CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ENSMGAG00000005667
(
Meleagris gallopavo
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00010 (HLH)
IPR001092
ENSMGAG00000005667
T035185_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Tcf12
M01740_2.00
Mus musculus
NVCAYCTGB
VCAGRTGBN
PBM
Weirauch et al.(2014)
pTH5071
0.914
1.000
TCF12
M04137_2.00
Homo sapiens
VCACSTGB
VCASGTGB
SELEX
Yin et al.(2017)
TCF12_eDBD_HT-SELEX
0.914
1.000
Tcf12
M08062_2.00
Mus musculus
RRCAGCTGNNN
NNNCAGCTGYY
ChIP-seq
Mathelier et al.(2014)
MA0521.1
0.914
1.000
TCF12
M07805_2.00
Homo sapiens
NVDSCAGSTGB
VCASCTGSHBN
ChIP-seq
Gerstein et al.(2012)
GM12878_TCF12_HudsonAlpha
0.914
1.000
TCF12
M07806_2.00
Homo sapiens
VCASCTGB
VCAGSTGB
ChIP-seq
Gerstein et al.(2012)
H1-hESC_TCF12_HudsonAlpha
0.914
1.000
TCF12
M08731_2.00
Homo sapiens
CMCASCTGSH
DSCAGSTGKG
Misc
Kulakovskiy et al.(2013)
HTF4_HUMAN.H11MO.0.A
0.914
1.000
Tcf12
M08762_2.00
Mus musculus
VMCASCTGSH
DSCAGSTGKB
Misc
Kulakovskiy et al.(2013)
HTF4_MOUSE.H11MO.0.A
0.914
1.000
TCF12
M09458_2.00
Homo sapiens
NNVCAGCTGB
VCAGCTGBNN
Misc
Heinz et al.(2010)
GM12878-Tcf12_GSE32465
0.914
1.000
TCF12
M09858_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HEB_Q6
0.914
1.000
TCF12
M09859_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HTF4_Q2
0.914
1.000
TCF12
M09860_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF12_01
0.914
1.000
TCF12
M09861_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF12_03
0.914
1.000
TCF12
M09862_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF12_05
0.914
1.000
TCF12
M04138_2.00
Homo sapiens
NCAYCTGN
NCAGRTGN
SELEX
Yin et al.(2017)
TCF12_eDBD_Methyl-HT-SELEX
0.914
1.000
Tcf3
M00753_2.00
Mus musculus
VCACCTGBN
NVCAGGTGB
PBM
Weirauch et al.(2013)
pTH3866
0.914
0.885
Tcf3
M01723_2.00
Mus musculus
NNVCACSTGB
VCASGTGBNN
PBM
Weirauch et al.(2014)
pTH4580
0.914
0.885
Tcf3
M00118_2.00
Mus musculus
VCAYCTGB
VCAGRTGB
PBM
Badis et al.(2009)
Tcfe2a_3865
0.914
0.885
Tcf4
M01750_2.00
Mus musculus
VCAGVTGBN
NVCABCTGB
PBM
Weirauch et al.(2014)
pTH5101
0.912
0.962
TCF4
M02807_2.00
Homo sapiens
HRCACCTGBN
NVCAGGTGYD
SELEX
Jolma et al.(2013)
TCF4_1
0.912
0.962
TCF4
M02808_2.00
Homo sapiens
NVCACCTBBN
NVVAGGTGBN
SELEX
Jolma et al.(2013)
TCF4_2
0.912
0.962
TCF4
M02728_2.00
Homo sapiens
RCACCTG
CAGGTGY
SELEX
Jolma et al.(2010)
TCF4_dimer
0.912
0.962
TCF4
M04214_2.00
Homo sapiens
VCACCTGB
VCAGGTGB
SELEX
Yin et al.(2017)
TCF4_eDBD_HT-SELEX
0.912
0.962
Tcf4
M08775_2.00
Mus musculus
HRCACCTGB
VCAGGTGYD
Misc
Kulakovskiy et al.(2013)
ITF2_MOUSE.H11MO.0.B
0.912
0.962
TCF4
M09461_2.00
Homo sapiens
ASWTCAAAGRVN
NBYCTTTGAWST
Misc
Heinz et al.(2010)
Hct116-Tcf4_SRA012054
0.912
0.962
TCF4
M04215_2.00
Homo sapiens
VCACCTGN
NCAGGTGB
SELEX
Yin et al.(2017)
TCF4_eDBD_Methyl-HT-SELEX
0.912
0.962
Tcf3
M09465_2.00
Mus musculus
ABWTCAAAGS
SCTTTGAWVT
Misc
Heinz et al.(2010)
mES-Tcf3_GSE11724
0.886
0.962
Tcf3
M09466_2.00
Mus musculus
VCAGCTGBNN
NNVCAGCTGB
Misc
Heinz et al.(2010)
proBcell-E2A_GSE21978
0.886
0.962
Tcf3
M09886_2.00
Mus musculus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E47_05
0.886
0.962
TCF3
M02775_2.00
Homo sapiens
NVCACCTGBN
NVCAGGTGBN
SELEX
Jolma et al.(2013)
TCF3_1
0.886
0.923
TCF3
M08710_2.00
Homo sapiens
VVCASCTGCHN
NDGCAGSTGBB
Misc
Kulakovskiy et al.(2013)
TFE2_HUMAN.H11MO.0.A
0.886
0.923
TCF3
M09791_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E12_Q6
0.886
0.923
TCF3
M09792_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2A_Q6_01
0.886
0.923
TCF3
M09793_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2A_Q6_02
0.886
0.923
TCF3
M09794_2.00
Homo sapiens
VVVVMCACCTGCNBB
VVNGCAGGTGKBBBB
Transfac
Matys et al.(2006)
V$E47_01
0.886
0.923
TCF3
M09795_2.00
Homo sapiens
NNKWRCACCTGYDNNN
NNNHRCAGGTGYWMNN
Transfac
Matys et al.(2006)
V$E47_02
0.886
0.923
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMGAP00000005613
bHLH
498
551
RRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLLILHQAVAVILSLE
ENSMGAP00000005622
bHLH
313
366
RRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLLILHQAVAVILSLE
Links
Other
bHLH
family TFs
Other
Meleagris gallopavo
TFs
213 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AMTR_s00019p00208460
Amborella trichopoda
AMTR_s00019p00208460
I
ARR10
Arabidopsis lyrata
Al_scaffold_0007_907
I
ARR1
Arabidopsis thaliana
AT3G16857
D
ARR10
Arabidopsis thaliana
AT4G31920
D
Bostr.0556s0001
Boechera stricta
Bostr.0556s0001
I
Bostr.28625s0008
Boechera stricta
Bostr.28625s0008
I
BRADI3G54120
Brachypodium distachyon
BRADI3G54120
I
BRADI1G47400
Brachypodium distachyon
BRADI1G47400
I
Bo1g010830
Brassica oleracea
Bo1g010830
I
Bo3g068550
Brassica oleracea
Bo3g068550
I
Bo5g123620
Brassica oleracea
Bo5g123620
I
Bo7g104190
Brassica oleracea
Bo7g104190
I
Bo7g115520
Brassica oleracea
Bo7g115520
I
Bra023972
Brassica rapa
Bra023972
I
Bra022183
Brassica rapa
Bra022183
I
Bra012743
Brassica rapa
Bra012743
I
Bra001643
Brassica rapa
Bra001643
I
PK02601.1
Cannabis sativa
PK02601.1
I
Cagra.5497s0018
Capsella grandiflora
Cagra.5497s0018
I
Cagra.3807s0064
Capsella grandiflora
Cagra.3807s0064
I
Carubv10013107m.g
Capsella rubella
Carubv10013107m.g
I
Carubv10004554m.g
Capsella rubella
Carubv10004554m.g
I
estExt_Genewise1.C_90203
Chlorella NC64A
estExt_Genewise1.C_90203
I
fgeneshCV_pg.C_scaffold_15000185
Chlorella vulgaris
fgeneshCV_pg.C_scaffold_15000185
I
Ca_09080
Cicer arietinum
Ca_09080
I
Ciclev10007648m.g
Citrus clementina
Ciclev10007648m.g
I
orange1.1g005719m.g
Citrus sinensis
orange1.1g005719m.g
I
gw1.15.242.1
Coccomyxa subellipsoidea C169
gw1.15.242.1
I
Thhalv10024866m.g
Eutrema salsugineum
Thhalv10024866m.g
I
gene10041-v1.0-hybrid
Fragaria vesca
gene10041-v1.0-hybrid
I
Gorai.001G030600
Gossypium raimondii
Gorai.001G030600
I
MLOC_76165
Hordeum vulgare
MLOC_76165
I
Lus10041020.g
Linum usitatissimum
Lus10041020.g
I
Lus10037719.g
Linum usitatissimum
Lus10037719.g
I
Lus10016846.g
Linum usitatissimum
Lus10016846.g
I
Lus10005340.g
Linum usitatissimum
Lus10005340.g
I
cassava37074.valid.m1
Manihot esculenta
cassava37074.valid.m1
I
cassava37075.valid.m1
Manihot esculenta
cassava37075.valid.m1
I
MTR_1g013170
Medicago truncatula
MTR_1g013170
I
GSMUA_Achr9G16610_001
Musa acuminata
GSMUA_Achr9G16610_001
I
GSMUA_Achr11G08310_001
Musa acuminata
GSMUA_Achr11G08310_001
I
29848.m004559
Ricinus communis
29848.m004559
I
SELMODRAFT_447635
Selaginella moellendorffii
SELMODRAFT_447635
I
Traes_6AL_9C9D677D4
Triticum aestivum
Traes_6AL_9C9D677D4
I
Traes_6BL_790C095EE
Triticum aestivum
Traes_6BL_790C095EE
I
Traes_6DL_D1C9CE275
Triticum aestivum
Traes_6DL_D1C9CE275
I