CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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NHLH2
(
Cavia porcellus
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00010 (HLH)
IPR001092
ENSCPOG00000026593
T033473_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Nhlh2
M00756_2.00
Mus musculus
NKCAGCTGHN
NDCAGCTGMN
PBM
Weirauch et al.(2013)
pTH3037
0.914
1.000
NHLH2
M04177_2.00
Homo sapiens
DDGNMGCAGCTGCGYCMH
DKGRCGCAGCTGCKNCHH
SELEX
Yin et al.(2017)
NHLH2_FL_HT-SELEX
0.914
1.000
NHLH2
M09878_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HEN2_Q2
0.914
1.000
NHLH2
M04178_2.00
Homo sapiens
DGGNMBCAGCTGCGYCCH
DGGRCGCAGCTGVKNCCH
SELEX
Yin et al.(2017)
NHLH2_FL_Methyl-HT-SELEX
0.914
1.000
NHLH1
M02796_2.00
Homo sapiens
CGCAGCTGCB
VGCAGCTGCG
SELEX
Jolma et al.(2013)
NHLH1_1
0.914
0.981
NHLH1
M02797_2.00
Homo sapiens
VGCAGCTGCK
MGCAGCTGCB
SELEX
Jolma et al.(2013)
NHLH1_2
0.914
0.981
NHLH1
M04162_2.00
Homo sapiens
NDGNMKCAGCTGCGYCMH
DKGRCGCAGCTGMKNCHN
SELEX
Yin et al.(2017)
NHLH1_eDBD_HT-SELEX
0.914
0.981
NHLH1
M04164_2.00
Homo sapiens
NDGNMKCAGCTGCGYCMH
DKGRCGCAGCTGMKNCHN
SELEX
Yin et al.(2017)
NHLH1_FL_HT-SELEX
0.914
0.981
Nhlh1
M08773_2.00
Mus musculus
BKGGNMNCAGCTGCGBCCYY
RRGGVCGCAGCTGNKNCCMV
Misc
Kulakovskiy et al.(2013)
HEN1_MOUSE.H11MO.0.C
0.914
0.981
NHLH1
M09875_2.00
Homo sapiens
NNDGGNMVCAGCTGVGNCCNNN
NNNGGNCBCAGCTGBKNCCHNN
Transfac
Matys et al.(2006)
V$HEN1_01
0.914
0.981
NHLH1
M09876_2.00
Homo sapiens
NDRGGVMGCAGCTGMKNCCHHN
NDDGGNMKCAGCTGCKBCCYHN
Transfac
Matys et al.(2006)
V$HEN1_02
0.914
0.981
NHLH1
M04163_2.00
Homo sapiens
NRGBMKCAGCTGCGYCCH
DGGRCGCAGCTGMKVCYN
SELEX
Yin et al.(2017)
NHLH1_eDBD_Methyl-HT-SELEX
0.914
0.981
NHLH1
M04165_2.00
Homo sapiens
DGGNMBCAGCTGCGYCCH
DGGRCGCAGCTGVKNCCH
SELEX
Yin et al.(2017)
NHLH1_FL_Methyl-HT-SELEX
0.914
0.981
HLH4C
M03609_2.00
Drosophila melanogaster
DDNCRCAGCTGYGNHH
DDNCRCAGCTGYGNHH
SELEX
Nitta et al.(2015)
HLH4C_1
0.891
0.904
HLH4C
M03610_2.00
Drosophila melanogaster
DRSMYCAGCTGVKSYH
DRSMBCAGCTGRKSYH
SELEX
Nitta et al.(2015)
HLH4C_2
0.891
0.904
HLH4C
M03611_2.00
Drosophila melanogaster
NRBMYCAGCTGYGNHH
DDNCRCAGCTGRKVYN
SELEX
Nitta et al.(2015)
HLH4C_3
0.891
0.904
HLH4C
M05963_2.00
Drosophila melanogaster
CACCTGMDCC
GGHKCAGGTG
B1H
Zhu et al.(2011)
HLH4C_da_SANGER_5_3_FBgn0011277
0.891
0.904
HLH4C
M05964_2.00
Drosophila melanogaster
MCAYCTGMGMMM
KKKCKCAGRTGK
B1H
Zhu et al.(2011)
HLH4C_da_SANGER_5_4_FBgn0011277
0.891
0.904
HLH4C
M05965_2.00
Drosophila melanogaster
VNHHVCACCTGMBNC
GNVKCAGGTGBDDNB
B1H
Zhu et al.(2011)
HLH4C_da_SANGER_5_FBgn0011277
0.891
0.904
HLH4C
M05966_2.00
Drosophila melanogaster
RGSMYCAGCTGCGYY
RRCGCAGCTGRKSCY
B1H
Zhu et al.(2011)
HLH4C_SANGER_5_FBgn0011277
0.891
0.904
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCPOP00000015430
bHLH
78
130
YRSAHATRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILRLAICYISYLN
Links
Other
bHLH
family TFs
Other
Cavia porcellus
TFs
170 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Aan_R007988
Calypte anna
Aan_R007988
N
ACEP14936
Atta cephalotes
ACEP14936
N
ACEP21807
Atta cephalotes
ACEP21807
N
Afo_R000495
Aptenodytes forsteri
Afo_R000495
N
Alligator_sinensis_CCG000862.1
Alligator sinensis
Alligator_sinensis_CCG000862.1
N
Brh_R013374
Buceros rhinoceros
Brh_R013374
N
Cflo_02462--XP_391937.2_APIME
Camponotus floridanus
Cflo_02462--XP_391937.2_APIME
N
Cmyd_10005570
Chelonia mydas
Cmyd_10005570
N
CPIJ006378
Culex quinquefasciatus
CPIJ006378
N
CpipJ_CPIJ006378
Culex pipiens
CpipJ_CPIJ006378
N
ENSAMEG00000018716
Ailuropoda melanoleuca
ENSAMEG00000018716
N
ENSAMXG00000020327
Astyanax mexicanus
ENSAMXG00000020327
N
ENSAPLG00000000714
Anas platyrhynchos
ENSAPLG00000000714
N
NPAS1
Bos taurus
ENSBTAG00000015576
N
NPAS1
Canis familiaris
ENSCAFG00000032405
N
NPAS3
Choloepus hoffmanni
ENSCHOG00000013756
N
NPAS3
Callithrix jacchus
ENSCJAG00000005437
N
NPAS1
Callithrix jacchus
ENSCJAG00000011666
N
NPAS3
Cavia porcellus
ENSCPOG00000006976
N
NPAS1
Cavia porcellus
ENSCPOG00000023069
N
ENSCSAG00000003006
Chlorocebus sabaeus
ENSCSAG00000003006
N
npas1
Danio rerio
ENSDARG00000015876
N
NPAS1
Dasypus novemcinctus
ENSDNOG00000035321
N
Npas3
Dipodomys ordii
ENSDORG00000000860
N
ENSECAG00000004630
Equus caballus
ENSECAG00000004630
N
NPAS3
Erinaceus europaeus
ENSEEUG00000006528
N
NPAS3
Echinops telfairi
ENSETEG00000016603
N
NPAS1
Felis catus
ENSFCAG00000004833
N
NPAS1
Homo sapiens
ENSG00000130751
N
NPAS3
Homo sapiens
ENSG00000151322
N
NPAS3
Gallus gallus
ENSGALG00000029022
N
NPAS1
Gorilla gorilla
ENSGGOG00000013398
N
NPAS3
Gorilla gorilla
ENSGGOG00000022941
N
ENSGMOG00000016149
Gadus morhua
ENSGMOG00000016149
N
ENSLACG00000001145
Latimeria chalumnae
ENSLACG00000001145
N
NPAS3
Loxodonta africana
ENSLAFG00000007169
N
ENSLOCG00000009512
Lepisosteus oculatus
ENSLOCG00000009512
N
ENSLOCG00000014899
Lepisosteus oculatus
ENSLOCG00000014899
N
ENSMEUG00000000606
Macropus eugenii
ENSMEUG00000000606
N
ENSMEUG00000012966
Macropus eugenii
ENSMEUG00000012966
N
ENSMGAG00000016559
Meleagris gallopavo
ENSMGAG00000016559
N
NPAS1
Microcebus murinus
ENSMICG00000006346
N
NPAS1
Macaca mulatta
ENSMMUG00000011330
N
NPAS3
Macaca mulatta
ENSMMUG00000014839
N
NPAS1
Monodelphis domestica
ENSMODG00000009053
N
ENSMODG00000024103
Monodelphis domestica
ENSMODG00000024103
N
ENSMPUG00000001046
Mustela putorius furo
ENSMPUG00000001046
N
ENSMPUG00000005118
Mustela putorius furo
ENSMPUG00000005118
N
Npas1
Mus musculus
ENSMUSG00000001988
N
Npas3
Mus musculus
ENSMUSG00000021010
N
ENSNLEG00000002946
Nomascus leucogenys
ENSNLEG00000002946
N
ENSNLEG00000003239
Nomascus leucogenys
ENSNLEG00000003239
N
ENSOANG00000014043
Ornithorhynchus anatinus
ENSOANG00000014043
N
ENSOARG00000010869
Ovis aries
ENSOARG00000010869
N
NPAS1
Otolemur garnettii
ENSOGAG00000012829
N
NPAS3
Otolemur garnettii
ENSOGAG00000014886
N
NPAS3
Ochotona princeps
ENSOPRG00000008184
N
NPAS1
Ochotona princeps
ENSOPRG00000014860
N
ENSORLG00000006931
Oryzias latipes
ENSORLG00000006931
N
NPAS3
Oryzias latipes
ENSORLG00000018065
N
ENSP00000348460
Macaca fascicularis
ENSP00000348460
N
ENSP00000348460-D1
Bos grunniens
ENSP00000348460-D1
N
ENSP00000405290
Macaca fascicularis
ENSP00000405290
N
ENSPANG00000014704
Papio anubis
ENSPANG00000014704
N
ENSPCAG00000000784
Procavia capensis
ENSPCAG00000000784
N
NPAS3
Procavia capensis
ENSPCAG00000007391
N
ENSPFOG00000008940
Poecilia formosa
ENSPFOG00000008940
N
ENSPMAG00000007632
Petromyzon marinus
ENSPMAG00000007632
N
ENSPPYG00000010165
Pongo abelii
ENSPPYG00000010165
N
ENSPSIG00000017052
Pelodiscus sinensis
ENSPSIG00000017052
N
NPAS3
Pan troglodytes
ENSPTRG00000006249
N
NPAS1
Pan troglodytes
ENSPTRG00000011199
N
Npas1
Rattus norvegicus
ENSRNOG00000015376
N
NPAS3
Sorex araneus
ENSSARG00000003164
N
ENSSARG00000014127
Sorex araneus
ENSSARG00000014127
N
ENSSHAG00000011475
Sarcophilus harrisii
ENSSHAG00000011475
N
NPAS1
Sus scrofa
ENSSSCG00000003108
N
ENSSSCG00000024473
Sus scrofa
ENSSSCG00000024473
N
ENSSTOG00000003396
Ictidomys tridecemlineatus
ENSSTOG00000003396
N
ENSSTOG00000014736
Ictidomys tridecemlineatus
ENSSTOG00000014736
N
NPAS3
Tupaia belangeri
ENSTBEG00000016041
N
ENSTGUG00000011911
Taeniopygia guttata
ENSTGUG00000011911
N
npas1
Takifugu rubripes
ENSTRUG00000012318
N
NPAS3
Tursiops truncatus
ENSTTRG00000003266
N
NPAS1
Tursiops truncatus
ENSTTRG00000011416
N
NPAS3
Vicugna pacos
ENSVPAG00000001108
N
ENSXMAG00000004213
Xiphophorus maculatus
ENSXMAG00000004213
N
Gfo_R012966
Geospiza fortis
Gfo_R012966
N
HelroG63031
Helobdella robusta
HelroG63031
N
Hsal_10736--XP_391937.2_APIME
Harpegnathos saltator
Hsal_10736--XP_391937.2_APIME
N
L798_01241
Zootermopsis nevadensis
L798_01241
N
LCUP010821
Lucilia cuprina
LCUP010821
N
LDEC011477
Leptinotarsa decemlineata
LDEC011477
N
MDOA009035
Musca domestica
MDOA009035
N
NEMVEDRAFT_v1g96877
Nematostella vectensis
NEMVEDRAFT_v1g96877
N
NV13641
Nasonia vitripennis
NV13641
N
PHUM613040
Pediculus humanus
PHUM613040
N
Pvit_04747
Pogona vitticeps
Pvit_04747
N
Sakowv30006415m.g
Saccoglossus kowalevskii
Sakowv30006415m.g
N
SPU_014249
Strongylocentrotus purpuratus
SPU_014249
N
Tal_R006980
Tyto alba
Tal_R006980
N
TC001448
Tribolium castaneum
TC001448
N
npas3
Xenopus tropicalis
XB-GENE-999791
N