CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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TFAP4
(
Otolemur garnettii
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00010 (HLH)
IPR001092
ENSOGAG00000008955
T036104_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Tfap4
M01717_2.00
Mus musculus
VHCABVYGB
VCRBVTGDB
PBM
Weirauch et al.(2014)
pTH5067
0.914
1.000
TFAP4
M02776_2.00
Homo sapiens
AWCAGCTGWY
RWCAGCTGWT
SELEX
Jolma et al.(2013)
TFAP4_1
0.914
1.000
TFAP4
M02777_2.00
Homo sapiens
AWCAGCTGWT
AWCAGCTGWT
SELEX
Jolma et al.(2013)
TFAP4_2
0.914
1.000
TFAP4
M04066_2.00
Homo sapiens
VHCAKVTGDB
VHCABMTGDB
SELEX
Yin et al.(2017)
TFAP4_eDBD_HT-SELEX_1
0.914
1.000
TFAP4
M04067_2.00
Homo sapiens
VWCAGCTGWB
VWCAGCTGWB
SELEX
Yin et al.(2017)
TFAP4_eDBD_HT-SELEX_2
0.914
1.000
TFAP4
M04070_2.00
Homo sapiens
RHCAYVTGDB
VHCABRTGDY
SELEX
Yin et al.(2017)
TFAP4_FL_HT-SELEX_1
0.914
1.000
TFAP4
M04071_2.00
Homo sapiens
VHCAGCTGDB
VHCAGCTGDB
SELEX
Yin et al.(2017)
TFAP4_FL_HT-SELEX_2
0.914
1.000
TFAP4
M08712_2.00
Homo sapiens
VMNCAGCTGR
YCAGCTGNKB
Misc
Kulakovskiy et al.(2013)
TFAP4_HUMAN.H11MO.0.A
0.914
1.000
TFAP4
M09453_2.00
Homo sapiens
NVHCAGCTGD
HCAGCTGDBN
Misc
Heinz et al.(2010)
AML-Tfap4_GSE45738
0.914
1.000
TFAP4
M09802_2.00
Homo sapiens
MNGNCHVCAGCTGDBBBW
WVVVHCAGCTGBDGNCNK
Transfac
Matys et al.(2006)
V$AP4_01
0.914
1.000
TFAP4
M09803_2.00
Homo sapiens
NNSAGCTGHB
VDCAGCTSNN
Transfac
Matys et al.(2006)
V$AP4_Q5
0.914
1.000
TFAP4
M09804_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AP4_Q6_01
0.914
1.000
TFAP4
M09805_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AP4_Q6_02
0.914
1.000
TFAP4
M09806_2.00
Homo sapiens
NVCAGCTGHB
VDCAGCTGBN
Transfac
Matys et al.(2006)
V$AP4_Q6
0.914
1.000
TFAP4
M04068_2.00
Homo sapiens
DHCABMTGDN
NHCAKVTGDH
SELEX
Yin et al.(2017)
TFAP4_eDBD_Methyl-HT-SELEX_1
0.914
1.000
TFAP4
M04069_2.00
Homo sapiens
AWCAGCTGWT
AWCAGCTGWT
SELEX
Yin et al.(2017)
TFAP4_eDBD_Methyl-HT-SELEX_2
0.914
1.000
TFAP4
M04072_2.00
Homo sapiens
VHCABVTGDB
VHCABVTGDB
SELEX
Yin et al.(2017)
TFAP4_FL_Methyl-HT-SELEX_1
0.914
1.000
TFAP4
M04073_2.00
Homo sapiens
VHCAGCTGDB
VHCAGCTGDB
SELEX
Yin et al.(2017)
TFAP4_FL_Methyl-HT-SELEX_2
0.914
1.000
crp
M03595_2.00
Drosophila melanogaster
AACAGCTGWT
AWCAGCTGTT
SELEX
Nitta et al.(2015)
crp_1
0.843
0.808
crp
M05937_2.00
Drosophila melanogaster
VAHCAGCTGAY
RTCAGCTGDWB
B1H
Zhu et al.(2011)
crp_SANGER_10_FBgn0001994
0.843
0.808
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSOGAP00000008027
bHLH
49
100
RREIANSNERRRMQSINAGFQSLKTLIPHTDGEKLSKAAILQQTAEYIFSLE
Links
Other
bHLH
family TFs
Other
Otolemur garnettii
TFs
103 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
BGIOSGA019942
Oryza indica
BGIOSGA019942
I
Bo3g004060
Brassica oleracea
Bo3g004060
I
Bo9g175780
Brassica oleracea
Bo9g175780
I
Bostr.13129s0288
Boechera stricta
Bostr.13129s0288
I
Cagra.8005s0020
Capsella grandiflora
Cagra.8005s0020
I
Carubv10003744m.g
Capsella rubella
Carubv10003744m.g
I
Eucgr.G02341
Eucalyptus grandis
Eucgr.G02341
I
Eucgr.K01822
Eucalyptus grandis
Eucgr.K01822
I
GLYMA03G29825
Glycine max
GLYMA03G29825
I
GLYMA19G32715
Glycine max
GLYMA19G32715
I
GRMZM2G029979
Zea mays
GRMZM2G029979
I
GSMUA_Achr11G14570_001
Musa acuminata
GSMUA_Achr11G14570_001
I
LPERR05G14450
Leersia perrieri
LPERR05G14450
I
OB05G26080
Oryza brachyantha
OB05G26080
I
OBART05G18270
Oryza barthii
OBART05G18270
I
OGLUM05G19350
Oryza glumaepatula
OGLUM05G19350
I
OLONG_005656
Oryza longistaminata
OLONG_005656
I
OMERI05G15750
Oryza meridionalis
OMERI05G15750
I
ONIVA05G19180
Oryza nivara
ONIVA05G19180
I
ORGLA05G0158500
Oryza glaberrima
ORGLA05G0158500
I
ORUFI05G19430
Oryza rufipogon
ORUFI05G19430
I
OS05G0443900
Oryza sativa
OS05G0443900
I
Pavir.Ha01753
Panicum virgatum
Pavir.Ha01753
N
Pavir.Hb01807
Panicum virgatum
Pavir.Hb01807
I
PDK_20s1736691g001
Phoenix dactylifera
PDK_20s1736691g001
I
PGSC0003DMG400011430
Solanum tuberosum
PGSC0003DMG400011430
I
PGSC0003DMG400023678
Solanum tuberosum
PGSC0003DMG400023678
I
Solyc10g078670.1
Solanum lycopersicum
Solyc10g078670.1
I
Solyc10g080410.1
Solanum lycopersicum
Solyc10g080410.1
I
Solyc11g068370.1
Solanum lycopersicum
Solyc11g068370.1
I
TGA10
Arabidopsis thaliana
AT5G06839
D
TGA10
Arabidopsis lyrata
fgenesh2_kg.6__632__AT5G06839.2
I
Thhalv10014032m.g
Eutrema salsugineum
Thhalv10014032m.g
I