDBD_Methyl-HT-SELEX_1
0.903
0.885
TFAP4
M04069_2.00
Homo sapiens
AWCAGCTGWT
AWCAGCTGWT
SELEX
Yin et al.(2017)
TFAP4_eDBD_Methyl-HT-SELEX_2
0.903
0.885
TFAP4
M04072_2.00
Homo sapiens
VHCABVTGDB
VHCABVTGDB
SELEX
Yin et al.(2017)
TFAP4_FL_Methyl-HT-SELEX_1
0.903
0.885
TFAP4
M04073_2.00
Homo sapiens
VHCAGCTGDB
VHCAGCTGDB
SELEX
Yin et al.(2017)
TFAP4_FL_Methyl-HT-SELEX_2
0.903
0.885
crp
M03595_2.00
Drosophila melanogaster
AACAGCTGWT
AWCAGCTGTT
SELEX
Nitta et al.(2015)
crp_1
0.843
0.827
crp
M05937_2.00
Drosophila melanogaster
VAHCAGCTGAY
RTCAGCTGDWB
B1H
Zhu et al.(2011)
crp_SANGER_10_FBgn0001994
0.843
0.827
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
EKC37625
bHLH
47
98
RREIANSNERRRMQSINAGFQSLKSLIPHSDGEKLSKAAILQQTSDYIQQLE
Links
Other
bHLH
family TFs
Other
Crassostrea gigas
TFs
100 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ACYPI003006
Acyrthosiphon pisum
ACYPI003006
I
0.854
AGAP010201
Anopheles gambiae
AGAP010201
I
0.873
Alligator_sinensis_CCG004455.1
Alligator sinensis
Alligator_sinensis_CCG004455.1
I
0.903
BGIBMGA010353
Bombyx mori
BGIBMGA010353
I
0.843
CapteG45346
Capitella teleta
CapteG45346
I
0.903
Cmyd_10017689
Chelonia mydas
Cmyd_10017689
I
0.903
TFAP4
Anolis carolinensis
ENSACAG00000016352
I
0.903
ENSAMEG00000002016
Ailuropoda melanoleuca
ENSAMEG00000002016
I
0.903
ENSAPLG00000013446
Anas platyrhynchos
ENSAPLG00000013446
I
0.879
TFAP4
Bos taurus
ENSBTAG00000033174
I
0.903
TFAP4
Canis familiaris
ENSCAFG00000019231
I
0.903
ENSCING00000014406
Ciona intestinalis
ENSCING00000014406
I
0.901
TFAP4
Callithrix jacchus
ENSCJAG00000019756
I
0.903
TFAP4
Cavia porcellus
ENSCPOG00000004174
I
0.903
ENSCSAG00000009620
Chlorocebus sabaeus
ENSCSAG00000009620
I
0.903
ENSCSAVG00000000333
Ciona savignyi
ENSCSAVG00000000333
I
0.901
tfap4
Danio rerio
ENSDARG00000103923
I
0.903
TFAP4
Dasypus novemcinctus
ENSDNOG00000039193
I
0.903
Tfap4
Dipodomys ordii
ENSDORG00000004656
I
0.903
TFAP4
Equus caballus
ENSECAG00000022311
I
0.903
TFAP4
Erinaceus europaeus
ENSEEUG00000006004
I
0.903
TFAP4
Echinops telfairi
ENSETEG00000008634
I
0.903
ENSFALG00000004331
Ficedula albicollis
ENSFALG00000004331
I
0.903
TFAP4
Felis catus
ENSFCAG00000011227
I
0.903
TFAP4
Homo sapiens
ENSG00000090447
D
0.903
tfap4
Gasterosteus aculeatus
ENSGACG00000011329
I
0.883
tfap4
Gasterosteus aculeatus
ENSGACG00000018768
I
0.882
TFAP4
Gorilla gorilla
ENSGGOG00000000451
I
0.903
ENSGMOG00000014930
Gadus morhua
ENSGMOG00000014930
I
0.903
ENSGMOG00000015232
Gadus morhua
ENSGMOG00000015232
I
0.912
ENSLACG00000000328
Latimeria chalumnae
ENSLACG00000000328
I
0.903
TFAP4
Loxodonta africana
ENSLAFG00000022341
I
0.903
ENSLOCG00000002626
Lepisosteus oculatus
ENSLOCG00000002626
I
0.903
ENSMEUG00000000888
Macropus eugenii
ENSMEUG00000000888
I
0.903
TFAP4
Meleagris gallopavo
ENSMGAG00000009411
I
0.903
TFAP4
Myotis lucifugus
ENSMLUG00000005725
I
0.903
TFAP4
Monodelphis domestica
ENSMODG00000016377
I
0.903
ENSMPUG00000015023
Mustela putorius furo
ENSMPUG00000015023
I
0.903
Tfap4
Mus musculus
ENSMUSG00000005718
D
0.903
ENSNLEG00000009797
Nomascus leucogenys
ENSNLEG00000009797
I
0.903
TFAP4
Ornithorhynchus anatinus
ENSOANG00000019858
I
0.903
ENSOARG00000003120
Ovis aries
ENSOARG00000003120
I
0.903
TFAP4
Oryctolagus cuniculus
ENSOCUG00000024550
I
0.903
TFAP4
Otolemur garnettii
ENSOGAG00000008955
I
0.903
ENSONIG00000005196
Oreochromis niloticus
ENSONIG00000005196
I
0.903
ENSONIG00000016338
Oreochromis niloticus
ENSONIG00000016338
I
0.901
ENSOPRG00000001061
Ochotona princeps
ENSOPRG00000001061
I
0.903
tfap4
Oryzias latipes
ENSORLG00000008286
I
0.903
tfap4
Oryzias latipes
ENSORLG00000015050
I
0.901
ENSP00000204517
Macaca fascicularis
ENSP00000204517
I
0.903
ENSP00000204517-D1
Bos grunniens
ENSP00000204517-D1
I
0.903
ENSPANG00000010499
Papio anubis
ENSPANG00000010499
I
0.903
TFAP4
Procavia capensis
ENSPCAG00000011134
I
0.903
ENSPFOG00000000836
Poecilia formosa
ENSPFOG00000000836
I
0.901
ENSPFOG00000011355
Poecilia formosa
ENSPFOG00000011355
I
0.903
ENSPPYG00000007054
Pongo abelii
ENSPPYG00000007054
I
0.903
ENSPSIG00000009002
Pelodiscus sinensis
ENSPSIG00000009002
I
0.903
TFAP4
Pan troglodytes
ENSPTRG00000007713
I
0.903
ENSPVAG00000005418
Pteropus vampyrus
ENSPVAG00000005418
I
0.903
Tfap4
Rattus norvegicus
ENSRNOG00000005227
I
0.903
ENSSHAG00000011487
Sarcophilus harrisii
ENSSHAG00000011487
I
0.903
ENSSTOG00000028040
Ictidomys tridecemlineatus
ENSSTOG00000028040
I
0.903
TFAP4
Tupaia belangeri
ENSTBEG00000014089
I
0.903
tfap4
Tetraodon nigroviridis
ENSTNIG00000002015
I
0.901
tfap4
Tetraodon nigroviridis
ENSTNIG00000009740
I
0.903
tfap4
Tetraodon nigroviridis
ENSTNIG00000014095
I
0.901
tfap4
Takifugu rubripes
ENSTRUG00000006111
I
0.903
tfap4
Takifugu rubripes
ENSTRUG00000013344
I
0.901
TFAP4
Tursiops truncatus
ENSTTRG00000002710
I
0.903
TFAP4
Vicugna pacos
ENSVPAG00000008001
I
0.903
ENSXMAG00000004632
Xiphophorus maculatus
ENSXMAG00000004632
I
0.903
ENSXMAG00000011968
Xiphophorus maculatus
ENSXMAG00000011968
I
0.901
estExt_fgenesh2_pg.C_3260041
Branchiostoma floridae
estExt_fgenesh2_pg.C_3260041
I
0.903
crp
Drosophila melanogaster
FBgn0001994
D
0.843
GA20511
Drosophila pseudoobscura
FBgn0080505
I
0.843
GF21721
Drosophila ananassae
FBgn0098721
I
0.843
GG24179
Drosophila erecta
FBgn0116312
I
0.843
GH10096
Drosophila grimshawi
FBgn0117577
I
0.843
GI14377
Drosophila mojavensis
FBgn0137129
I
0.843
GL14101
Drosophila persimilis
FBgn0151706
I
0.843
GM17917
Drosophila sechellia
FBgn0172824
I
0.843
GD21926
Drosophila simulans
FBgn0193342
I
0.843
GJ16254
Drosophila virilis
FBgn0203439
I
0.843
GK24289
Drosophila willistoni
FBgn0226250
I
0.843
GE19372
Drosophila yakuba
FBgn0236717
I
0.843
fgenesh2_pg.scaffold_326000054
Branchiostoma floridae
fgenesh2_pg.scaffold_326000054
I
0.903
GB48999
Apis mellifera
GB48999
I
0.873
HMEL008759
Heliconius melpomene
HMEL008759
I
0.843
KGM_15765
Danaus plexippus
KGM_15765
I
0.843
L798_07621
Zootermopsis nevadensis
L798_07621
I
0.873
LLOJ009485
Lutzomyia longipalpis
LLOJ009485
I
0.873
MDOA012071
Musca domestica
MDOA012071
I
0.854
Myotis_brandtii_TFAP4_10028039
Myotis brandtii
Myotis_brandtii_TFAP4_10028039
I
0.903
Ogr05167
Ophisaurus gracilis
Ogr05167
I
0.903
Pvit_18996
Pogona vitticeps
Pvit_18996
I
0.903
Sakowv30040946m.g
Saccoglossus kowalevskii
Sakowv30040946m.g
I
0.892
SPU_003179
Strongylocentrotus purpuratus
SPU_003179
I
0.841
TCLT_0000678201
Thelazia callipaeda
TCLT_0000678201
I
0.846
tetur30g00270
Tetranychus urticae
tetur30g00270
I
0.849
tfap4
Xenopus tropicalis
XB-GENE-999265
I
0.903