CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ENSGMOG00000018104
(
Gadus morhua
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00010 (HLH)
IPR001092
ENSGMOG00000018104
T034766_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Tcf4
M01750_2.00
Mus musculus
VCAGVTGBN
NVCABCTGB
PBM
Weirauch et al.(2014)
pTH5101
0.914
1.000
TCF4
M02807_2.00
Homo sapiens
HRCACCTGBN
NVCAGGTGYD
SELEX
Jolma et al.(2013)
TCF4_1
0.914
1.000
TCF4
M02808_2.00
Homo sapiens
NVCACCTBBN
NVVAGGTGBN
SELEX
Jolma et al.(2013)
TCF4_2
0.914
1.000
TCF4
M02728_2.00
Homo sapiens
RCACCTG
CAGGTGY
SELEX
Jolma et al.(2010)
TCF4_dimer
0.914
1.000
TCF4
M04214_2.00
Homo sapiens
VCACCTGB
VCAGGTGB
SELEX
Yin et al.(2017)
TCF4_eDBD_HT-SELEX
0.914
1.000
Tcf4
M08775_2.00
Mus musculus
HRCACCTGB
VCAGGTGYD
Misc
Kulakovskiy et al.(2013)
ITF2_MOUSE.H11MO.0.B
0.914
1.000
TCF4
M09461_2.00
Homo sapiens
ASWTCAAAGRVN
NBYCTTTGAWST
Misc
Heinz et al.(2010)
Hct116-Tcf4_SRA012054
0.914
1.000
TCF4
M04215_2.00
Homo sapiens
VCACCTGN
NCAGGTGB
SELEX
Yin et al.(2017)
TCF4_eDBD_Methyl-HT-SELEX
0.914
1.000
Tcf12
M01740_2.00
Mus musculus
NVCAYCTGB
VCAGRTGBN
PBM
Weirauch et al.(2014)
pTH5071
0.912
0.962
TCF12
M04137_2.00
Homo sapiens
VCACSTGB
VCASGTGB
SELEX
Yin et al.(2017)
TCF12_eDBD_HT-SELEX
0.912
0.962
Tcf12
M08062_2.00
Mus musculus
RRCAGCTGNNN
NNNCAGCTGYY
ChIP-seq
Mathelier et al.(2014)
MA0521.1
0.912
0.962
TCF12
M07805_2.00
Homo sapiens
NVDSCAGSTGB
VCASCTGSHBN
ChIP-seq
Gerstein et al.(2012)
GM12878_TCF12_HudsonAlpha
0.912
0.962
TCF12
M07806_2.00
Homo sapiens
VCASCTGB
VCAGSTGB
ChIP-seq
Gerstein et al.(2012)
H1-hESC_TCF12_HudsonAlpha
0.912
0.962
TCF12
M08731_2.00
Homo sapiens
CMCASCTGSH
DSCAGSTGKG
Misc
Kulakovskiy et al.(2013)
HTF4_HUMAN.H11MO.0.A
0.912
0.962
Tcf12
M08762_2.00
Mus musculus
VMCASCTGSH
DSCAGSTGKB
Misc
Kulakovskiy et al.(2013)
HTF4_MOUSE.H11MO.0.A
0.912
0.962
TCF12
M09458_2.00
Homo sapiens
NNVCAGCTGB
VCAGCTGBNN
Misc
Heinz et al.(2010)
GM12878-Tcf12_GSE32465
0.912
0.962
TCF12
M09858_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HEB_Q6
0.912
0.962
TCF12
M09859_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HTF4_Q2
0.912
0.962
TCF12
M09860_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF12_01
0.912
0.962
TCF12
M09861_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF12_03
0.912
0.962
TCF12
M09862_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF12_05
0.912
0.962
TCF12
M04138_2.00
Homo sapiens
NCAYCTGN
NCAGRTGN
SELEX
Yin et al.(2017)
TCF12_eDBD_Methyl-HT-SELEX
0.912
0.962
Tcf3
M00753_2.00
Mus musculus
VCACCTGBN
NVCAGGTGB
PBM
Weirauch et al.(2013)
pTH3866
0.912
0.885
Tcf3
M01723_2.00
Mus musculus
NNVCACSTGB
VCASGTGBNN
PBM
Weirauch et al.(2014)
pTH4580
0.912
0.885
Tcf3
M00118_2.00
Mus musculus
VCAYCTGB
VCAGRTGB
PBM
Badis et al.(2009)
Tcfe2a_3865
0.912
0.885
Tcf3
M09465_2.00
Mus musculus
ABWTCAAAGS
SCTTTGAWVT
Misc
Heinz et al.(2010)
mES-Tcf3_GSE11724
0.884
0.923
Tcf3
M09466_2.00
Mus musculus
VCAGCTGBNN
NNVCAGCTGB
Misc
Heinz et al.(2010)
proBcell-E2A_GSE21978
0.884
0.923
Tcf3
M09886_2.00
Mus musculus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E47_05
0.884
0.923
TCF3
M02775_2.00
Homo sapiens
NVCACCTGBN
NVCAGGTGBN
SELEX
Jolma et al.(2013)
TCF3_1
0.884
0.885
TCF3
M08710_2.00
Homo sapiens
VVCASCTGCHN
NDGCAGSTGBB
Misc
Kulakovskiy et al.(2013)
TFE2_HUMAN.H11MO.0.A
0.884
0.885
TCF3
M09791_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E12_Q6
0.884
0.885
TCF3
M09792_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2A_Q6_01
0.884
0.885
TCF3
M09793_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2A_Q6_02
0.884
0.885
TCF3
M09794_2.00
Homo sapiens
VVVVMCACCTGCNBB
VVNGCAGGTGKBBBB
Transfac
Matys et al.(2006)
V$E47_01
0.884
0.885
TCF3
M09795_2.00
Homo sapiens
NNKWRCACCTGYDNNN
NNNHRCAGGTGYWMNN
Transfac
Matys et al.(2006)
V$E47_02
0.884
0.885
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSGMOP00000019485
bHLH
415
468
RRMANNARERLRVRDINEAFKELGRMVQLHLKSDKPQTKLLILHQAVAVILSLE
Links
Other
bHLH
family TFs
Other
Gadus morhua
TFs
212 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
F775_11947
Aegilops tauschii
F775_11947
I
F775_22811
Aegilops tauschii
F775_22811
I
F775_23099
Aegilops tauschii
F775_23099
I
AMTR_s00021p00189010
Amborella trichopoda
AMTR_s00021p00189010
I
AMTR_s00119p00100440
Amborella trichopoda
AMTR_s00119p00100440
I
Aquca_014_00949
Aquilegia coerulea
Aquca_014_00949
I
Aquca_036_00007
Aquilegia coerulea
Aquca_036_00007
I
WOX9
Arabidopsis lyrata
Al_scaffold_0004_1872
I
WOX12
Arabidopsis lyrata
Al_scaffold_0006_1694
I
WOX11
Arabidopsis lyrata
fgenesh2_kg.3__312__AT3G03660.1
I
WOX8
Arabidopsis lyrata
scaffold_800245.1
I
WOX9
Arabidopsis thaliana
AT2G33880
I
WOX11
Arabidopsis thaliana
AT3G03660
D
WOX12
Arabidopsis thaliana
AT5G17810
I
WOX8
Arabidopsis thaliana
AT5G45980
I
Bostr.19046s0084
Boechera stricta
Bostr.19046s0084
I
Bostr.23794s0703
Boechera stricta
Bostr.23794s0703
I
Bostr.8819s0128
Boechera stricta
Bostr.8819s0128
I
BRADI1G17420
Brachypodium distachyon
BRADI1G17420
I
BRADI3G18800
Brachypodium distachyon
BRADI3G18800
I
Bo11772s010
Brassica oleracea
Bo11772s010
I
Bo1g153650
Brassica oleracea
Bo1g153650
I
Bo2g013980
Brassica oleracea
Bo2g013980
I
Bo2g062660
Brassica oleracea
Bo2g062660
I
Bo2g127670
Brassica oleracea
Bo2g127670
I
Bo3g027500
Brassica oleracea
Bo3g027500
I
Bo4g041330
Brassica oleracea
Bo4g041330
I
Bo5g148780
Brassica oleracea
Bo5g148780
I
Bo8g106350
Brassica oleracea
Bo8g106350
I
Bo9g070070
Brassica oleracea
Bo9g070070
I
Bo9g159820
Brassica oleracea
Bo9g159820
I
Bra002108
Brassica rapa
Bra002108
I
Bra005464
Brassica rapa
Bra005464
I
Bra017448
Brassica rapa
Bra017448
I
Bra022008
Brassica rapa
Bra022008
I
Bra022960
Brassica rapa
Bra022960
I
Bra023638
Brassica rapa
Bra023638
I
Bra026791
Brassica rapa
Bra026791
I
Bra031980
Brassica rapa
Bra031980
I
Bra036446
Brassica rapa
Bra036446
I
Cagra.1195s0012
Capsella grandiflora
Cagra.1195s0012
I
Cagra.2097s0014
Capsella grandiflora
Cagra.2097s0014
I
Cagra.2098s0022
Capsella grandiflora
Cagra.2098s0022
I
Cagra.6254s0027
Capsella grandiflora
Cagra.6254s0027
I
Carubv10003719m.g
Capsella rubella
Carubv10003719m.g
I
Carubv10016081m.g
Capsella rubella
Carubv10016081m.g
I
Carubv10025224m.g
Capsella rubella
Carubv10025224m.g
I
Carubv10027735m.g
Capsella rubella
Carubv10027735m.g
I
evm.TU.supercontig_7.12
Carica papaya
evm.TU.supercontig_7.12
I
evm.TU.supercontig_73.3
Carica papaya
evm.TU.supercontig_73.3
I
Ca_00357
Cicer arietinum
Ca_00357
I
Ca_06365
Cicer arietinum
Ca_06365
I
Ca_08180
Cicer arietinum
Ca_08180
I
Ca_19701
Cicer arietinum
Ca_19701
I
Cla009819
Citrullus lanatus
Cla009819
I
Ciclev10015562m.g
Citrus clementina
Ciclev10015562m.g
I
Ciclev10021682m.g
Citrus clementina
Ciclev10021682m.g
I
orange1.1g036145m.g
Citrus sinensis
orange1.1g036145m.g
I
orange1.1g047211m.g
Citrus sinensis
orange1.1g047211m.g
I
Cucsa.046640
Cucumis sativus
Cucsa.046640
I
Cucsa.336980
Cucumis sativus
Cucsa.336980
I
Eucgr.A02149
Eucalyptus grandis
Eucgr.A02149
I
Eucgr.D00577
Eucalyptus grandis
Eucgr.D00577
I
Thhalv10001099m.g
Eutrema salsugineum
Thhalv10001099m.g
I
Thhalv10009654m.g
Eutrema salsugineum
Thhalv10009654m.g
I
Thhalv10015651m.g
Eutrema salsugineum
Thhalv10015651m.g
I
Thhalv10016784m.g
Eutrema salsugineum
Thhalv10016784m.g
I
Thhalv10022222m.g
Eutrema salsugineum
Thhalv10022222m.g
I
gene28935-v1.0-hybrid
Fragaria vesca
gene28935-v1.0-hybrid
I
gene29786-v1.0-hybrid
Fragaria vesca
gene29786-v1.0-hybrid
I
gene30337-v1.0-hybrid
Fragaria vesca
gene30337-v1.0-hybrid
I
GLYMA03G01000
Glycine max
GLYMA03G01000
I
GLYMA07G32430
Glycine max
GLYMA07G32430
I
GLYMA10G08030
Glycine max
GLYMA10G08030
I
GLYMA13G21860
Glycine max
GLYMA13G21860
I
GLYMA13G24150
Glycine max
GLYMA13G24150
I
GLYMA19G29660
Glycine max
GLYMA19G29660
I
Gorai.007G346300
Gossypium raimondii
Gorai.007G346300
I
Gorai.009G165700
Gossypium raimondii
Gorai.009G165700
I
Gorai.011G031300
Gossypium raimondii
Gorai.011G031300
I
Gorai.013G196400
Gossypium raimondii
Gorai.013G196400
I
MLOC_65745
Hordeum vulgare
MLOC_65745
I
MLOC_6669
Hordeum vulgare
MLOC_6669
I
MLOC_7925
Hordeum vulgare
MLOC_7925
I
LPERR01G22080
Leersia perrieri
LPERR01G22080
I
LPERR03G13850
Leersia perrieri
LPERR03G13850
I
LPERR07G23470
Leersia perrieri
LPERR07G23470
I
LPERR07G23520
Leersia perrieri
LPERR07G23520
I
Lus10005282.g
Linum usitatissimum
Lus10005282.g
I
CM1489.70.nc
Lotus japonicus
CM1489.70.nc
I
LjSGA_037808.1
Lotus japonicus
LjSGA_037808.1
I
LjT26C04.20.nd
Lotus japonicus
LjT26C04.20.nd
I
MDP0000136426
Malus domestica
MDP0000136426
I
MDP0000232004
Malus domestica
MDP0000232004
I
MDP0000524885
Malus domestica
MDP0000524885
I
MDP0000729328
Malus domestica
MDP0000729328
I
cassava15562.m1
Manihot esculenta
cassava15562.m1
I
cassava40675.m1
Manihot esculenta
cassava40675.m1
I
cassava4506.m1
Manihot esculenta
cassava4506.m1
I
cassava4770.m1
Manihot esculenta
cassava4770.m1
I
MTR_2g015000
Medicago truncatula
MTR_2g015000
I
MTR_4g088070
Medicago truncatula
MTR_4g088070
I
MTR_4g088080
Medicago truncatula
MTR_4g088080
I
MTR_6g027390
Medicago truncatula
MTR_6g027390
I
MTR_7g025010
Medicago truncatula
MTR_7g025010
I
MTR_7g086940
Medicago truncatula
MTR_7g086940
I
mgf001579m
Mimulus guttatus
mgf001579m
I
mgf016673m
Mimulus guttatus
mgf016673m
I
mgf017527m
Mimulus guttatus
mgf017527m
I
GSMUA_Achr10G05090_001
Musa acuminata
GSMUA_Achr10G05090_001
I
GSMUA_Achr10G12820_001
Musa acuminata
GSMUA_Achr10G12820_001
I
GSMUA_Achr3G09460_001
Musa acuminata
GSMUA_Achr3G09460_001
I
GSMUA_Achr5G27730_001
Musa acuminata
GSMUA_Achr5G27730_001
I
GSMUA_Achr6G15910_001
Musa acuminata
GSMUA_Achr6G15910_001
I
GSMUA_Achr8G01590_001
Musa acuminata
GSMUA_Achr8G01590_001
I
GSMUA_Achr8G27170_001
Musa acuminata
GSMUA_Achr8G27170_001
I
GSMUA_Achr9G05010_001
Musa acuminata
GSMUA_Achr9G05010_001
I
GSMUA_Achr9G06660_001
Musa acuminata
GSMUA_Achr9G06660_001
I
OBART01G25820
Oryza barthii
OBART01G25820
I
OBART03G15820
Oryza barthii
OBART03G15820
I
OBART05G25900
Oryza barthii
OBART05G25900
I
OBART07G26670
Oryza barthii
OBART07G26670
I
OB01G35000
Oryza brachyantha
OB01G35000
I
OB08G17020
Oryza brachyantha
OB08G17020
I
OB10G14840
Oryza brachyantha
OB10G14840
I
ORGLA01G0211300
Oryza glaberrima
ORGLA01G0211300
I
ORGLA03G0151500
Oryza glaberrima
ORGLA03G0151500
I
ORGLA05G0223800
Oryza glaberrima
ORGLA05G0223800
I
ORGLA07G0211000
Oryza glaberrima
ORGLA07G0211000
I
ORGLA07G0240100
Oryza glaberrima
ORGLA07G0240100
N
ORGLA08G0063600
Oryza glaberrima
ORGLA08G0063600
I
OGLUM01G29670
Oryza glumaepatula
OGLUM01G29670
I
OGLUM03G15990
Oryza glumaepatula
OGLUM03G15990
I
OGLUM05G27500
Oryza glumaepatula
OGLUM05G27500
I
OGLUM07G26700
Oryza glumaepatula
OGLUM07G26700
I
OGLUM08G08120
Oryza glumaepatula
OGLUM08G08120
I
BGIOSGA001059
Oryza indica
BGIOSGA001059
I
WOX6
Oryza indica
BGIOSGA010824
I
BGIOSGA020366
Oryza indica
BGIOSGA020366
I
BGIOSGA026413
Oryza indica
BGIOSGA026413
I
WOX10
Oryza indica
BGIOSGA027391
I
OMERI01G23480
Oryza meridionalis
OMERI01G23480
I
OMERI07G13960
Oryza meridionalis
OMERI07G13960
N
OMERI07G23310
Oryza meridionalis
OMERI07G23310
I
ONIVA01G29060
Oryza nivara
ONIVA01G29060
I
ONIVA05G27800
Oryza nivara
ONIVA05G27800
I
ONIVA07G26430
Oryza nivara
ONIVA07G26430
I
ONIVA08G08030
Oryza nivara
ONIVA08G08030
I
OPUNC03G15320
Oryza punctata
OPUNC03G15320
I
OPUNC05G23480
Oryza punctata
OPUNC05G23480
I
OPUNC07G25100
Oryza punctata
OPUNC07G25100
I
ORUFI03G16410
Oryza rufipogon
ORUFI03G16410
I
ORUFI05G27780
Oryza rufipogon
ORUFI05G27780
I
ORUFI07G27650
Oryza rufipogon
ORUFI07G27650
I
ORUFI08G08400
Oryza rufipogon
ORUFI08G08400
I
OS01G0667450
Oryza sativa
OS01G0667450
I
OS03G0325600
Oryza sativa
OS03G0325600
I
OS05G0564500
Oryza sativa
OS05G0564500
I
OS07G0533201
Oryza sativa
OS07G0533201
N
WOX11
Oryza sativa
OS07G0684900
I
WOX10
Oryza sativa
OS08G0242400
I
Pavir.Ba00249
Panicum virgatum
Pavir.Ba00249
I
Pavir.Ca00938
Panicum virgatum
Pavir.Ca00938
I
Pavir.Eb02702
Panicum virgatum
Pavir.Eb02702
I
Pavir.Fb01029
Panicum virgatum
Pavir.Fb01029
I
Pavir.Ia03448
Panicum virgatum
Pavir.Ia03448
I
Pavir.Ib01521
Panicum virgatum
Pavir.Ib01521
I
Pavir.J23422
Panicum virgatum
Pavir.J23422
I
Pavir.J33010
Panicum virgatum
Pavir.J33010
I
PDK_20s13009443g001
Phoenix dactylifera
PDK_20s13009443g001
I
PDK_20s1465351g003
Phoenix dactylifera
PDK_20s1465351g003
I
POPTR_0004s05090
Populus trichocarpa
POPTR_0004s05090
I
POPTR_0011s05980
Populus trichocarpa
POPTR_0011s05980
I
POPTR_0013s06310
Populus trichocarpa
POPTR_0013s06310
I
POPTR_0019s05730
Populus trichocarpa
POPTR_0019s05730
I
Pm010370
Prunus mume
Pm010370
I
Pm025458
Prunus mume
Pm025458
I
PRUPE_ppa019841mg
Prunus persica
PRUPE_ppa019841mg
I
PRUPE_ppa026303mg
Prunus persica
PRUPE_ppa026303mg
I
29900.m001555
Ricinus communis
29900.m001555
I
30072.m000927
Ricinus communis
30072.m000927
I
SapurV1A.0012s0880
Salix purpurea
SapurV1A.0012s0880
I
SapurV1A.0270s0270
Salix purpurea
SapurV1A.0270s0270
I
SapurV1A.0631s0110
Salix purpurea
SapurV1A.0631s0110
I
SapurV1A.1660s0010
Salix purpurea
SapurV1A.1660s0010
I
SELMODRAFT_115439
Selaginella moellendorffii
SELMODRAFT_115439
I
SELMODRAFT_123325
Selaginella moellendorffii
SELMODRAFT_123325
I
Si004249m.g
Setaria italica
Si004249m.g
I
Si015065m.g
Setaria italica
Si015065m.g
I
Si025013m.g
Setaria italica
Si025013m.g
I
Si030836m.g
Setaria italica
Si030836m.g
I
Si039112m.g
Setaria italica
Si039112m.g
I
Solyc02g077390.1
Solanum lycopersicum
Solyc02g077390.1
I
Solyc06g072890.1
Solanum lycopersicum
Solyc06g072890.1
I
PGSC0003DMG400010725
Solanum tuberosum
PGSC0003DMG400010725
I
PGSC0003DMG400027030
Solanum tuberosum
PGSC0003DMG400027030
I
Sb01g036670
Sorghum bicolor
Sb01g036670
I
Sb02g043300
Sorghum bicolor
Sb02g043300
I
Sb07g007600
Sorghum bicolor
Sb07g007600
I
Sb09g028562
Sorghum bicolor
Sb09g028562
I
TCM_025805
Theobroma cacao
TCM_025805
I
TCM_029776
Theobroma cacao
TCM_029776
I
Traes_2BS_8A1FE01EE
Triticum aestivum
Traes_2BS_8A1FE01EE
I
Traes_2DS_B5227B5F6
Triticum aestivum
Traes_2DS_B5227B5F6
I
TRAES3BF022100010CFD_g
Triticum aestivum
TRAES3BF022100010CFD_g
I
TRAES3BF079200050CFD_g
Triticum aestivum
TRAES3BF079200050CFD_g
I
Traes_4AS_EC04D9E8A
Triticum aestivum
Traes_4AS_EC04D9E8A
I
Traes_4DL_5E79CC79C
Triticum aestivum
Traes_4DL_5E79CC79C
I
TRIUR3_34808
Triticum urartu
TRIUR3_34808
I
TRIUR3_34876
Triticum urartu
TRIUR3_34876
I
VIT_08s0056g01200
Vitis vinifera
VIT_08s0056g01200
I
VIT_10s0003g00560
Vitis vinifera
VIT_10s0003g00560
I
GRMZM2G031882
Zea mays
GRMZM2G031882
I
GRMZM2G133972
Zea mays
GRMZM2G133972
I
GRMZM2G162481
Zea mays
GRMZM2G162481
I
GRMZM2G170958
Zea mays
GRMZM2G170958
I
GRMZM2G314064
Zea mays
GRMZM2G314064
I
GRMZM2G409881
Zea mays
GRMZM2G409881
I