CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ENSGMOG00000018104
(
Gadus morhua
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00010 (HLH)
IPR001092
ENSGMOG00000018104
T034766_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Tcf4
M01750_2.00
Mus musculus
VCAGVTGBN
NVCABCTGB
PBM
Weirauch et al.(2014)
pTH5101
0.914
1.000
TCF4
M02807_2.00
Homo sapiens
HRCACCTGBN
NVCAGGTGYD
SELEX
Jolma et al.(2013)
TCF4_1
0.914
1.000
TCF4
M02808_2.00
Homo sapiens
NVCACCTBBN
NVVAGGTGBN
SELEX
Jolma et al.(2013)
TCF4_2
0.914
1.000
TCF4
M02728_2.00
Homo sapiens
RCACCTG
CAGGTGY
SELEX
Jolma et al.(2010)
TCF4_dimer
0.914
1.000
TCF4
M04214_2.00
Homo sapiens
VCACCTGB
VCAGGTGB
SELEX
Yin et al.(2017)
TCF4_eDBD_HT-SELEX
0.914
1.000
Tcf4
M08775_2.00
Mus musculus
HRCACCTGB
VCAGGTGYD
Misc
Kulakovskiy et al.(2013)
ITF2_MOUSE.H11MO.0.B
0.914
1.000
TCF4
M09461_2.00
Homo sapiens
ASWTCAAAGRVN
NBYCTTTGAWST
Misc
Heinz et al.(2010)
Hct116-Tcf4_SRA012054
0.914
1.000
TCF4
M04215_2.00
Homo sapiens
VCACCTGN
NCAGGTGB
SELEX
Yin et al.(2017)
TCF4_eDBD_Methyl-HT-SELEX
0.914
1.000
Tcf12
M01740_2.00
Mus musculus
NVCAYCTGB
VCAGRTGBN
PBM
Weirauch et al.(2014)
pTH5071
0.912
0.962
TCF12
M04137_2.00
Homo sapiens
VCACSTGB
VCASGTGB
SELEX
Yin et al.(2017)
TCF12_eDBD_HT-SELEX
0.912
0.962
Tcf12
M08062_2.00
Mus musculus
RRCAGCTGNNN
NNNCAGCTGYY
ChIP-seq
Mathelier et al.(2014)
MA0521.1
0.912
0.962
TCF12
M07805_2.00
Homo sapiens
NVDSCAGSTGB
VCASCTGSHBN
ChIP-seq
Gerstein et al.(2012)
GM12878_TCF12_HudsonAlpha
0.912
0.962
TCF12
M07806_2.00
Homo sapiens
VCASCTGB
VCAGSTGB
ChIP-seq
Gerstein et al.(2012)
H1-hESC_TCF12_HudsonAlpha
0.912
0.962
TCF12
M08731_2.00
Homo sapiens
CMCASCTGSH
DSCAGSTGKG
Misc
Kulakovskiy et al.(2013)
HTF4_HUMAN.H11MO.0.A
0.912
0.962
Tcf12
M08762_2.00
Mus musculus
VMCASCTGSH
DSCAGSTGKB
Misc
Kulakovskiy et al.(2013)
HTF4_MOUSE.H11MO.0.A
0.912
0.962
TCF12
M09458_2.00
Homo sapiens
NNVCAGCTGB
VCAGCTGBNN
Misc
Heinz et al.(2010)
GM12878-Tcf12_GSE32465
0.912
0.962
TCF12
M09858_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HEB_Q6
0.912
0.962
TCF12
M09859_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HTF4_Q2
0.912
0.962
TCF12
M09860_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF12_01
0.912
0.962
TCF12
M09861_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF12_03
0.912
0.962
TCF12
M09862_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF12_05
0.912
0.962
TCF12
M04138_2.00
Homo sapiens
NCAYCTGN
NCAGRTGN
SELEX
Yin et al.(2017)
TCF12_eDBD_Methyl-HT-SELEX
0.912
0.962
Tcf3
M00753_2.00
Mus musculus
VCACCTGBN
NVCAGGTGB
PBM
Weirauch et al.(2013)
pTH3866
0.912
0.885
Tcf3
M01723_2.00
Mus musculus
NNVCACSTGB
VCASGTGBNN
PBM
Weirauch et al.(2014)
pTH4580
0.912
0.885
Tcf3
M00118_2.00
Mus musculus
VCAYCTGB
VCAGRTGB
PBM
Badis et al.(2009)
Tcfe2a_3865
0.912
0.885
Tcf3
M09465_2.00
Mus musculus
ABWTCAAAGS
SCTTTGAWVT
Misc
Heinz et al.(2010)
mES-Tcf3_GSE11724
0.884
0.923
Tcf3
M09466_2.00
Mus musculus
VCAGCTGBNN
NNVCAGCTGB
Misc
Heinz et al.(2010)
proBcell-E2A_GSE21978
0.884
0.923
Tcf3
M09886_2.00
Mus musculus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E47_05
0.884
0.923
TCF3
M02775_2.00
Homo sapiens
NVCACCTGBN
NVCAGGTGBN
SELEX
Jolma et al.(2013)
TCF3_1
0.884
0.885
TCF3
M08710_2.00
Homo sapiens
VVCASCTGCHN
NDGCAGSTGBB
Misc
Kulakovskiy et al.(2013)
TFE2_HUMAN.H11MO.0.A
0.884
0.885
TCF3
M09791_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E12_Q6
0.884
0.885
TCF3
M09792_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2A_Q6_01
0.884
0.885
TCF3
M09793_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2A_Q6_02
0.884
0.885
TCF3
M09794_2.00
Homo sapiens
VVVVMCACCTGCNBB
VVNGCAGGTGKBBBB
Transfac
Matys et al.(2006)
V$E47_01
0.884
0.885
TCF3
M09795_2.00
Homo sapiens
NNKWRCACCTGYDNNN
NNNHRCAGGTGYWMNN
Transfac
Matys et al.(2006)
V$E47_02
0.884
0.885
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSGMOP00000019485
bHLH
415
468
RRMANNARERLRVRDINEAFKELGRMVQLHLKSDKPQTKLLILHQAVAVILSLE
Links
Other
bHLH
family TFs
Other
Gadus morhua
TFs
212 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
A1O1_03049
Capronia coronata
A1O1_03049
N
A1O3_03070
Capronia epimyces
A1O3_03070
N
A1O5_03174
Cladophialophora psammophila
A1O5_03174
N
A1O7_04260
Cladophialophora yegresii
A1O7_04260
N
A1O9_10110
Exophiala aquamarina
A1O9_10110
N
AB04891.1
Alternaria brassicicola
AB04891.1
N
ACRE_080490
Acremonium chrysogenum
ACRE_080490
N
ARB_03730
Arthroderma benhamiae
ARB_03730
N
AUEXF2481DRAFT_61122
Aureobasidium subglaciale
AUEXF2481DRAFT_61122
N
BAUCODRAFT_66250
Baudoinia compniacensis
BAUCODRAFT_66250
N
BBA_03882
Beauveria bassiana
BBA_03882
N
Bcin03g06360
Botrytis cinerea
Bcin03g06360
N
BDDG_02399
Blastomyces dermatitidis
BDDG_02399
N
BGHDH14_bgh03972
Blumeria graminis
BGHDH14_bgh03972
N
ACLA_049540
Aspergillus clavatus
CADACLAG00004442
N
CADAFLAG00002009
Aspergillus flavus
CADAFLAG00002009
N
AFUA_4G10340
Aspergillus fumigatus
CADAFUAG00008545
N
CADANGAG00004378
Aspergillus niger
CADANGAG00004378
N
ANIA_02001
Aspergillus nidulans
CADANIAG00008668
N
CADAORAG00001730
Aspergillus oryzae
CADAORAG00001730
N
ATEG_00695
Aspergillus terreus
CADATEAG00005773
N
NFIA_105730
Neosartorya fischeri
CADNFIAG00010088
N
CCM_05064
Cordyceps militaris
CCM_05064
N
CFIO01_12205
Colletotrichum fioriniae
CFIO01_12205
N
CGGC5_5229
Colletotrichum gloeosporioides
CGGC5_5229
N
CH063_10808
Colletotrichum higginsianum
CH063_10808
N
CHGG_09110
Chaetomium globosum
CHGG_09110
N
CIMG_00566
Coccidioides immitis
CIMG_00566
N
CMQ_6208
Grosmannia clavigera
CMQ_6208
N
Cob_09908
Colletotrichum orbiculare
Cob_09908
N
COCC4DRAFT_38721
Bipolaris maydis
COCC4DRAFT_38721
N
COCCADRAFT_28023
Bipolaris zeicola
COCCADRAFT_28023
N
COCMIDRAFT_105248
Bipolaris oryzae
COCMIDRAFT_105248
N
COCSADRAFT_167385
Bipolaris sorokiniana
COCSADRAFT_167385
N
COCVIDRAFT_96737
Bipolaris victoriae
COCVIDRAFT_96737
N
CPC735_056750
Coccidioides posadasii
CPC735_056750
N
CPUR_01959
Claviceps purpurea
CPUR_01959
N
CSUB01_03793
Colletotrichum sublineola
CSUB01_03793
N
CTHT_0042290
Chaetomium thermophilum
CTHT_0042290
N
DOTSEDRAFT_70793
Dothistroma septosporum
DOTSEDRAFT_70793
N
EPUS_03764
Endocarpon pusillum
EPUS_03764
N
estExt_fgenesh1_pg.C_110150
Cochliobolus heterostrophus C5
estExt_fgenesh1_pg.C_110150
N
estExt_fgenesh1_pg.C_150025
Cryphonectria parasitica
estExt_fgenesh1_pg.C_150025
N
estExt_fgenesh1_pm.C_sca_2_chr3_3_00241
Nectria haematococca
estExt_fgenesh1_pm.C_sca_2_chr3_3_00241
N
estExt_Genewise1.C_130473
Neurospora discreta
estExt_Genewise1.C_130473
N
estExt_Genewise1Plus.C_260073
Mycosphaerella fijiensis
estExt_Genewise1Plus.C_260073
N
EURHEDRAFT_32599
Aspergillus ruber
EURHEDRAFT_32599
N
EV44_g1793
Erysiphe necator
EV44_g1793
N
e_gw1.00216.1.1
Aspergillus carbonarius
e_gw1.00216.1.1
N
F503_05779
Ophiostoma piceae uamh
F503_05779
N
FFUJ_06286
Fusarium fujikuroi
FFUJ_06286
N
fgenesh1_pm.C_chr_3000224
Mycosphaerella graminicola
fgenesh1_pm.C_chr_3000224
N
FGRRES_08769
Fusarium graminearum
FGRRES_08769
N
FOXG_03026
Fusarium oxysporum
FOXG_03026
N
FPSE_10044
Fusarium pseudograminearum
FPSE_10044
N
FVEG_01884
Fusarium verticillioides
FVEG_01884
N
G647_04434
Cladophialophora carrionii
G647_04434
N
GGTG_00059
Gaeumannomyces graminis
GGTG_00059
N
GLRG_10961
Colletotrichum graminicola
GLRG_10961
N
GMDG_03392
Pseudogymnoascus destructans
GMDG_03392
N
H101_04532
Trichophyton interdigitale
H101_04532
N
H102_01486
Trichophyton rubrum
H102_01486
N
H105_01502
Trichophyton soudanense
H105_01502
N
HCBG_04109
Histoplasma capsulatum
HCBG_04109
N
HMPREF1120_06697
Exophiala dermatitidis
HMPREF1120_06697
N
HMPREF1541_00239
Cyphellophora europaea
HMPREF1541_00239
N
HMPREF1624_02133
Sporothrix schenckii
HMPREF1624_02133
N
LEMA_P014680.1
Leptosphaeria maculans
LEMA_P014680.1
N
M437DRAFT_77926
Aureobasidium melanogenum
M437DRAFT_77926
N
M438DRAFT_266596
Aureobasidium pullulans
M438DRAFT_266596
N
M7I_2378
Glarea lozoyensis
M7I_2378
N
MAC_02643
Metarhizium acridum
MAC_02643
N
MAJ_00175
Metarhizium majus
MAJ_00175
N
MAM_00809
Metarhizium album
MAM_00809
N
MANI_018746
Metarhizium anisopliae
MANI_018746
N
MBM_01046
Marssonina brunnea
MBM_01046
N
MBR_02463
Metarhizium brunneum
MBR_02463
N
MCYG_06465
Microsporum canis
MCYG_06465
N
MCYG_06465
Arthroderma otae
MCYG_06465
N
MGG_01285
Magnaporthe oryzae
MGG_01285
N
MGU_00549
Metarhizium guizhouense
MGU_00549
N
MGYG_06920
Microsporum gypseum
MGYG_06920
N
MPH_09537
Macrophomina phaseolina
MPH_09537
N
MYCFIDRAFT_133783
Pseudocercospora fijiensis
MYCFIDRAFT_133783
N
Mycgr3G85154
Zymoseptoria tritici
Mycgr3G85154
N
MYCTH_2306599
Myceliophthora thermophila
MYCTH_2306599
N
NCU05996
Neurospora crassa
NCU05996
N
NechaG103742
Fusarium solani
NechaG103742
N
NEUTE1DRAFT_88208
Neurospora tetrasperma
NEUTE1DRAFT_88208
N
OCS_03112
Ophiocordyceps sinensis
OCS_03112
N
OIDMADRAFT_131809
Oidiodendron maius
OIDMADRAFT_131809
N
PAAG_07082
Paracoccidioides sp lutzii
PAAG_07082
N
PABG_03080
Paracoccidioides brasiliensis
PABG_03080
N
Pc22g12400
Penicillium chrysogenum
Pc22g12400
N
PCH_Pc22g12400
Penicillium rubens
PCH_Pc22g12400
N
PDE_03960
Penicillium oxalicum
PDE_03960
N
PEX1_078770
Penicillium expansum
PEX1_078770
N
PITC_045190
Penicillium italicum
PITC_045190
N
PMAA_040330
Talaromyces marneffei
PMAA_040330
N
PMAA_040330
Penicillium marneffei
PMAA_040330
N
PODANS_4_7770
Podospora anserina
PODANS_4_7770
N
PTRG_01493
Pyrenophora triticirepentis
PTRG_01493
N
PTT_05305
Pyrenophora teres
PTT_05305
N
PV04_05214
Capronia semiimmersa
PV04_05214
N
PV05_01504
Exophiala xenobiotica
PV05_01504
N
PV06_04561
Exophiala oligosperma
PV06_04561
N
PV07_07860
Cladophialophora immunda
PV07_07860
N
PV08_10831
Exophiala spinifera
PV08_10831
N
PV09_07811
Verruconis gallopava
PV09_07811
N
PV10_00117
Exophiala mesophila
PV10_00117
N
PV11_04569
Exophiala sideris
PV11_04569
N
PVAR5_7768
Byssochlamys spectabilis
PVAR5_7768
N
S40285_04540
Stachybotrys chlorohalonata
S40285_04540
N
S40288_03053
Stachybotrys chartarum
S40288_03053
N
SAPIO_CDS8154
Scedosporium apiospermum
SAPIO_CDS8154
N
SBOR_0226
Sclerotinia borealis
SBOR_0226
N
SEPMUDRAFT_148777
Sphaerulina musiva
SEPMUDRAFT_148777
N
SETTUDRAFT_85211
Setosphaeria turcica
SETTUDRAFT_85211
N
SMAC_07926
Sordaria macrospora
SMAC_07926
N
SNOG_06665
Stagonospora nodorum
SNOG_06665
N
SNOG_06665
Phaeosphaeria nodorum
SNOG_06665
N
SPBR_02319
Sporothrix brasiliensis
SPBR_02319
N
SS1G_00170
Sclerotinia sclerotiorum
SS1G_00170
N
TEQG_03837
Trichophyton equinum
TEQG_03837
N
TESG_05291
Trichophyton tonsurans
TESG_05291
N
THITE_2109964
Thielavia terrestris
THITE_2109964
N
TRIATDRAFT_150965
Trichoderma atroviride
TRIATDRAFT_150965
N
TRIREDRAFT_22755
Trichoderma reesei
TRIREDRAFT_22755
N
TRIVIDRAFT_179371
Trichoderma virens
TRIVIDRAFT_179371
N
TRV_06251
Trichophyton verrucosum
TRV_06251
N
TSTA_078370
Talaromyces stipitatus
TSTA_078370
N
U727_00434374301
Penicillium solitum
U727_00434374301
N
UCREL1_2824
Eutypa lata
UCREL1_2824
N
UCRNP2_2025
Neofusicoccum parvum
UCRNP2_2025
N
UCRPA7_4672
Togninia minima
UCRPA7_4672
N
UREG_00588
Uncinocarpus reesii
UREG_00588
N
UV8b_7231
Ustilaginoidea virens
UV8b_7231
N
V499_03429
Pseudogymnoascus pannorum
V499_03429
N
VDAG_05596
Verticillium dahliae
VDAG_05596
N
VHEMI06901
Torrubiella hemipterigena
VHEMI06901
N
W97_06222
Coniosporium apollinis
W97_06222
N
X797_000500
Metarhizium robertsii
X797_000500
N
Z517_11864
Fonsecaea pedrosoi
Z517_11864
N
Z518_10014
Rhinocladiella mackenziei
Z518_10014
N
Z519_10023
Cladophialophora bantiana
Z519_10023
N